Bacterial and virus strains |
|
Escherichia coli |
CGC |
OP50 |
|
Chemicals, peptides, and recombinant proteins |
|
Octanol |
Sigma-Aldrich |
Cat#112615 |
Glycerol |
Sigma-Aldrich |
Cat#G5516 |
Isoamyl alcohol |
Sigma-Aldrich |
Cat#AX1440 |
Na-acetate |
Sigma-Aldrich |
Cat#S2889 |
Diacetyl |
Sigma-Aldrich |
Cat#B0682 |
Ethyl alcohol |
Pharmco |
Cat#111000200 |
Chloroform |
Sigma-Aldrich |
Cat#C2432 |
Dimethyl sulfoxide |
Sigma-Aldrich |
Cat#D5879 |
Bicuculline |
VWR |
Cat#TBC1890 |
α-MDG |
Sigma-Aldrich |
Cat#102987-308 |
Nifedipine |
Thomas Scientific |
Cat#C931M79 |
KCl |
Sigma-Aldrich |
Cat#9541 |
NaN3
|
Sigma-Aldrich |
Cat#S2002 |
Gluture |
Fisher Scientific |
Cat#NC0632797 |
|
Experimental models: Organisms/strains |
|
N2 |
CGC81
|
N2 |
clh-3(ok768) |
CGC82
|
RB905 |
egl-36(n728n398) |
CGC83
|
KP1008 |
ent-4(ok2161) |
CGC82
|
VC1934 |
glc-3(ok321) |
CGC82
|
RB594 |
glt-5(bz70) |
CGC84
|
ZB1099 |
glt-5(ok1987) |
CGC82
|
RB1615 |
gtl-1(ok375) |
CGC82
|
VC244 |
kcc-1(ok648) |
CGC82
|
VC476 |
kcc-1(ok692) |
CGC82
|
VC542 |
tax-2(p691) |
CGC36
|
PR691 |
kqt-2(ok732) |
CGC82
|
RB883 |
nsls109 [F16F9.3p::DTA(G53E) +unc-122p::GFP]
|
CGC16
|
OS2248 |
odr-3(n2150) |
CGC85
|
CX2205 |
kyIs722 [str-2p::GCaMP5(D380Y) + elt-2::mCherry]
|
CGC |
CX17256 |
kqt-2(tm642) |
NBRP |
N/A |
best-9(tm7876) |
NBRP |
N/A |
Ex[PT02B11.3::abts-4 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC340 |
Ex[PT02B11.3::best-9 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC342 |
Ex[PT02B11.3::clh-3 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC337 |
Ex[PT02B11.3::egl-36 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC336 |
Ex[PT02B11.3::glc-3 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC345 |
Ex[PT02B11.3::kcc-1 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC329 |
Ex[PT02B11.3::twk-21 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC350 |
Ex[PT02B11.3::twk-33 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC338 |
Ex[PT02B11.3:kqt-2 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC358 |
Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC400 |
clh-3(ok768);Ex[PT02B11.3::clh-3b cDNA + Punc-122::GFP]
|
This study |
BLC356 |
kcc-1(ok648);Ex[PT02B11.3::SLC12A4 + Punc-122::GFP]
|
This study |
BLC547 |
best-9(tm7876);Ex[PT02B11.3::best-9 cDNA + Punc-122::GFP]
|
This study |
BLC551 |
egl-36(n728n398);Ex[PT02B11.3::egl-36 cDNA + Punc-122::GFP]
|
This study |
BLC552 |
ent-4(ok2161);Ex[PT02B11.3::ent-4 cDNA + Punc-122::GFP]
|
This study |
BLC555 |
kqt-2(ok732);Ex[PT02B11.3::kqt-2 cDNA + Punc-122::GFP]
|
This study |
BLC491 |
Ex[PT02B11.3::unc-25 RNAi + unc-122p::GFP]
|
This study |
BLC500 |
best-9(tm7876);[osm-10::GFP + lin-15(+)]
|
This study |
BLC554 |
clh-3(ok768); [gcy-5p::GFP + lin-15(+)]
|
This study |
BLC553 |
clh-3(ok768);[osm-10::GFP + lin-15(+)]
|
This study |
BLC548 |
clh-3(ok768);[str-2::GFP + lin-15(+)]
|
This study |
BLC550 |
egl-36(n728n398);[osm-10::GFP + lin-15(+)]
|
This study |
BLC556 |
egl-36(n728n398);[str-2::GFP + lin-15(+)]
|
This study |
BLC560 |
ent-4(ok2161);[osm-10::GFP + lin-15(+)]
|
This study |
BLC557 |
kcc-1(ok648);[osm-10::GFP + lin-15(+)]
|
This study |
BLC558 |
kcc-1(ok648);[str-2::GFP + lin-15(+)]
|
This study |
BLC561 |
kqt-2(ok732);[osm-10::GFP + lin-15(+)]
|
This study |
BLC559 |
best-9(tm7876);Ex[PT02B11.3::GCaMP6s + Punc-122::GFP]
|
This study |
BLC562 |
clh-3(ok768);Ex[PT02B11.3::GCaMP6s + Punc-122::GFP]
|
This study |
BLC563 |
egl-36(n728n398);Ex[PT02B11.3::GCaMP6s + Punc-122::GFP]
|
This study |
BLC564 |
ent-4(ok2161);Ex[PT02B11.3::GCaMP6s + Punc-122::GFP]
|
This study |
BLC566 |
kcc-1(ok648);Ex[PT02B11.3::GCaMP6s + Punc-122::GFP]
|
This study |
BLC565 |
kqt-2(ok732);Ex[PT02B11.3::GCaMP6s + Punc-122::GFP]
|
This study |
BLC567 |
best-9(tm7876);Ex[PT02B11.3::GCaMP6s + Punc-122::GFP]
|
This study |
BLC568 |
egl-36(n728n398);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC570 |
ent-4(ok2161);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC572 |
kcc-1(ok648);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC573 |
kqt-2(ok732);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC 492 |
best-9(tm7876);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC572 |
egl-36(n728n398);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC577 |
ent-4(ok2161);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC578 |
kcc-1(ok648);Ex[pSra-6::GCaMP-6s + unc-122::GFP]
|
This study |
BLC579 |
clh-3(ok768);[str-2p::GCaMP5(D380Y) + elt-2::mCherry]
|
This study |
BLC574 |
egl-36(n728n398);[str-2p::GCaMP5(D380Y) + elt-2::mCherry]
|
This study |
BLC524 |
kcc-1(ok648);[str-2p::GCaMP5(D380Y) + elt-2::mCherry]
|
This study |
BLC575 |
clh-3(ok768);Ex[PT02B11.3::clh-3b cDNA + Punc-122::GFP];[str-2p::GCaMP5(D380Y) + elt-2::mCherry]
|
This study |
BLC583 |
egl-36(n728n398);Ex[PT02B11.3::egl-36 cDNA + Punc-122::GFP];[str-2p::GCaMP5(D380Y) + elt-2::mCherry]
|
This study |
BLC584 |
kcc-1(ok648);Ex[PT02B11.3::SLC12A4 + Punc-122::GFP];[str-2p::GCaMP5(D380Y) + elt-2::mCherry] |
This study |
BLC585 |
best-9(tm7876);Ex[pSra-6::GCaMP-6s + unc-122::GFP + PT02B11.3::best-9 cDNA + Pmec-4::mcherry]
|
This study |
BLC587 |
egl-36(n728n398);Ex[pSra-6::GCaMP-6s + unc-122::GFP + PT02B11.3::egl-36 cDNA + Pmec-4::mcherry]
|
This study |
BLC588 |
ent-4(ok2161);Ex[pSra-6::GCaMP-6s + unc-122::GFP + PT02B11.3::ent-4 cDNA Pmec-4::mcherry]
|
This study |
BLC580 |
kcc-1(ok648);Ex[pSra-6::GCaMP-6s + unc-122::GFP + PT02B11.3::SLC12A4 cDNA + Pmec-4::mcherry]
|
This study |
BLC581 |
kqt-2(ok732);Ex[pSra-6::GCaMP-6s + unc-122::GFP + PT02B11.3::kqt-2 cDNA + Pmec-4::mcherry]
|
This study |
BLC582 |
kcc-1(ok648);Ex[pSra-6::GCaMP-6s + unc-122::GFP + PT02B11.3::kcc-1a cDNA + Pmec-4::mcherry]
|
This study |
BLC648 |
kcc-1(ok648);Ex[pSra-6::GCaMP-6s + unc-122::GFP + Pstr-2::kcc-1a cDNA + Pmec-4::mcherry]
|
This study |
BLC649 |
best-9(tm7876);Ex[pT02B11.3::SuperClomeleon]
|
This study |
BLC616 |
kcc-1(ok648);Ex[pT02B11.3::SuperClomeleon]
|
This study |
BLC628 |
clh-3(ok768);Ex[pT02B11.3::SuperClomeleon]
|
This study |
BLC621 |
Ex[pT02B11.3::SuperClomeleon]
|
This study |
BLC498 |
best-9(tm7876);Ex[PT02B11.3::kcc-1 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC567 |
kqt-2(ok732);Ex[PT02B11.3::egl-36 RNAi + unc-122p::GFP + Pvap-1::RFP]
|
This study |
BLC571 |
clh-3(ok768);kcc-1(ok648)
|
This study |
BLC605 |
Ex[PT02B11.3:egl-19 RNAi + unc-122p::GFP]
|
This study |
BLC630 |
|
Oligonucleotides |
|
pPD95_75 |
A gift from Andrew Fire |
RRID:Addgene_1494 |
pPD95_75 (pSra-6::::GCaMP-6s)
|
This study |
N/A |
pPD95_75 (pT02B11.3::SLC12A4)
|
This study |
N/A |
pPD95_75 (pT02B11.3::clh-3b cDNA)
|
This study |
N/A |
pPD95_75 (pT02B11.3::kcc-1a cDNA)
|
This study |
N/A |
pPD95_75 (pstr-2::kcc-1a cDNA)
|
This study |
N/A |
pPD95_75 (pT02B11.3::sense kcc-1 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::antisense kcc-1 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::sense abts-4 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::antisense abts-4 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::sense best-9 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::antisense best-9 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::sense clh-3 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::antisense clh-3 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::sense egl-36 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::antisense egl-36 RNAi)
|
This study |
N/A |
pPD95_75 (pUnc-122::GFP)
|
(Grant et al., 2015)20
|
N/A |
pPD95_75 (pVap-1::RFP)
|
(Johnson et al., 2020)22
|
N/A |
pPD95_75 (pT02B11.3::sense glc-3 RNAi)
|
This study |
N/A |
pPD95_75 (pT02B11.3::antisense glc-3 RNAi)
|
This study |
N/A |
pPD95.75 (pT02B11.3::sense twk-33 RNAi)
|
This study |
N/A |
pPD95.75 (pT02B11.3::antisense twk-33 RNAi) |
This study |
N/A |
pPD95_75 (pT02B11.3::SuperClomeleon) |
This study |
N/A |
pPD95_75 (pT02B11.3::sense twk-21 RNAi) |
This study |
N/A |
pPD95_75 (pT02B11.3::antisense twk-21 RNAi) |
This study |
N/A |
pPD95_75 (pT02B11.3::sense kqt-2 RNAi) |
This study |
N/A |
pPD95_75 (pT02B11.3::antisense kqt-2 RNAi) |
This study |
N/A |
pPD95_75 (pT02B11.3::best-9 cDNA) |
This study |
N/A |
pPD95_75 (pT02B11.3::ent-4 cDNA) |
This study |
N/A |
pPD95_75 (pT02B11.3::kqt-2 cDNA) |
This study |
N/A |
pMec-4::mcherry |
This study |
N/A |
pT02B11.3::sense egl-19 RNAi |
This study |
N/A |
pT02B11.3::antisense egl-19 RNAi |
This study |
N/A |
|
Software and algorithms |
|
Fiji (ImageJ) |
NIH |
http://fiji.sc |
RRID:SCR_002285
|
Micro-manager |
Vale Lab, UCSF |
https://micro-manager.org/ |
RRID:SCR_000415
|
RStudio |
RStudio |
http://www.rstudio.com/ |
RRID:SCR_000432
|
GraphPad Prism |
GraphPad software |
http://www.graphpad.com/ |
RRID:SCR_002798
|