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PLOS ONE logoLink to PLOS ONE
. 2022 Dec 29;17(12):e0278115. doi: 10.1371/journal.pone.0278115

APOL1 genotype associated risk for preeclampsia in African populations: Rationale and protocol design for studies in women of African ancestry in resource limited settings

Charlotte Osafo 1,2,*, Nicholas Ekow Thomford 3,4, Jerry Coleman 5,, Abraham Carboo 6,, Chris Guure 7,, Perditer Okyere 7,, Dwomoa Adu 1,#, Richard Adanu 8,#, Rulan S Parekh 9,#, David Burke 10,#
Editor: Vicente Sperb Antonello11
PMCID: PMC9799323  PMID: 36580463

Abstract

Background

Women of African ancestry are highly predisposed to preeclampsia which continues to be a major cause of maternal death in Africa. Common variants in the APOL1 gene are potent risk factor for a spectrum of kidney disease. Recent studies have shown that APOL1 risk variants contribute to the risk of preeclampsia. The aim of the study is to understand the contribution of APOL1 risk variants to the development of preeclampsia in pregnant women in Ghana.

Methods

The study is a case-control design which started recruitment in 2019 at the Korle Bu Teaching Hospital in Ghana. The study will recruit pregnant women with a target recruitment of 700 cases of preeclampsia and 700 normotensives. Clinical and demographic data of mother- baby dyad, with biospecimens including cord blood and placenta will be collected to assess clinical, biochemical and genetic markers of preeclampsia. The study protocol was approved by Korle Bu Teaching Hospital Institutional Review Board (Reference number: KBTH-IRB/000108/2018) on October 11, 2018.

Preliminary results

As of December 2021, a total of 773 mother-baby pairs had been recruited and majority of them had complete entry of data for analysis. The participants are made up of 384 preeclampsia cases and 389 normotensive mother-baby dyad. The mean age of participants is 30.69 ± 0.32 years for cases and 29.95 ± 0.32 for controls. Majority (85%) of the participants are between 20-30years. At booking, majority of cases had normal blood pressure compared to the time of diagnosis where 85% had a systolic BP greater than 140mmHg and a corresponding 82% had diastolic pressure greater than 90mmHg.

Conclusion

Our study will ultimately provide clinical, biochemical and genotypic data for risk stratification of preeclampsia and careful monitoring during pregnancy to improve clinical management and outcomes.

Introduction

Up to 8% of pregnancies are complicated by hypertensive disorders [1] resulting in maternal and neonatal morbidity and mortality particularly in developing countries [1, 2]. Pregnancy-related hypertensive disorder is referred to as preeclampsia which is characterized by new onset of hypertension (blood pressure ≥140/90mmHg) and proteinuria (greater than 1+ or 300mg per 24hours) after 20 weeks gestation [3, 4]. This definition has been expanded to include renal, liver, hematological and neurological dysfunction and fetal growth restriction [5]. The prevalence of preeclampsia in sub-Saharan Africa is high with an incidence rate of over 15% [6]. In sub-Saharan regions such as West Africa and especially Ghana, there is a reported incidence of approximately 8% [7]. A systematic analysis of prevalence of preeclampsia across sub-Saharan Africa has seen an increase over the past decade [6]. Women of African ancestry are highly predisposed to preeclampsia with a greater propensity to develop into a more complicated form known as HELLP (H = Haemolysis, EL = Elevated Liver enzymes, LP = Low Platelets) syndrome [811]. It is estimated that the prevalence of preeclampsia is higher in indigenous African women and those of African ancestry diaspora [8] than any other racial groups. This susceptibility to preeclampsia appears independent of socioeconomic status and may potentially be due to genetic factors [12, 13].

Genetic susceptibility to preeclampsia has for several decades been suspected but there is very limited research in this area especially among women of African ancestry. Predominant functional candidate genes studies in pre-eclampsia have targeted mechanisms such as thrombophilia (F5, MTHFR, F2, SERPINE1), Endothelial function (eNOS3, VEGFR1), vasoactive proteins (AGT, ACE), oxidative stress and lipid metabolism (APOE, EPHX, GST) and immunogenetics (TNF, IL10). Such studies have mostly been conducted in other populations and often target only maternal genotype.

Despite the long-term sequelae of preeclampsia, which includes increased risk of hypertension, cardiovascular disease, chronic kidney disease (CKD) and end stage renal disease (ESRD) among women of African descent, little is known about genetic risk factors such as apolipoprotein L1 (APOL1) risk. Common variants in the apolipoprotein L-1 gene (APOL1) only found predominantly in West Africans, make up the 2 risk haplotypes termed G1 and G2, which are potent risk factors for a spectrum of kidney diseases [14] but very rare in European ancestry individuals. There is a strong relationship between kidney function and hypertension [15, 16] and considering the importance of the APOL1 gene to people of African descent, an in-depth understanding of the role of this gene in preeclampsia in indigenous African women will be key to understanding preeclampsia genetics and advance biomarker innovations.

APOL1 high risk variants [17] are present at high frequencies in populations of West African descent and account for much of increased risk of non-diabetic chronic kidney disease [18, 19]. Among populations from Nigeria and Ghana, the APOL1 high-risk genotype frequency approaches 25% and 13% in African Americans who share west African ancestry. The frequencies are enriched among those with chronic kidney disease [18, 19]. It is known that preeclampsia results in part from microangiopathy in the glomerulus of the kidney suggesting a potentially important role of APOL1 in preeclampsia [20, 21]. Evidence from previous studies have found associations of APOL1 risk variants with microangiopathy in HIV positive patients [22, 23]. In a transgenic mouse model, a pregnancy-associated phenotype that encompassed eclampsia, preeclampsia, fetal wasting occurred in some Tg-G0 mice and Tg-G2 mice. Placentas of Tg mice expressed APOL1, similar to human placenta, suggesting a role for APOL1 in preeclampsia [24]. Small sample sized studies have looked at the genotype associated risk for preeclampsia in women of African ancestry [25, 26] mostly looking at African Americans. APOL1 conferred a 2-fold increased risk of preeclampsia for fetuses carrying homozygotes or compound heterozygotes (G1/G1, G2/G2, or G1/G2), termed the high-risk genotypes. In addition, high-risk APOL1 genotypes may present a higher proportion in infants born from birth complications by preeclampsia and may have poor perinatal outcomes [27]. These studies thus suggest there is an interaction between the fetus and/or placenta resulting in causal effects for preeclampsia resulting in a potential long-term effect on CKD development in women [26]. It is also conceivable that APOL1 expression in the placenta may play a causal role in preeclampsia, which may be modulated by either maternal or infant APOL1 genotype.

To date there has been no studies in indigenous women of African ancestry specifically focusing on APOL1 associated risk factors with a highly powered sample size. Most studies have been in African Americans without sufficiently large sample size, which has been mostly the challenge. Developing a study that is aimed specifically at genotype associated risk preeclampsia allows for accurate biomedical and clinical phenotyping and identification of genotype-phenotype associated risk factors with clinical and birth outcomes. There still remains a gap in differential impact of APOL1 status of mother and child with either maternal or perinatal outcomes. This study would give some idea about the penetrance of APOL1 in African populations experiencing different demographics and environmental stressors than African descendants living in the USA. The overarching objective for the APOL1 characterization in preeclampsia is to undertake a comprehensive genotype-phenotype of a cohort with translational potential. This study involves a team of clinicians with various specialties, scientists and has capacity building component as part of the study.

Aims and objectives

The overall aim is to understand the influence of APOL1 on preeclampsia and its sequelae on both perinatal and maternal outcomes using a case- control design. The study will: (1) examine the association of APOL1 risk variants in pregnant women with preeclampsia compared to normotensive pregnant women, (2) determine the risk of perinatal outcomes among infants from mothers with pre-eclampsia compared to infants from normotensive mothers by APOL1 risk variant status and (3) Undertake a longitudinal follow up of both the preeclamptic and normotensive mothers recruited into the study to determine the incidence of non-communicable diseases including Chronic Kidney Disease (CKD), Hypertension, Stroke, Mental Health and Cardiovascular diseases among the women with preeclampsia versus normotensive women stratified by APOL1 status.

Impact and innovation

This study is key to addressing an important disease related to pregnancy with a potential for biomarker innovation. One unique aspect of this study is the population cohort of black African women. Outcome from the study will provide data on risk stratification for preeclampsia and information on careful monitoring during pregnancy with clinical correlation (Box 1).

Box 1. Impact and innovation of study

  • Determination of risk of both maternal and infant APOL1 risk variants and association with preeclampsia.

  • Have novel insights into genetic factors that increase risk for worse perinatal outcomes.

  • Create a research platform with a well characterized cohort and specimen repository for clinical and translational studies in preeclampsia among women of African ancestry for African investigators.

  • Harness a simple genotyping platform to develop a preconception screening platform for high-risk women who present at a health facility.

  • Developing genetic tools to predict risk of preeclampsia in women of African ancestry with direct impact on the clinical care during pregnancy and perinatal outcomes, as well as reducing maternal fatality.

This study is timely and addresses an important public health issue as maternal health improves the health and welfare of entire communities.

Methods

Study design/population

The work describes a case-control study design with a target number of 700 cases of preeclampsia and 700 cases of normotensive pregnant women, prospectively enrolled. Recruitment started in May 2019 involving women who are diagnosed with preeclampsia for the very first time as cases. The target population are African women; however, the only recruiting facility is KBTH in Ghana. The work will capture a significant number of Ghanaian women with longitudinal follow-up over 3 years. All pregnant women will be eligible for recruitment. Eligible women will be screened and enrolled into the study after provision of informed consent.

Ethical consideration

The study protocol was approved by the Korle Bu Teaching Hospital Scientific and Technical committee/ Institutional Review Board (reference number: KBTH-STC/IRB/000108/2018). Written informed consent was obtained from participants after explaining to them about the study with the option of discontinuing without any consequences. The inclusion and exclusion criteria are shown in Table 1.

Table 1. Inclusion and exclusion criteria.

Inclusion criteria Exclusion criteria
Cases
Preeclampsia will be defined as women with new onset of hypertension (blood pressure ≥140/90mmHg) and proteinuria (greater than 1+ or 300mg per 24hours) after 20 weeks gestation Prior history of preeclampsia
Patients with preeclampsia, who develop eclampsia and HELLP syndrome Patients with prior chronic hypertension defined as hypertension that precedes pregnancy or occurs in the first half of pregnancy
Controls Patients with existing co-morbid conditions such as diabetes, antepartum hemorrhage, other endocrine conditions or any secondary hypertension
Participants who did not have a diagnosis of preeclampsia at any time during the pregnancy Patients who have had blood transfusion in the last three months
Patients who sign informed consent Patients who do not sign informed consent

Overview of data collection

Participants involved in the study went through a comprehensive clinical assessment, an overview of which is shown in Fig 1. This assessment also included each baby that was born.

Fig 1. Overview of the clinical assessment.

Fig 1

Recruitment strategy

The recruitment team which is made up of nurses, doctors and medical laboratory scientists underwent training and familiarization with the goals of the project at the maternity block of Korle Bu Teaching Hospital (KBTH), which is a university affiliated teaching hospital. The team was then trained on how to obtain informed consent, and how to use the Redcap app to collect data. In addition, the team was taken through a practical session on how to take cord blood and placenta sample, how to snap freeze placenta sample and cord blood and how to package maternal samples for collection and processing by the laboratory technician.

To ensure efficient patient recruitment and improve communication among team members, a WhatsApp group was created for the team members to alert members of potential patients for recruitment and to report issues that needed urgent attention.

Our data collection instrument was transferred onto the redcap app which was initially implemented on three android tablets. After an initial pilot, we noticed that it was easier on phone so the app was installed on the phone. Each member of the recruitment team was given a unique identifier available for use from an earlier project that had been completed.

Patients were assessed as potential candidates for recruitment based on their medical history. The clinical team talked to the patient in the language the patients understood and then sought consent. Once consent was given, patients were recruited into the study, given a unique code and a comprehensive questionnaire administered. Clinical information was taken from patients’ folders and then study visits scheduled based on patient’s appointment at the facility.

Since study participants attended antenatal clinics, study related data collection was scheduled to coincide with the hospital visit so as not to inconvenience them. The schedules of all antenatal visits were maintained and the estimated time of delivery kept. On the day of delivery, samples were collected and newborn baby assessed.

Data collection and quality control

The target participants for this study include a minimum of 1400 participants of age-matched cases of patients with preeclampsia and controls of normotensive patients. The sample size has enough statistical power to allow a robust interpretation of the variables that will be collected as part of the cohort and clinical outcomes which will serve as our phenotypes. The data collected is collated and entered into Redcap by a team of clinicians, research scientists, laboratory technicians and data entry clerks. To maintain data validity and quality control, regular meetings were held with the study coordinator and recruitment team to review enrollment, data entry, missing information and specimen collection. The data are stored in a database that provides detailed recording of clinical, demographic and phenotyping characteristics of the cohort. Access to Redcap is limited to key personnel of the research team that ensures data quality and reconciliation.

Sample collection and laboratory assays

During the course of the study, we established an accompanying biorepository which will be available for future study. Samples collected from pregnant mothers included whole blood and urine on the day of recruitment. All samples collected are barcoded for both mother and child and stored at -80 degrees Celsius. At delivery, placenta and cord blood were collected. Placental samples were collected from a standardized location approximately 2cm beside the umbilical cord insertion, from the middle layer of placenta midway between maternal and fetal surfaces. The samples were cut into 1cm cubes and snap frozen in liquid nitrogen. Cord blood was snap frozen within 10mins of collection and then stored at -80 degree Celsius. Blood samples were processed by MDS laboratory. Laboratory tests were conducted according to local laboratory protocols. All biochemical tests were undertaken with automated analysers at the research lab of MDS Lancet laboratories, Ghana (https://www.cerbalancetafrica.com.gh/). All patients recruited into the study underwent an initial laboratory testing to obtain a baseline hematological and kidney function tests. For the mothers, hemoglobin, white blood cell and platelet counts, liver function tests, serum creatinine and urine albumin creatinine ratio were conducted. Several biomarkers have been used to diagnose preeclampsia and serve as valuable indicators. These include (i) renal impairment markers (serum creatinine, urine albumin creatinine ratio) (ii) liver dysfunction markers (AST, ALT) (iii) hypertension markers, and (iv) reduced platelets. These markers were used for phenotyping of preeclampsia and interpreted through the genetic model that will be generated. Random duplicate samples will be taken for validation of laboratory measurements periodically. We plan to measure biomarkers for preeclampsia (Table 2), conduct placental histology and also follow up both babies and their mothers to determine the incidence of chronic kidney disease and other non-communicable diseases. Preeclampsia is not an easy condition to diagnose and thus physicians typically rely on several symptoms to guide diagnosis (Fig 2).

Table 2. Biomarkers and time points for collection.
Preeclampsia Renal function Inflammation
Biomarker Time Point for Collection Biomarker Time Point for Collection Biomarker Time Point for Collection
VEGF At recruitment SCr At recruitment and annually CRP At recruitment
PIGF UACR IL-6
s-FLT-1 - IL-8
s-Eng - TNF-alpha

VEGF: Vascular Endothelial Growth Factor; PIGF: Placenta Growth Factor; s-FLT-1: Soluble fms-like tyrosine kinase; s-Eng: Soluble Endoglin; sCr: Serum Creatinine; UACR: Urine Albumin Creatinine Ratio; CRP: C-reactive protein; IL-6: Interleukin 6; IL-8: Interleukin 8; TNF-alpha: Tumour Necrosis Factor alpha.

Fig 2. Summarized pathogenesis of preeclampsia.

Fig 2

Genetic analysis

DNA has been isolated and currently samples are being prepared for APOL1 genotyping. In this study multiple SNP analysis will be performed to further explore the genetic predisposition to preeclampsia in West African women. Selected APOL1 SNPs to be considered are G1: rs73885319, rs60910145, and G2:rs71785313, rs12106505. Several studies on the genetic predisposition to preeclampsia have attempted to use candidate gene approach. These candidate gene approach have often focused on maternal genes as causative genes. Preeclampsia appears to be associated with APOL1 variants G1 and G2 [28, 29]. However APOL1 variants in preeclampsia are complex, as some studies have linked disease with maternal APOL1 [30], while others with fetal APOL1 variants [25, 27]. Genotyping will be undertaken in Ghana using predesigned TaqMan assays in the Pharmacogenomics and Genomic Medicine laboratory (www.pgmg-lab.com), School of Medical Sciences, University of Cape Coast.

Current status of the study

Preliminary data and current status of study

Recruitment is currently on going, with a target goal of 1400 participants. however as of 2021, a total of 773 mother baby dyad have been recruited making more than half of each recruitment group. These were made up of 384 pre-eclampsia individuals and 389 normotensive mother-baby dyad. Preliminary data and baseline characteristics of the participants are shown in Table 3.

Table 3. Characteristic of recruited patients with and without preeclampsia.

Variable Enrolled pairs
Cases n (%) Control n (%)
N 773 384 389
Maternal age (years)
mean ± SE 30.69 ± 0.32 29.95 ± 0.32
10–19 12 (3.13) 29 (7.46)
20–29 167 (43.49) 142 (36.50)
30–39 176 (45.83) 194 (49.87)
40–49 28 (7.29) 23 (5.91)
Missing 1 (0.26) 1 (0.26)
Marital status
Married 278 (72.40) 274 (70.44)
Single 92 (23.96) 110 (28.28)
Co-habiting 7 (1.82) 1 (0.26)
Missing 7 (1.82) 3 (0.77)
Maternal BMI (kg/m 2 )
@booking <18.5 22 (5.73) 14 (3.60)
18.5–24.9 73 (19.01) 121 (31.11)
25.0–29.9 108 (28.13) 108 (27.76)
30–39.9 92 (23.96) 79 (20.31)
≥40 16 (4.17) 10 (2.57)
Missing 73 (19.01) 57 (14.65)
@20 weeks
<18.5 0 (0) 0 (0)
18.5–24.9 0 (0) 1 (0.26)
25.0–29.9 1 (0.26) 0 (0)
30–39.9 0 (0) 0 (0)
≥40 175 (45.57) 156 (40.10)
Missing 208 (54.17) 232 (59.64)
@ after 30weeks
<18.5 112 (29.17) 97 (24.94)
18.5–24.9 13 (3.39) 28 (7.20)
25.0–29.9 46 (11.98) 83 (21.34)
30–39.9 114 (29.69) 106 (27.25)
≥40
Missing 73 (19.01) 57 (14.65)
Ethnicity
Akan 180 (46.88) 173 (44.47)
Ewe 42 (10.94) 43 (11.05)
Ga 70 (18.23) 95 (24.42)
Hausa 31 (8.07) 24 (6.17)
Ga-Adangbe 9 (2.34) 3 (0.77)
Others 31 (8.07) 30 (7.71)
Missing 21 (5.47) 21 (5.40)
Education
No formal education 25 (6.51) 18 (4.63)
Primary 35 (9.11) 55 (14.14)
Junior High School 133 (34.64) 103 (26.48)
Senior High School 109 (28.39) 118 (30.33)
Vocational School 0 (0.00) 3 (0.77)
Tertiary 60 (15.63) 77 (19.79)
Missing 19 (4.95) 1 (0.26)
Alcohol usage
Gave up before pregnancy 33 (8.59) 24 (6.17)
Gave during Pregnancy 13 (3.39) 8 (2.06)
Never 334 (86.98) 355 (91.26)
Missing 4 (1.04) 2 (0.51)
Systolic BP (mmHg)
@booking 60–139 315 (82.03) 362 (93.06)
>140 41 (10.68) 2 (0.51)
missing 28 (7.2) 25 (6.43)
@diagnosis 60–139 42 (10.94) 358 (92.03)
>140 332 (85.35) 22 (5.66)
missing 10 (2.60) 9 (2.31)
Diastolic BP (mmHg)
@booking 10–89 296 (77.08) 352 (90.49)
>90 60 (15.63) 10 (2.57)
Missing 28 (7.29) 27 (6.94)
@diagnosis.
10–89 54 (14.06) 347 (89.20)
>90 318 (82.81) 33(8.48)
Missing 12 (3.13) 9 (2.31)
Gravidity
1 91 (23.70) 87 (22.37)
2 77 (20.05) 1 (0.26)
3 61 (15.89) 1 (0.26)
4 57 (14.84) 1 (0.26)
5 45 (11.72) 102 (26.22)
6 19 (4.95) 74 (19.02)
7 19 (4.95) 61 (15.68)
8 4 (1.04) 34 (8.74)
9 4 (1.04) 15 (8.74)
10 4 (1.04) 5 (1.29)
Missing 3 (0.78) 2 (0.51)

The mean age of the preeclampsia patients is 30.69 ± 0.32 years, while that of normotensive controls is 29.95 ± 0.32 years. The majority (~85%) of the participants are between 20–30 years, with 70% of them being married. At recruitment, 82% of the preeclampsia participants were having normal systolic blood with a corresponding 77% diastolic blood pressure (Table 2). After 20 weeks 85% had systolic blood pressure of more than 140mmHg for preeclampsia participants with 82% having a diastolic blood pressure of greater than 90mmHg. Normotensive controls had more than 90% of the participants having a systolic blood pressure of less than 140mmHg and a diastolic blood pressure of less than 90mmHg.

Clinical and biochemical indicators of preeclampsia is shown in Table 4. The preliminary results indicate variations in the various biochemical parameter of susceptibility to preeclampsia and phenotyping.

Table 4. Clinical parameters and hematological indicators of preeclampsia.

Variable Enrolled pairs
Cases n (%) Control n (%)
N 773 384 389
Hb (g/dL) 0–11 212 (54.95) 236 (60.67)
12–16 123 (32.03) 103 (26.48)
Missing 49 (12.76) 50 (12.85)
PLT (x 10 9 /L 5–150 46 (11.98) 22 (5.66)
151–450 135 (34.70) 159 (40.87)
451–600 1 (0.26) 0 (0.00)
Missing 202 (52.60) 208 (53.47)
eGFR (ml/min/1.73m 2 ) 0–15 1 (0.26) 0 (0.00)
16–29 5 (1.30) 1 (0.26)
30–59 18 (4.69) 2 (0.51)
60–89 199 (51.82) 179 (46.02)
Missing 161 (41.93) 207 (53.21)
HCT (L/L) 0–0.47 205 (53.39) 194 (49.87)
>0.47 1 (0.26) 0 (0.00)
Missing 178 (46.35) 195 (50.13)
UACR (mg/mmol) <3 10 (2.60) 51 (13.11)
3–30 34 (8.85) 101 (25.96)
>30 160 (41.67) 40 (10.28)
Missing 180 (46.88) 197 (50.64)

Table 5 shows family history of diseases that could predispose mothers to preeclampsia. Majority of participants had no family history of diabetes mellitus, sickle cell disease, asthma, preeclampsia, birth defects or multiple pregnancies.

Table 5. Family History of risk factors for participants with and without preeclampsia.

Variable Enrolled pairs
Cases n (%) Control n (%)
N 773 384 389
Diabetes mellitus No 362 (94.27) 365 (93.83)
Yes 12 (3.13) 17 (4.37)
Unknown 4 (1.04) 3 (0.77)
Missing 6 (1.56) 4 (1.03)
Sickle Cell Disease No 359 (92.29) 363 (93.32)
Yes 12 (3.13) 16 (4.11)
Unknown 8 (2.08) 6 (1.54)
Missing 5 (1.30) 4 (1.03)
Asthma No 363 (94.53) 368 (94.60)
Yes 9 (2.34) 6 (1.54)
Unknown 5 (1.30) 8 (2.06)
Missing 7 (1.82) 7 (1.80)
preeclampsia No 361 (94.01) 361 (92.80)
Yes 2 (0.52) 1 (0.25)
Unknown 17 (4.43) 18 (4.46)
Missing 4 (1.04) 9 (2.31)
Birth defects No 374 (97.40) 379 (97.43)
Yes 3 (0.78) 4 (1.03)
Unknown 3 (0.78) 3 (0.77)
Missing 4 (1.04) 3 (0.77)
Multiple pregnancies No 272 (70.83) 271 (69.67)
Yes 104 (27.08) 111 (28.53)
Unknown 4 (1.04) 3 (0.77)
Missing 4 (1.04) 4 (1.03)

Discussion and study challenges

Preeclampsia is a significant complication in pregnant women with consequences of morbidity and mortality for both the mother and the child. Despite several decades of research and an etiology leading to disease, clinicians are unable to predict and manage preeclampsia prior to symptom onset. Traditionally, clinicians have relied on maternal risk factors such as age, family history and comorbidities in trying to identify “at-risk” women. These traditional risk factors are generalized and non-modifiable in several conditions and thus affects accuracy in classifying women. Several angiogenic biomarkers are being developed in several populations to improve prediction [3032].

Though angiogenic markers may be helpful in diagnosis and eventual management of preeclampsia, identifying genetic biomarkers in preeclampsia will increase the prediction of genetic predisposition and associated triggers and environments. Genetic predisposition to preeclampsia plays a significant role in the condition and identifying “at risk” women may prevent preeclampsia-related complications. The gene APOL1 has been implicated in preeclampsia, consequently, the role of APOL1 in populations of African origin may achieve opportunities for improved diagnosis and management. Given the utility of genetic screening in medical genetics practice, the uniqueness and potential for APOL1 screening to identify “at risk” women will be very useful. The current study has a recruitment target of 1400 mother- baby dyad in a longitudinal study design that includes comprehensive clinical assessments at sequential pre-birth timepoints and post-delivery clinical and morphologic assessment. There is a comprehensive plan to follow up on both mother and baby to observe for any complications arising from preeclampsia during birth.

Our preliminary data so far have shown distinct characteristics among the preeclampsia patients and controls. During antenatal visits, an increase in blood pressure of ≥140/90mmHg after 20 weeks were observed in our preeclampsia patients. Biochemical and clinical parameters of preeclampsia were also observed in several of diagnosed preeclampsia patients. The majority of patients had no family history of disease, preexisting hypertension, sickle cell disease, or prior preeclampsia. Our methodology and recruitment strategies have been designed with an aim to addressing and standardizing evidential gaps especially in phenotyping. Data collection has been comprehensive and 1033 data collection tools capturing clinical and treatment history, biochemical markers and clinical features of both mother and babies have been obtained.

There is a limitation to our study. Our sample was limited to women without a prior history of preeclampsia. This removes from our study population women who might have recurrent preeclampsia due to their (or their fetus’) APOL1 status. This may result in an underestimate of the relationship between APOL1 and preeclampsia.

Challenges

Protocol, recruitment, and patient attrition

There have been several challenges during the implementation of the project. A primary challenge is the attrition rate of recruitment nurses from the project in pursuit of other ventures. At the commencement of the project, we had several meetings and training activities with the nursing staff to map out strategies and the recruitment plan. Recruitment began appropriately, with approximately 30 patients (cases and controls) per month. However, as the trained nurses left, recruitment dropped while the replacement nurses were recruited and trained to tasks. Multiple cases and fetal samples were missed by newly-trained staff. Delivery times at late night and early mornings resulted in missing samples. Frequently, patients are in labor for several hours. During late evenings, trained team recruitment nurses complete their shifts and hand over to a colleague. Even with clear instructions, the take-over nurses fail to obtain samples. We solved this issue by employing a recruitment nurse during the night shift to assist in night recruitment and to reduce sample collection losses.

Table 6 summarizes the major challenges encountered in the project and interventions implemented and Fig 3 shows the change in cord sample numbers per year after intervention. The total percentage of cord blood and placental samples missed in 2021 was 8.41% compared with 17.92% in 2020.

Table 6. Timelines of major challenges encountered and interventions implemented.
Challenge Period of facing challenge/implementation (months) Effect of Challenge Intervention Effect of new intervention
Loss of trained recruitment nurses 18 months Affected recruitment numbers and missed samples Increased the number of recruitment nurses per ward or floor and robust backup plans Reduction in the loss of samples (Fig 3)
Parallel research projects competing for the same patients 24 months Reduction in recruitment numbers and obtaining enough blood volumes Division of recruitment floors and patient management Improvement in recruitment numbers and adequate blood volumes for further downstream analysis
Patients had difficult veins which meant we couldn’t get enough blood volumes 6 months Inadequate blood volumes during recruitment Use of vacutainer apparatus to increase blood volume Volumes of blood increased
Hemolysis of blood samples 6 months Negatively affected biochemical analysis Immediate separation of samples after collection number of hemolysed samples reduced
Recruitment during early stages of pregnancy 12 months Loss to follow up and emergency deliveries Recruitment was planned to reduce the time between recruitment and delivery Reduction in loss of participants
Fig 3. Number of cord blood samples missed over the period of recruitment.

Fig 3

Data entry and integrity

Our data is collected using the web-based Research Electronic Data Capture (REDCap) management system. Data quality was captured using a standard data entry interface. Records are updated regularly and the integrity checked weekly. Data entry has been allocated to specific data collectors and scientists to ensure accuracy. However, some missing data can be observed in the preliminary data shown in Tables 24. Missing data is primarily the result of: (1) missing research IDs for patients, (2) biochemical data lost at the testing laboratory, and (3) loss of Internet connectivity from field data collectors.

Genotyping and infrastructure development

Preeclampsia and its associated health outcome phenotype measures must be supported by the acquiring of relevant genotype data. The global COVID-19 pandemic has disrupted local African research laboratory genotyping. Once a robust and consistent genotyping infrastructure is re-activated, we will complete the genotyping of these study samples. In tandem with the clinical research capacity demonstrated in this work, we continue to build local expertise in molecular genetics, clinical research skills, data analysis, and a biorepository for patient cohort samples.

Conclusion

Our study addresses an important disease in pregnancy with significant morbidity and mortality that has not been well studied in large populations in Africans with a high burden of preeclampsia and APOL1 high risk genotypes. Despite the difficulties in the recruitment of mother-baby dyad in a low middle income country as well as the sudden emergence of COVID-19 pandemic which brought recruitment to a standstill, our study has been successful in recruiting more than 700 participants within the last 26 months. The results obtained from our study will assist in developing genetic tools to predict risk of preeclampsia in women of African ancestry worldwide, with direct impact on the clinical care during pregnancy and perinatal outcomes as well as reducing maternal fatality.

Acknowledgments

We are grateful to all research assistants, nurses and laboratory technicians for their contribution to the study, especially Portia Antwi, Richard Darko, Nancy Yeboah, Alberta Nimako, Theresa Quartey, Joshua Quarshie, Mario Rashid Kadiah and Millicent Arhen. We also would like to thank the patients for their help.

Data Availability

All relevant data are within the paper.

Funding Statement

CO- Fogarty International Center of the National Institutes of Health under Award Number K43TW011160. The funders had and will not have a role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Vicente Sperb Antonello

20 Jun 2022

PONE-D-22-07467APOL1 Genotype Associated Risk for Preeclampsia in African populations: Rationale and protocol design for studies in women of African ancestry in resource limited settingsPLOS ONE

Dear Dr. OSAFO,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: No

Reviewer #2: Yes

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Descriptions of methods and materials in the protocol should be reported in sufficient detail for another researcher to reproduce all experiments and analyses. The protocol should describe the appropriate controls, sample size calculations, and replication needed to ensure that the data are robust and reproducible.

Reviewer #1: No

Reviewer #2: Yes

**********

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Reviewer #1: Yes

Reviewer #2: No

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: General comments:

This is a well-powered study to assess the role of fetal and maternal APOL1 renal risk variants in the development of preeclampsia in a West African setting. The authors also will be measuring a number of biomarkers but make no mention on how these will be used in the analyses. The authors mention, but do not elaborate on a longitudinal component to assess maternal events in mothers experiencing preeclampsia but this is not developed in the manuscript. Critical details on biomarkers, placental histology, and definitions of outcomes and events are not provided. Any information about statistical tests would be helpful.

Abstract:

Methods: The study will not recruit all pregnant – there are exclusion criteria. Change all to only or just delete all/

Introduction:

Common variants in the apolipoprotein L-1 gene (APOL1) only found on African

chromosomes termed G1 and G2, are potent risk factors for a spectrum of kidney diseases (14) but very rare in European ancestry individuals. This sentence needs to be re-written, the haplotypes are termed G1 and G2—not the chromosomes.

There is a strong relationship between kidney function and hypertension (15, 16) and looking at the uniqueness of the APOL1 gene to people of African descent, an in-depth role of this gene in preeclampsia in indigenous African women will be key to understanding preeclampsia genetics and biomarker innovations. Uniqueness seems like the wrong word here and sentence construction is awkward—try rewriting. I would suggest replacing with “and considering the importance of the APOL1 gene to people of African descent,…” and adding …and advance biomarker innovations.

Define high-risk genotype at first usage.

Among populations from Nigeria and Ghana, the APOL1 high-risk genotype frequency approaches 13% among those with kidney disease. What is the overall frequency of high-risk genotypes?

It is known that preeclampsia results in part from microangiopathy in the glomerulus of the kidney suggesting a potentially important role of APOL1in preeclampsia (19, 20). This statement should be supported by briefly stating the evidence that APOL1 is associated with (micro)angiopathy. There is other evidence suggesting a role for APOL1 in preeclampsia: mouse model with APOL1 placental expression with preclampsia and fetal wasting, higher circulating antibodies against APOL1 in preclampsia mothers.

The studies did not confer a 2-fold risk for preclampsia, APOL1 did. Please revise sentence.

Most studies have been African Americans and sampling has been mostly underpowered.

This statement should be toned down. Strengths of the two studies is that one had a replication cohort, which showed similar strong effect sizes and was powered at nearly 80% to detect OR>1.8 and the second was well powered. In aggregate these studies provide convincing evidence that APOL1 risk alleles increase risk of preeclampsia in African Americans. This study should allow a more precise OR and give some idea of the penetrance in African populations experiencing different demographics and environmental stressors than African descendants living in the USA.

Study Details

Aims and objectives:

Aim 2 is to determine perinatal outcomes, but elsewhere it is hinted that there will be 3 yrs follow-up of mothers to assess longitudinal outcomes—but this not mentioned. What is the aim and hypothesis and outcomes/events that will be measured for the follow-up?

Study design/population

The authors state that the main recruiting facility is in Ghana—are there others and have they been IRB approved? Or do they mean the only facility is at the KMTH?

Inclusion and exclusion criteria (Table 1): what is the justification for excluding women with a prior history—most of the participants are multiparious. Excluding mothers with prior history might under-estimate the true effect size of APOL1 risk genotypes.

Ethnicity:

5 ethnicities are listed, all with the potential of having different APOL1 allele frequencies. Have the investigators ascertained the allele frequencies for these different populations? How will population stratification be handled in the analyses? For example the high risk allele frequency among Hausa is ~7% , Akan 42%, Ga 21% and Ewe 28%.

Sample handling:

This section is less about sample handling and more about technology for documentation. Are the study participants the same as enrolled in an earlier study? Why given identifiers from an earlier study, presumably with the same investigators. It would make more sense to give each participant a unique identifier which identified both the study and the participant to avoid mix-ups in freezers or over time.

Will samples be barcoded—essential to reduce sample id errors. There is considerable detail about pitfalls and solutions to recruitment and sample collection, but not much detail of how samples will be stored, QC measures, etc.

Biomarkers:

More details about biomarkers—what are the specific biomarkers that will be quantified? At what time points. This protocol design will be used as a reference for the study design and protocol for ancillary studies in the future—more detail is needed. Details of study could go into supplementary data. Where will testing for these biomarkers be done?

Quality control:

Will creatinine and albumin be assessed at multiple time points? How will QC be implemented; how will consistency between labs and with labs over time be ascertained? How will CKD or other outcomes be defined for mother follow-up studies? Will two uACR and creatinine levels be collected at least 3 months apart? Will random duplicate samples be collected to validate laboratory consistency over time?

The section on pitfalls on recruitment and how they were overcome is useful, but could be shortened. More information on laboratory and histology would be welcome. For example, what section of placenta will be collected, how will this be standardized across time, and is there a pathologist specializing in placental pathology on the team.

Expand on the longitudinal arm of the study—what incident outcomes/events will be captured? Will all mothers be followed? Is this a stated aim of the study? What analyses will be performed?

What platform will be used to call APOL1 alleles. Will the genotyping be performed in Ghana or the USA? What is the capacity building plan for this study in Ghana?

Overall: This is a compelling and important study, but this reviewer finds the rationale and protocol design to be overly descriptive and short on technical details, particularly for details about timing of sample collection for biomarkers, laboratory protocols, and QC protocols, which would be helpful to investigators interested in ancillary studies or citing this study. A table listing the biomarkers for preeclampsia, kidney function, inflammation and time points for collection would be extremely helpful.

Reviewer #2: 1. Page 11 (numbers indicate overall page number in the pdf): Please clarify whether the study included early onset vs late onset preeclampsia – were both groups approached for enrollment?

2. Page 11: c/c study design of 700 cases and 700 controls. this should be clarified as the targe number, and an presentation of the interim enrollment number. It should be clarified that this was 1400 is the goal and that they only enrolled sl more than half of each intended group at the current time

Pages 12/13- refer to figures which are not included

Page 13: in what % of deliveries wase cord blood unavailable/not obtained? Similarly for placental tissue- in what percent of their current sample was it available.

Page 13: what are ‘endothelial markers for mother and child’?

Table 2: clarify what is meant by the titles: @20 and @30 weeks. Is this time of enrollment, time of onset of dx, time of delivery? this is unclear

similarly in table 2: please clarify what is meant by booking vs diagnosis (table 2)

Table2: lots of missing data – explain why this is the case?

there are some patients with a prior hx of PE when first onset was the criteria? What do the authors plan to do with them?

What birth defects were included?

Page 18: what do they mean by 1033 ‘data collection tools; have been obtained? They probably mean values, not tools.

Page 19: at the beginning of recruitment patients were ..recruited early in their pregnancy – but then they modified the recruitment strategy to make sure the time between recruitment and delivery did not take too long.The authors should discuss the implications of this approach, as I believe it will weight the cohort more towards late-onset preeclampsia

**********

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Reviewer #1: No

Reviewer #2: No

==============================

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Academic Editor

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PLoS One. 2022 Dec 29;17(12):e0278115. doi: 10.1371/journal.pone.0278115.r002

Author response to Decision Letter 0


11 Sep 2022

Dear Dr. Antonello,

Thank you for all the reviews, the input has been valuable in improving the manuscript.

Please find below our responses to the reviewers comments. Our responses are marked red in the document.

Yours sincerely,

Charlotte Osafo MBCHB, FWACP, FGCPS, MS

Authors Responses to Reviewers’ comments:

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: General comments:

This is a well-powered study to assess the role of fetal and maternal APOL1 renal risk variants in the development of preeclampsia in a West African setting. The authors also will be measuring a number of biomarkers but make no mention on how these will be used in the analyses. The authors mention, but do not elaborate on a longitudinal component to assess maternal events in mothers experiencing preeclampsia but this is not developed in the manuscript. Critical details on biomarkers, placental histology, and definitions of outcomes and events are not provided. Any information about statistical tests would be helpful.

For the current study (K43 Career development award), funding was sought to explore the links between genetic variants and preeclampsia in people of West African descent. During the course of the study, we recognized the importance of establishing an accompanying biorepository, which will be available for future study in this well characterized cohort. We plan to develop a competitive RO1 grant application to measure biomarkers, conduct placental histology and also follow up both the babies and their mothers to determine the incidence of chronic kidney disease and other non-communicable diseases. For the biorepository, serum, urine, whole blood, as well as placenta samples are stored at -80 degrees Celsius for future biomarker measurement, placental histology etc. In this current study, we are funded to measure clinical laboratory tests including a full blood count, serum creatinine, urine albumin to creatinine ratio and liver function tests.

Abstract:

Methods: The study will not recruit all pregnant – there are exclusion criteria. Change all to only or just delete all/

We have deleted all

Introduction:

Common variants in the apolipoprotein L-1 gene (APOL1) only found on African

chromosomes termed G1 and G2, are potent risk factors for a spectrum of kidney diseases (14) but very rare in European ancestry individuals. This sentence needs to be re-written, the haplotypes are termed G1 and G2—not the chromosomes.

We have rewritten the sentence to capture haplotypes

There is a strong relationship between kidney function and hypertension (15, 16) and looking at the uniqueness of the APOL1 gene to people of African descent, an in-depth role of this gene in preeclampsia in indigenous African women will be key to understanding preeclampsia genetics and biomarker innovations. Uniqueness seems like the wrong word here and sentence construction is awkward—try rewriting. I would suggest replacing with “and considering the importance of the APOL1 gene to people of African descent,…” and adding …and advance biomarker innovations.

We have undertaken the necessary changes as requested by the reviewer.

Define high-risk genotype at first usage.

High-risk genotypes were defined as requested.

Among populations from Nigeria and Ghana, the APOL1 high-risk genotype frequency approaches 13% among those with kidney disease. What is the overall frequency of high-risk genotypes?

It is known that preeclampsia results in part from microangiopathy in the glomerulus of the kidney suggesting a potentially important role of APOL1in preeclampsia (19, 20). This statement should be supported by briefly stating the evidence that APOL1 is associated with (micro)angiopathy. There is other evidence suggesting a role for APOL1 in preeclampsia: mouse model with APOL1 placental expression with preclampsia and fetal wasting, higher circulating antibodies against APOL1 in preclampsia mothers.

We have modified the statement to include the evidence

The studies did not confer a 2-fold risk for preclampsia, APOL1 did. Please revise sentence.

Sentence has been revised

Most studies have been African Americans and sampling has been mostly underpowered. This statement should be toned down.

The statement has been toned down

Strengths of the two studies is that one had a replication cohort, which showed similar strong effect sizes and was powered at nearly 80% to detect OR>1.8 and the second was well powered. In aggregate these studies provide convincing evidence that APOL1 risk alleles increase risk of preeclampsia in African Americans. This study should allow a more precise OR and give some idea of the penetrance in African populations experiencing different demographics and environmental stressors than African descendants living in the USA.

We have amended the sentence

Study Details

Aims and objectives:

Aim 2 is to determine perinatal outcomes, but elsewhere it is hinted that there will be 3 yrs follow-up of mothers to assess longitudinal outcomes—but this not mentioned. What is the aim and hypothesis and outcomes/events that will be measured for the follow-up? We have added the proposed longitudinal follow up as aim 3

Study design/population

The authors state that the main recruiting facility is in Ghana—are there others and have they been IRB approved? Or do they mean the only facility is at the KMTH?

Korle Bu Teaching Hospital is the largest referral center in Ghana and it is the only recruiting facility. However, the IRB obtained has federal wide coverage and can be leveraged to recruit at other facilities in Ghana if the need arises.

Inclusion and exclusion criteria (Table 1): what is the justification for excluding women with a prior history—most of the participants are multiparious. Excluding mothers with prior history might under-estimate the true effect size of APOL1 risk genotypes.

In addition to genetic risk, there are a number of other confounding factors such as socioeconomic status, concomitant hypertension, etc. If we include women who have history of preeclampsia, we are concerned about the need to assess for risk for recurrent preeclampsia with additional confounding versus initial episode of preeclampsia. We could conduct stratified analyses, however, we recognized that there was limited funding to adequately power each group. Hence, we simplified the study approach to first episode of preeclampsia.

Ethnicity:

5 ethnicities are listed, all with the potential of having different APOL1 allele frequencies. Have the investigators ascertained the allele frequencies for these different populations? How will population stratification be handled in the analyses? Population stratification will be handled through individual analysis to take out confounding effects and use pooled data. For example the high risk allele frequency among Hausa is ~7% , Akan 42%, Ga 21% and Ewe 28%. A recent study has should genotype distribution among some ethnic groups. Blazer A, Dey ID, Nwaukoni J, Reynolds M, Ankrah F, Algasas H, Ahmed T, Divers J. Apolipoprotein L1 risk genotypes in Ghanaian patients with systemic lupus erythematosus: a prospective cohort study. Lupus Sci Med. 2021 Jan;8(1):e000460. doi: 10.1136/lupus-2020-000460. PMID: 33461980; PMCID: PMC7816898

Sample handling:

This section is less about sample handling and more about technology for documentation.

We have put all the subheadings together under Recruitment Strategy

Are the study participants the same as enrolled in an earlier study?

The same investigators undertook an initial pilot study where 100 participants were enrolled. These participants will be added to the 1400 who are being recruited

Why given identifiers from an earlier study, presumably with the same investigators.

The identifiers are a continuation from the initial 100 individuals who were recruited into the pilot study

It would make more sense to give each participant a unique identifier which identified both the study and the participant to avoid mix-ups in freezers or over time.

Each participant has been given a unique identifier together with their respective babies for easy identification. There is barcoding of all samples with dedicated freezer space

Will samples be barcoded—essential to reduce sample id errors. There is considerable detail about pitfalls and solutions to recruitment and sample collection, but not much detail of how samples will be stored, QC measures, etc.

Samples are given unique barcodes for easy identification.

Biomarkers:

More details about biomarkers—what are the specific biomarkers that will be quantified? At what time points. This protocol design will be used as a reference for the study design and protocol for ancillary studies in the future—more detail is needed. Details of study could go into supplementary data. Where will testing for these biomarkers be done?

Please refer to response comments . We have added table 2 which has the biomarkers that will be measured in future studies when funding is available. In this present study, we are not funded to measure preeclampsia biomarkers. When funding is available, these biomarkers will be measured in a research facility available to the research team. The two facilities are Noguchi Memorial Institute for Medical Research and MDS Lancet Laboratory.

Quality control:

Will creatinine and albumin be assessed at multiple time points? How will QC be implemented; how will consistency between labs and with labs over time be ascertained? How will CKD or other outcomes be defined for mother follow-up studies? Will two uACR and creatinine levels be collected at least 3 months apart? Will random duplicate samples be collected to validate laboratory consistency over time?

For the longitudinal study (which will be undertaken when funding is available), creatinine and UACR will be assessed annually at the MDS Lancet Laboratory.

Random duplicated samples will be collected to validate the measurements and/or specimens will be divided for replication analyses of any biomarkers

.

The section on pitfalls on recruitment and how they were overcome is useful, but could be shortened. More information on laboratory and histology would be welcome. For example, what section of placenta will be collected, how will this be standardized across time, and is there a pathologist specializing in placental pathology on the team.

The section has been shortened. Section of placenta that will be collected has been added as requested. Research assistants follow a standardized protocol for collecting placental samples, which was added. There is no pathologist included in the current study. However, a placental pathologist will be included in the next phase of the project when funds are available.

Expand on the longitudinal arm of the study—what incident outcomes/events will be captured? Will all mothers be followed? Is this a stated aim of the study? What analyses will be performed?

The longitudinal arm of the study is yet to be developed. We plan to follow up all mothers and their babies. Please refer to response under general comments

What platform will be used to call APOL1 alleles. Will the genotyping be performed in Ghana or the USA? What is the capacity building plan for this study in Ghana?

We have added a statement of where and how genotyping will be achieved. The TaqMan assay is a predesigned genotyping method that contain target specific primers and probes that are linked to the various alleles. These probes (one with a FAM dye label and one with a VIC dye label ) which emit a flourescent signal. A qPCR thermal cycler which in our case will be the CFX-96 thermal cycler will be programmed to read the signal. The genotypes come out as graphical output after using allelic discrimination as call method. Homozygous allele will all be on one side for wild type and mutant while heterozygous alleles will align in the centre. The data can be exported to excel for further analysis. There are QC checks for this procedure so it is robust and validation can be undertaken with Sanger sequencing.

Overall: This is a compelling and important study, but this reviewer finds the rationale and protocol design to be overly descriptive and short on technical details, particularly for details about timing of sample collection for biomarkers, laboratory protocols, and QC protocols, which would be helpful to investigators interested in ancillary studies or citing this study. A table listing the biomarkers for preeclampsia, kidney function, inflammation and time points for collection would be extremely helpful.

We have added Table 2 which summarizes the biomarkers with time points for collection to help easy understanding

Reviewer #2: 1. Page 11 (numbers indicate overall page number in the pdf): Please clarify whether the study included early onset vs late onset preeclampsia – were both groups approached for enrollment?

Both early onset and late onset groups were initially approached for enrollment. However due to difficulty in following up the early onset cases, we focused more on the late onset group.

2. Page 11: c/c study design of 700 cases and 700 controls. this should be clarified as the targe number, and an presentation of the interim enrollment number. It should be clarified that this was 1400 is the goal and that they only enrolled sl more than half of each intended group at the current time

Pages 12/13- refer to figures which are not included

We have deleted the Fig 5 from the statement

Page 13: in what % of deliveries wase cord blood unavailable/not obtained? Similarly for placental tissue- in what percent of their current sample was it available.

The actual numbers have been provided in the Figure 3 for cord blood samples missed which commensurate with the placenta samples. We have added a statement on the percentages.

Page 13: what are ‘endothelial markers for mother and child’?

Endothelial markers include tissue plasminogen activator, von Willebrand factor activity and antigen. However, we have deleted the “ endothelial markers for mother and child” since we do not have funding to measure that in the current study.

Table 2: clarify what is meant by the titles: @20 and @30 weeks. Is this time of enrollment, time of onset of dx, time of delivery? this is unclear

These are the gestational ages at which the measurements were undertaken, which is also the time of enrollment.

similarly in table 2: please clarify what is meant by booking vs diagnosis (table 2)

Booking’ refers to the time the pregnant woman first reported for antenatal care .

'Diagnosis’ is the time the pregnant woman was diagnosed with preeclampsia or the time the normotensive pregnant woman was recruited as control into the study.

Table2: lots of missing data – explain why this is the case?

The missing data has to do with the data collectors who had not uploaded the data to the RedCap server as at the time of writing this manuscript. Also some of the folders were not available to extract the data required

there are some patients with a prior hx of PE when first onset was the criteria? What do the authors plan to do with them?

The data will be stratified during analysis and controlled for as part of analysis.

What birth defects were included?

These were generalised birth defects such as Congenital Heart Disease, chromosomal abnormalities, neural tube defects.

Page 18: what do they mean by 1033 ‘data collection tools; have been obtained? They probably mean values, not tools.

This means the data collection questionnaire was made up of 1033 itemised questions or values

Page 19: at the beginning of recruitment patients were ..recruited early in their pregnancy – but then they modified the recruitment strategy to make sure the time between recruitment and delivery did not take too long.The authors should discuss the implications of this approach, as I believe it will weight the cohort more towards late-onset preeclampsia

This is true. It will weigh the cohort toward late onset however, the medical history of the patient will still inform us on the early onset of the patient we have recruited. WE may likely have two groups of early onset and late onset pre-eclamptic patients.

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Reviewer #1: No

Reviewer #2: No

==============================

Please submit your revised manuscript by Aug 04 2022 11:59P

Attachment

Submitted filename: Response to Reviewers [33].pdf

Decision Letter 1

Vicente Sperb Antonello

17 Oct 2022

PONE-D-22-07467R1APOL1 Genotype Associated Risk for Preeclampsia in African populations: Rationale and protocol design for studies in women of African ancestry in resource limited settingsPLOS ONE

Dear Dr. OSAFO,

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PLOS ONE

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Additional Editor Comments:

APOL1 Genotype Associated Risk for Preeclampsia in African populations: Rationale and protocol design for studies in women of African ancestry in resource limited settings

After careful evaluation of the article and data from by reviewers, I understand that the article should pass through a minor revision to be accepted into Plos One. Please check the reviewers´ recommendations and adjust in the present article.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

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**********

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**********

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**********

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Reviewer #1: The authors have addressed this reviewer's comments. I have only two minor edits: APOL1 when referring to the gene is always italicized; when referring to the protein it is not. Please correct in abstract and throughout text

Preeclampsia is a disease and is therefore not capitalized in abstract and elsewhere.

Reviewer #2: I believe the authors have addressed the reviewer's initial comments satisfactorily. There are two areas that could use some additional clarification (but not re-review). First, limiting the sample to women without a history of preeclampsia removes from the population women who might have recurrent preeclampsia due to their (or their fetus's) APOL1 status. This would result in an underestimate of the relationship between apol1 and preeclampsia generally, and is worthy of a statement to this regard in the discussion.

Second, there is still a little confusion in the manuscript about when the maternal blood draw occurs. According to table 2, biomarkers and blood samples are taken at recruitment, but I believe that they are actually taken at delivery (as stated in the section above entitled 'Sample collection and laboratory assays'. it would be good to go thru the manuscript one last time and clarify exactly when these samples are obtained.

**********

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PLoS One. 2022 Dec 29;17(12):e0278115. doi: 10.1371/journal.pone.0278115.r004

Author response to Decision Letter 1


18 Oct 2022

October 18, 2022

Dear Dr. Antonello,

Thank you for all the reviews, the input has been valuable in improving the manuscript.

Please find below our responses to the reviewers comments. Our responses are marked red in the document.

Yours sincerely,

Charlotte Osafo MBCHB, FWACP, FGCPS, MS

Review Comments to the Author

Reviewer #1: The authors have addressed this reviewer's comments. I have only two minor edits: APOL1 when referring to the gene is always italicized; when referring to the protein it is not. Please correct in abstract and throughout text

We have italicised all APOL1 genes

Preeclampsia is a disease and is therefore not capitalized in abstract and elsewhere.

We have done as suggested.

Reviewer #2: I believe the authors have addressed the reviewer's initial comments satisfactorily. There are two areas that could use some additional clarification (but not re-review). First, limiting the sample to women without a history of preeclampsia removes from the population women who might have recurrent preeclampsia due to their (or their fetus's) APOL1 status. This would result in an underestimate of the relationship between apol1 and preeclampsia generally, and is worthy of a statement to this regard in the discussion.

We have included a statement to that effect “This may result in an underestimate of the relationship between APOL1 and preeclampsia”.

Second, there is still a little confusion in the manuscript about when the maternal blood draw occurs. According to table 2, biomarkers and blood samples are taken at recruitment, but I believe that they are actually taken at delivery (as stated in the section above entitled 'Sample collection and laboratory assays'. it would be good to go thru the manuscript one last time and clarify exactly when these samples are obtained.

We have taken a look and we are ok with the version displayed in the mansucript

Attachment

Submitted filename: response to reviewers.pdf

Decision Letter 2

Vicente Sperb Antonello

10 Nov 2022

APOL1 Genotype Associated Risk for Preeclampsia in African populations: Rationale and protocol design for studies in women of African ancestry in resource limited settings

PONE-D-22-07467R2

Dear Dr. OSAFO,

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Academic Editor

PLOS ONE

Additional Editor Comments (optional):

APOL1 Genotype Associated Risk for Preeclampsia in African populations: Rationale and protocol design for studies in women of African ancestry in resource limited settings

Regarding the present manuscript, all reviewers' notes have been clarified and I believe that this article should be accepted for publication in Plos One.

Acceptance letter

Vicente Sperb Antonello

14 Nov 2022

PONE-D-22-07467R2

APOL1 genotype associated risk for preeclampsia in African populations: Rationale and protocol design for studies in women of African ancestry in resource limited settings

Dear Dr. Osafo:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

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Academic Editor

PLOS ONE

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    Submitted filename: Response to Reviewers [33].pdf

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    Submitted filename: response to reviewers.pdf

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