Iclaprim and mesylate molecules are linked into a hydrogen-bonded molecular tape, the central section of which is composed of fused rings.
Keywords: crystal structure, hydrogen bonding, pharmaceuticals
Abstract
The title compound, 2,6-diamino-5-[(2-cyclopropyl-7,8-dimethoxy-2H-1-benzopyran-5-yl)methyl]pyrimidin-1-ium methanesulfonate, C19H23N4O3 +·CH3O3S−, is a salt made up from a protonated iclaprim molecule and a mesylate anion. The pyrimidine and chromene units of the iclaprim molecule form an orthogonal arrangement [interplanar angle of 89.67 (6)°], and the 3-nitrogen position of the pyrimidine ring is protonated. Four distinct N—H⋯O interactions and an additional N—H⋯N hydrogen bond connect iclaprim and mesylate molecules to one another, resulting in an infinite hydrogen-bonded molecular tape structure. The central section of the tape is formed by a sequence of fused hydrogen-bonded rings involving four distinct ring types.
1. Chemical context
Iclaprim is a dihydrofolate reductase (DHFR) inhibiting antibiotic containing a 2H-chromene structure that targets Gram-positive bacteria (Masciadri, 1997 ▸). The current study is part of an investigation aimed at improving the synthetic route to iclaprim and accessing its salts (Nerdinger et al., 2020 ▸).
Iclaprim was synthesized according to the original route described by Jaeger et al. (2005 ▸), using 3-hydroxy-4,5-dimethoxybenzaldehyde (Cervi et al., 2013 ▸), which was further purified by recrystallization from ethanol/n-hexane. We achieved a much better purity by trituration in hot ethanol and subsequent recrystallization from boiling acetonitrile. The title compound, (I), is the corresponding mesylate salt, and it was produced in a subsequent step.
2. Structural commentary
The asymmetric unit of (I) consists of one formula unit, composed of an CH3SO3 − anion and an iclaprim cation in which the 3-nitrogen atom of the pyrimidine ring is protonated, i.e. N1 (Fig. 1 ▸). The molecular conformation of the iclaprim molecule is largely defined by the relative arrangement of the essentially planar pyrimidine and chromene units. The CH2 carbon atom C5 links the pyrimidine ring (C1, N1, C2, N2, C3, C4) with the fused benzene ring of the chromene unit (C6, C7, C8, C9, C10, C11). With regard to the two bridging bonds, the torsion angles C3—C4—C5—C6 [–160.8 (2)°] and C4—C5—C6—C7 [–96.5 (3)°] indicate that the C5—C6 bond is twisted slightly out of the pyrimidine plane, whilst the C4—C5 bond is oriented approximately perpendicular to the benzene ring. Accordingly, the two six-membered rings linked via C5 form an orthogonal arrangement with an interplanar angle of 89.67 (6)°. In the chromene moiety, the 7-methoxy substituent is significantly twisted out of the ring plane [C10—C9—O3—C19 = −70.3 (3)°], whilst the 8-methoxy substituent is almost coplanar with the plane of the fused benzene ring [C9—C8—O2—C18 = 167.6 (2)°]. The 2H-pyran ring displays the expected bond lengths [C12—C13 = 1.323 (4) Å]. The program PLATON (Spek, 2020 ▸) was used to calculate puckering parameters (Cremer & Pople, 1975 ▸) for the 2H-pyran ring. The obtained values, θ = 65.5 (7)°, φ = 328.4 (7)° and q = 0.253 (3) Å, are consistent with the presence of a skew-boat conformation (Boeyens, 1978 ▸).
Figure 1.
The structures of the molecular entities with displacement ellipsoids drawn at the 50% probability level and hydrogen atoms drawn as spheres of arbitrary size.
3. Supramolecular features
The iclaprim molecule displays two NH2 groups attached to the pyrimidine ring (N3, N4) and the protonated N1 atom of the pyrimidine ring as potential hydrogen-bond donor groups. These hydrogen-bond donor functions are engaged in five distinct intermolecular N—H⋯A interactions (Table 1 ▸). N1 and N3 are linked to two O sites, each belonging to the same mesylate anion, i.e. N1—H1N⋯O4i and N3—H3A⋯O5i. In Fig. 2 ▸, the resulting ring motif is denoted as a, and it has the graph-set symbol
(8) (Etter et al., 1990 ▸; Bernstein et al., 1995 ▸). N3 is additionally linked, via an N3—H3B⋯O5ii interaction, to a second mesylate unit. The resulting centrosymmetric ring b (Fig. 2 ▸) comprises two iclaprim and two mesylate units (with O5 accepting two hydrogen bonds) and is described by the symbol
(8). The second NH2 group forms an N4—H4B⋯O6 interaction with a mesylate anion, and it is also hydrogen-bonded to the unprotonated pyrimidine N atom of a second iclaprim molecule via N4—H4A⋯N2ii. The latter two interactions generate two additional ring motifs, namely the
(10) ring c linking two pyrimidine molecules with one anion and the centrosymmetric
(8) ring d. The diagram in Fig. 2 ▸ illustrates that certain hydrogen-bonded rings are fused together because of shared N—H⋯A interactions, i.e. a + b, b + c and c + d. Altogether, the five distinct interactions listed in Table 1 ▸ result in a one-dimensional extended molecular tape structure of hydrogen-bonded iclaprim and mesylate units propagating parallel to [
10]. The iclaprim molecule is bonded to two different mesylate anions, one is a two-point and the other a one-point connection. It is also two-point connected to a neighbouring iclaprim molecule. In turn, the mesylate anion accepts four hydrogen-bonds from three iclaprim molecules, and all of its O atoms participate in hydrogen bonding.
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1N⋯O4i | 0.85 (3) | 1.99 (3) | 2.827 (2) | 168 (3) |
| N3—H3A⋯O5i | 0.86 (2) | 2.06 (2) | 2.896 (3) | 166 (2) |
| N3—H3B⋯O5ii | 0.87 (2) | 2.15 (2) | 2.871 (3) | 140 (2) |
| N4—H4A⋯N2ii | 0.87 (2) | 2.27 (2) | 3.107 (3) | 163 (2) |
| N4—H4B⋯O6 | 0.86 (2) | 2.11 (2) | 2.948 (3) | 163 (2) |
Symmetry codes: (i)
; (ii)
.
Figure 2.
Tape structure composed of N—H⋯O and N—H⋯N-bonded iclaprim and mesylate molecules, based on four essential ring motifs (a–d). [Symmetry codes: (i) x − 1, y + 1, z; (ii) −x, −y + 1, −z; (iii) −x − 1, y + 2, z.]
4. Database survey
The Cambridge Structural Database (version 5.43, September 2022; Groom et al., 2016 ▸) contains two other examples of molecules displaying the 7,8-dimethoxy-2H-chromene fragment, namely methylripariochromene A (Guerin et al., 1989 ▸; CSD refcode JAZLIF) and 6,7,8-trimethoxycoumarin (Saidi et al., 2007 ▸; CSD refcode KIKDOY). In each case, the 7- and 8-methoxy substituents are significantly twisted out of the ring plane as shown by the corresponding torsion angles, i.e. molecule A of JAZLIF: 63.4°,–66.2°; molecule B of JAZLIF: −140.2°, 89.4°; KIKDOY: 88.0, −110.9°.
5. Synthesis and crystallization
Iclaprim mesylate was prepared according to a modified procedure based on the original synthesis by Jaeger et al. (2005 ▸) shown in Fig. 3 ▸. The iclaprim free base (500 mg, 1.41 mmol) was suspended in 75 ml of acetonitrile and heated to reflux. The resulting clear solution was slowly cooled to room temperature overnight and then kept at 253 K to complete the crystallization process. The resulting white solid was isolated by filtration and dried under high vacuum at room temperature. The obtained iclaprim free base (1.00 g, 2.82 mmol) was recrystallized in acetonitrile and was suspended in 35 ml of ethanol and heated to reflux. Heating was interrupted and a solution of 183 ml methylsulfonic acid (2.82 mmol) in 5 ml of ethanol was added in a dropwise manner. Refluxing was resumed and a further 10 ml of ethanol were added to obtain a clear solution. The solution was concentrated and allowed to cool slowly to room temperature, at which point aggregates of colourless columnar crystals started to form. The crystals were isolated via filtration and dried under high vacuum overnight; yield: 900 mg (71%).
Figure 3.
Synthesis scheme to prepare iclaprim.
6. Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The structure was refined as a two-component twin with the components being related by a 179.9° rotation about the a axis. The refined value of the minor twin component fraction was 0.260 (1). All H atoms were identified in difference-Fourier maps and those of NH and NH2 groups were refined with a restrained N—H distance of 0.88 (2) Å and their U iso parameters refined freely. The H atoms at the cyclopropyl ring (C15, C16, C17) were refined with a restrained C—H distance of 0.96 (2) Å and with U iso(H) = 1.2U eq(C). Other H atoms bonded to secondary CH2 (C—H = 0.98 Å) or aromatic CH (C—H = 0.94 Å) carbon atoms were positioned geometrically. Their U iso parameters were set to 1.2U eq(C). Methyl H atoms were idealized and included as rigid groups allowed to rotate but not tip (C—H = 0.97 Å) and their U iso parameters were set to 1.5 U eq(C) of the parent carbon atom.
Table 2. Experimental details.
| Crystal data | |
| Chemical formula | C19H23N4O3 +·CH3O3S− |
| M r | 450.51 |
| Crystal system, space group | Triclinic, P
|
| Temperature (K) | 223 |
| a, b, c (Å) | 5.4726 (3), 8.8450 (4), 22.1395 (11) |
| α, β, γ (°) | 98.094 (2), 93.754 (2), 98.919 (2) |
| V (Å3) | 1043.98 (9) |
| Z | 2 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.20 |
| Crystal size (mm) | 0.21 × 0.18 × 0.03 |
| Data collection | |
| Diffractometer | Bruker D8 QUEST PHOTON 100 |
| Absorption correction | Multi-scan (TWINABS; Bruker, 2013 ▸) |
| T min, T max | 0.910, 0.971 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 3851, 3851, 3507 |
| (sin θ/λ)max (Å−1) | 0.604 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.043, 0.104, 1.08 |
| No. of reflections | 3851 |
| No. of parameters | 320 |
| No. of restraints | 10 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.57, −0.31 |
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989022011689/wm5666sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989022011689/wm5666Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989022011689/wm5666Isup3.cml
CCDC reference: 2224639
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
Crystal data
| C19H23N4O3+·CH3O3S− | Z = 2 |
| Mr = 450.51 | F(000) = 476 |
| Triclinic, P1 | Dx = 1.433 Mg m−3 |
| a = 5.4726 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 8.8450 (4) Å | Cell parameters from 9886 reflections |
| c = 22.1395 (11) Å | θ = 2.3–25.3° |
| α = 98.094 (2)° | µ = 0.20 mm−1 |
| β = 93.754 (2)° | T = 223 K |
| γ = 98.919 (2)° | Prism, colourless |
| V = 1043.98 (9) Å3 | 0.21 × 0.18 × 0.03 mm |
Data collection
| Bruker D8 QUEST PHOTON 100 diffractometer | 3851 measured reflections |
| Radiation source: Incoatec Microfocus | 3851 independent reflections |
| Multi layered optics monochromator | 3507 reflections with I > 2σ(I) |
| Detector resolution: 10.4 pixels mm-1 | θmax = 25.4°, θmin = 2.4° |
| φ and ω scans | h = −6→6 |
| Absorption correction: multi-scan (TWINABS; Bruker, 2013) | k = −10→10 |
| Tmin = 0.910, Tmax = 0.971 | l = −26→10 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.043 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.104 | w = 1/[σ2(Fo2) + (0.0406P)2 + 0.7995P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.08 | (Δ/σ)max = 0.001 |
| 3851 reflections | Δρmax = 0.57 e Å−3 |
| 320 parameters | Δρmin = −0.30 e Å−3 |
| 10 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.026 (3) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.3058 (4) | 0.7951 (2) | 0.38547 (8) | 0.0428 (5) | |
| O2 | 0.9479 (4) | 1.1480 (2) | 0.33158 (8) | 0.0413 (5) | |
| O3 | 0.6716 (4) | 1.0418 (2) | 0.41560 (7) | 0.0418 (5) | |
| N1 | 0.0557 (4) | 0.9523 (2) | 0.10508 (8) | 0.0239 (4) | |
| H1N | 0.015 (5) | 1.042 (3) | 0.1116 (12) | 0.035 (7)* | |
| N2 | 0.0189 (3) | 0.7157 (2) | 0.03914 (8) | 0.0240 (4) | |
| N3 | −0.2450 (4) | 0.8895 (2) | 0.02407 (10) | 0.0314 (5) | |
| H3A | −0.292 (5) | 0.976 (2) | 0.0359 (11) | 0.030 (7)* | |
| H3B | −0.318 (5) | 0.831 (3) | −0.0091 (10) | 0.041 (8)* | |
| N4 | 0.2945 (4) | 0.5524 (2) | 0.05307 (9) | 0.0296 (4) | |
| H4A | 0.215 (5) | 0.491 (3) | 0.0214 (10) | 0.042 (8)* | |
| H4B | 0.416 (4) | 0.528 (3) | 0.0742 (11) | 0.034 (7)* | |
| C1 | 0.2336 (4) | 0.9125 (2) | 0.14129 (10) | 0.0230 (5) | |
| H1 | 0.3024 | 0.9821 | 0.1765 | 0.028* | |
| C2 | −0.0565 (4) | 0.8502 (2) | 0.05556 (9) | 0.0219 (4) | |
| C3 | 0.2094 (4) | 0.6806 (2) | 0.07298 (9) | 0.0216 (4) | |
| C4 | 0.3182 (4) | 0.7772 (2) | 0.12931 (9) | 0.0210 (4) | |
| C5 | 0.5138 (5) | 0.7290 (3) | 0.17050 (10) | 0.0287 (5) | |
| H5A | 0.4704 | 0.6177 | 0.1715 | 0.034* | |
| H5B | 0.6731 | 0.7464 | 0.1527 | 0.034* | |
| C6 | 0.5457 (4) | 0.8135 (3) | 0.23546 (10) | 0.0263 (5) | |
| C7 | 0.7329 (4) | 0.9416 (3) | 0.25216 (10) | 0.0280 (5) | |
| H7 | 0.8359 | 0.9748 | 0.2226 | 0.034* | |
| C8 | 0.7705 (4) | 1.0212 (3) | 0.31165 (10) | 0.0291 (5) | |
| C9 | 0.6184 (5) | 0.9716 (3) | 0.35590 (10) | 0.0292 (5) | |
| C10 | 0.4339 (5) | 0.8453 (3) | 0.33923 (10) | 0.0289 (5) | |
| C11 | 0.3909 (5) | 0.7643 (3) | 0.27896 (10) | 0.0297 (5) | |
| C12 | 0.1991 (6) | 0.6280 (3) | 0.26835 (13) | 0.0480 (7) | |
| H12 | 0.1796 | 0.5622 | 0.2305 | 0.058* | |
| C13 | 0.0514 (6) | 0.5956 (3) | 0.31140 (14) | 0.0506 (8) | |
| H13 | −0.0684 | 0.5052 | 0.3038 | 0.061* | |
| C14 | 0.0691 (5) | 0.6975 (4) | 0.37117 (13) | 0.0477 (7) | |
| H14 | −0.0506 | 0.7688 | 0.3658 | 0.057* | |
| C15 | 0.0006 (7) | 0.6284 (4) | 0.42415 (16) | 0.0603 (9) | |
| H15 | 0.088 (6) | 0.537 (3) | 0.4274 (16) | 0.072* | |
| C16 | −0.0784 (9) | 0.7122 (6) | 0.47930 (19) | 0.0775 (11) | |
| H16A | −0.051 (8) | 0.687 (5) | 0.5200 (11) | 0.093* | |
| H16B | −0.082 (9) | 0.821 (3) | 0.4736 (19) | 0.093* | |
| C17 | −0.2553 (8) | 0.5873 (6) | 0.4384 (2) | 0.0800 (12) | |
| H17A | −0.310 (8) | 0.490 (3) | 0.4518 (19) | 0.096* | |
| H17B | −0.369 (7) | 0.614 (5) | 0.4075 (15) | 0.096* | |
| C18 | 1.1370 (5) | 1.1840 (3) | 0.29246 (12) | 0.0407 (6) | |
| H18A | 1.2567 | 1.2718 | 0.3128 | 0.061* | |
| H18B | 1.0637 | 1.2093 | 0.2549 | 0.061* | |
| H18C | 1.2199 | 1.0953 | 0.2830 | 0.061* | |
| C19 | 0.4888 (7) | 1.1252 (4) | 0.44003 (14) | 0.0568 (8) | |
| H19A | 0.5389 | 1.1668 | 0.4827 | 0.085* | |
| H19B | 0.3308 | 1.0562 | 0.4368 | 0.085* | |
| H19C | 0.4719 | 1.2095 | 0.4172 | 0.085* | |
| S1 | 0.73446 (11) | 0.29318 (6) | 0.12358 (2) | 0.02483 (16) | |
| O4 | 0.9826 (3) | 0.26069 (18) | 0.14030 (8) | 0.0348 (4) | |
| O5 | 0.5834 (3) | 0.16098 (19) | 0.08426 (8) | 0.0381 (4) | |
| O6 | 0.7365 (3) | 0.43739 (19) | 0.09992 (8) | 0.0362 (4) | |
| C20 | 0.5874 (5) | 0.3152 (3) | 0.19206 (11) | 0.0339 (6) | |
| H20A | 0.5974 | 0.2263 | 0.2127 | 0.051* | |
| H20B | 0.4145 | 0.3227 | 0.1827 | 0.051* | |
| H20C | 0.6694 | 0.4086 | 0.2185 | 0.051* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0498 (11) | 0.0446 (10) | 0.0295 (9) | −0.0066 (9) | 0.0072 (8) | 0.0039 (8) |
| O2 | 0.0414 (11) | 0.0421 (10) | 0.0327 (9) | −0.0078 (8) | 0.0035 (8) | −0.0043 (8) |
| O3 | 0.0470 (12) | 0.0497 (11) | 0.0230 (8) | 0.0026 (9) | 0.0004 (8) | −0.0070 (7) |
| N1 | 0.0272 (10) | 0.0169 (9) | 0.0275 (10) | 0.0082 (8) | −0.0012 (8) | 0.0003 (7) |
| N2 | 0.0252 (10) | 0.0222 (9) | 0.0236 (9) | 0.0068 (8) | −0.0005 (8) | −0.0014 (7) |
| N3 | 0.0311 (11) | 0.0299 (11) | 0.0323 (11) | 0.0133 (9) | −0.0084 (9) | −0.0021 (9) |
| N4 | 0.0301 (11) | 0.0273 (10) | 0.0288 (10) | 0.0134 (9) | −0.0077 (9) | −0.0094 (8) |
| C1 | 0.0248 (11) | 0.0207 (10) | 0.0221 (10) | 0.0037 (9) | −0.0009 (9) | −0.0002 (8) |
| C2 | 0.0227 (11) | 0.0224 (10) | 0.0214 (10) | 0.0048 (9) | 0.0037 (9) | 0.0041 (8) |
| C3 | 0.0221 (11) | 0.0206 (10) | 0.0217 (10) | 0.0036 (9) | 0.0026 (9) | 0.0018 (8) |
| C4 | 0.0222 (11) | 0.0204 (10) | 0.0201 (10) | 0.0041 (9) | 0.0025 (9) | 0.0013 (8) |
| C5 | 0.0334 (13) | 0.0278 (11) | 0.0256 (11) | 0.0133 (10) | −0.0025 (10) | −0.0002 (9) |
| C6 | 0.0306 (12) | 0.0270 (11) | 0.0226 (11) | 0.0145 (10) | −0.0033 (9) | 0.0003 (9) |
| C7 | 0.0283 (12) | 0.0320 (12) | 0.0247 (11) | 0.0085 (10) | 0.0025 (9) | 0.0040 (9) |
| C8 | 0.0291 (13) | 0.0280 (11) | 0.0288 (12) | 0.0052 (10) | −0.0027 (10) | 0.0017 (9) |
| C9 | 0.0342 (13) | 0.0318 (12) | 0.0205 (11) | 0.0071 (10) | −0.0019 (9) | 0.0005 (9) |
| C10 | 0.0348 (13) | 0.0284 (11) | 0.0251 (11) | 0.0090 (10) | 0.0017 (10) | 0.0059 (9) |
| C11 | 0.0321 (13) | 0.0267 (11) | 0.0291 (11) | 0.0064 (10) | −0.0038 (11) | 0.0020 (9) |
| C12 | 0.0526 (18) | 0.0426 (15) | 0.0401 (15) | −0.0066 (14) | 0.0002 (14) | −0.0057 (12) |
| C13 | 0.0493 (18) | 0.0459 (16) | 0.0488 (17) | −0.0112 (14) | 0.0013 (14) | 0.0034 (13) |
| C14 | 0.0366 (15) | 0.0582 (18) | 0.0450 (16) | −0.0016 (13) | 0.0020 (13) | 0.0079 (13) |
| C15 | 0.061 (2) | 0.0572 (19) | 0.062 (2) | −0.0019 (17) | 0.0203 (17) | 0.0109 (16) |
| C16 | 0.072 (3) | 0.097 (3) | 0.064 (2) | 0.002 (3) | 0.026 (2) | 0.019 (2) |
| C17 | 0.046 (2) | 0.112 (3) | 0.089 (3) | 0.002 (2) | 0.014 (2) | 0.048 (3) |
| C18 | 0.0365 (15) | 0.0428 (14) | 0.0404 (14) | −0.0013 (12) | 0.0012 (12) | 0.0081 (12) |
| C19 | 0.069 (2) | 0.0547 (18) | 0.0415 (16) | 0.0133 (17) | 0.0076 (15) | −0.0144 (13) |
| S1 | 0.0219 (3) | 0.0225 (3) | 0.0302 (3) | 0.0083 (2) | −0.0031 (2) | 0.0019 (2) |
| O4 | 0.0245 (9) | 0.0312 (8) | 0.0486 (10) | 0.0121 (7) | −0.0063 (8) | 0.0022 (7) |
| O5 | 0.0330 (9) | 0.0345 (9) | 0.0417 (10) | 0.0086 (8) | −0.0085 (8) | −0.0093 (7) |
| O6 | 0.0366 (10) | 0.0325 (9) | 0.0468 (10) | 0.0173 (8) | 0.0103 (8) | 0.0150 (7) |
| C20 | 0.0357 (14) | 0.0319 (12) | 0.0333 (13) | 0.0051 (11) | 0.0015 (11) | 0.0034 (10) |
Geometric parameters (Å, º)
| O1—C10 | 1.365 (3) | C10—C11 | 1.410 (3) |
| O1—C14 | 1.431 (3) | C11—C12 | 1.451 (4) |
| O2—C8 | 1.364 (3) | C12—C13 | 1.323 (4) |
| O2—C18 | 1.420 (3) | C12—H12 | 0.9400 |
| O3—C9 | 1.371 (3) | C13—C14 | 1.481 (4) |
| O3—C19 | 1.423 (4) | C13—H13 | 0.9400 |
| N1—C1 | 1.341 (3) | C14—C15 | 1.441 (4) |
| N1—C2 | 1.362 (3) | C14—H14 | 0.9900 |
| N1—H1N | 0.85 (3) | C15—C17 | 1.458 (5) |
| N2—C2 | 1.330 (3) | C15—C16 | 1.463 (5) |
| N2—C3 | 1.345 (3) | C15—H15 | 1.007 (18) |
| N3—C2 | 1.325 (3) | C16—C17 | 1.500 (6) |
| N3—H3A | 0.857 (17) | C16—H16A | 0.965 (19) |
| N3—H3B | 0.869 (17) | C16—H16B | 0.988 (19) |
| N4—C3 | 1.322 (3) | C17—H17A | 0.958 (19) |
| N4—H4A | 0.871 (17) | C17—H17B | 0.971 (19) |
| N4—H4B | 0.863 (17) | C18—H18A | 0.9700 |
| C1—C4 | 1.347 (3) | C18—H18B | 0.9700 |
| C1—H1 | 0.9400 | C18—H18C | 0.9700 |
| C3—C4 | 1.444 (3) | C19—H19A | 0.9700 |
| C4—C5 | 1.510 (3) | C19—H19B | 0.9700 |
| C5—C6 | 1.510 (3) | C19—H19C | 0.9700 |
| C5—H5A | 0.9800 | S1—O6 | 1.4442 (16) |
| C5—H5B | 0.9800 | S1—O5 | 1.4588 (17) |
| C6—C7 | 1.394 (3) | S1—O4 | 1.4658 (17) |
| C6—C11 | 1.395 (3) | S1—C20 | 1.763 (2) |
| C7—C8 | 1.390 (3) | C20—H20A | 0.9700 |
| C7—H7 | 0.9400 | C20—H20B | 0.9700 |
| C8—C9 | 1.400 (3) | C20—H20C | 0.9700 |
| C9—C10 | 1.375 (3) | ||
| C10—O1—C14 | 119.5 (2) | C12—C13—C14 | 122.0 (3) |
| C8—O2—C18 | 117.48 (19) | C12—C13—H13 | 119.0 |
| C9—O3—C19 | 115.4 (2) | C14—C13—H13 | 119.0 |
| C1—N1—C2 | 119.79 (18) | O1—C14—C15 | 109.1 (2) |
| C1—N1—H1N | 121.2 (18) | O1—C14—C13 | 112.5 (2) |
| C2—N1—H1N | 118.9 (18) | C15—C14—C13 | 118.4 (3) |
| C2—N2—C3 | 118.52 (18) | O1—C14—H14 | 105.2 |
| C2—N3—H3A | 119.3 (18) | C15—C14—H14 | 105.2 |
| C2—N3—H3B | 121.4 (19) | C13—C14—H14 | 105.2 |
| H3A—N3—H3B | 119 (3) | C14—C15—C17 | 123.6 (4) |
| C3—N4—H4A | 118.4 (19) | C14—C15—C16 | 124.3 (3) |
| C3—N4—H4B | 119.0 (18) | C17—C15—C16 | 61.8 (3) |
| H4A—N4—H4B | 122 (3) | C14—C15—H15 | 110 (2) |
| N1—C1—C4 | 122.8 (2) | C17—C15—H15 | 108 (2) |
| N1—C1—H1 | 118.6 | C16—C15—H15 | 120 (2) |
| C4—C1—H1 | 118.6 | C15—C16—C17 | 58.9 (3) |
| N3—C2—N2 | 120.8 (2) | C15—C16—H16A | 124 (3) |
| N3—C2—N1 | 117.59 (19) | C17—C16—H16A | 112 (3) |
| N2—C2—N1 | 121.6 (2) | C15—C16—H16B | 109 (3) |
| N4—C3—N2 | 117.50 (19) | C17—C16—H16B | 118 (3) |
| N4—C3—C4 | 120.4 (2) | H16A—C16—H16B | 120 (4) |
| N2—C3—C4 | 122.07 (19) | C15—C17—C16 | 59.3 (3) |
| C1—C4—C3 | 114.73 (19) | C15—C17—H17A | 120 (3) |
| C1—C4—C5 | 123.42 (19) | C16—C17—H17A | 120 (3) |
| C3—C4—C5 | 121.84 (18) | C15—C17—H17B | 110 (3) |
| C6—C5—C4 | 114.54 (18) | C16—C17—H17B | 120 (3) |
| C6—C5—H5A | 108.6 | H17A—C17—H17B | 114 (4) |
| C4—C5—H5A | 108.6 | O2—C18—H18A | 109.5 |
| C6—C5—H5B | 108.6 | O2—C18—H18B | 109.5 |
| C4—C5—H5B | 108.6 | H18A—C18—H18B | 109.5 |
| H5A—C5—H5B | 107.6 | O2—C18—H18C | 109.5 |
| C7—C6—C11 | 119.7 (2) | H18A—C18—H18C | 109.5 |
| C7—C6—C5 | 119.6 (2) | H18B—C18—H18C | 109.5 |
| C11—C6—C5 | 120.8 (2) | O3—C19—H19A | 109.5 |
| C8—C7—C6 | 121.3 (2) | O3—C19—H19B | 109.5 |
| C8—C7—H7 | 119.3 | H19A—C19—H19B | 109.5 |
| C6—C7—H7 | 119.3 | O3—C19—H19C | 109.5 |
| O2—C8—C7 | 125.0 (2) | H19A—C19—H19C | 109.5 |
| O2—C8—C9 | 115.5 (2) | H19B—C19—H19C | 109.5 |
| C7—C8—C9 | 119.5 (2) | O6—S1—O5 | 113.41 (11) |
| O3—C9—C10 | 121.8 (2) | O6—S1—O4 | 113.82 (11) |
| O3—C9—C8 | 119.0 (2) | O5—S1—O4 | 111.29 (10) |
| C10—C9—C8 | 119.0 (2) | O6—S1—C20 | 105.55 (11) |
| O1—C10—C9 | 116.1 (2) | O5—S1—C20 | 105.63 (12) |
| O1—C10—C11 | 121.4 (2) | O4—S1—C20 | 106.36 (11) |
| C9—C10—C11 | 122.4 (2) | S1—C20—H20A | 109.5 |
| C6—C11—C10 | 118.2 (2) | S1—C20—H20B | 109.5 |
| C6—C11—C12 | 125.0 (2) | H20A—C20—H20B | 109.5 |
| C10—C11—C12 | 116.7 (2) | S1—C20—H20C | 109.5 |
| C13—C12—C11 | 120.6 (3) | H20A—C20—H20C | 109.5 |
| C13—C12—H12 | 119.7 | H20B—C20—H20C | 109.5 |
| C11—C12—H12 | 119.7 | ||
| C2—N1—C1—C4 | 3.6 (3) | C7—C8—C9—C10 | −0.3 (3) |
| C3—N2—C2—N3 | −179.3 (2) | C14—O1—C10—C9 | 161.4 (2) |
| C3—N2—C2—N1 | 0.5 (3) | C14—O1—C10—C11 | −23.3 (4) |
| C1—N1—C2—N3 | 174.6 (2) | O3—C9—C10—O1 | 0.6 (3) |
| C1—N1—C2—N2 | −5.3 (3) | C8—C9—C10—O1 | 174.7 (2) |
| C2—N2—C3—N4 | −174.6 (2) | O3—C9—C10—C11 | −174.6 (2) |
| C2—N2—C3—C4 | 5.9 (3) | C8—C9—C10—C11 | −0.5 (4) |
| N1—C1—C4—C3 | 2.4 (3) | C7—C6—C11—C10 | −1.3 (3) |
| N1—C1—C4—C5 | −178.4 (2) | C5—C6—C11—C10 | 178.4 (2) |
| N4—C3—C4—C1 | 173.2 (2) | C7—C6—C11—C12 | −176.3 (2) |
| N2—C3—C4—C1 | −7.3 (3) | C5—C6—C11—C12 | 3.4 (4) |
| N4—C3—C4—C5 | −6.0 (3) | O1—C10—C11—C6 | −173.7 (2) |
| N2—C3—C4—C5 | 173.5 (2) | C9—C10—C11—C6 | 1.3 (4) |
| C1—C4—C5—C6 | 20.0 (3) | O1—C10—C11—C12 | 1.8 (4) |
| C3—C4—C5—C6 | −160.8 (2) | C9—C10—C11—C12 | 176.7 (2) |
| C4—C5—C6—C7 | −96.5 (3) | C6—C11—C12—C13 | −176.0 (3) |
| C4—C5—C6—C11 | 83.8 (3) | C10—C11—C12—C13 | 8.9 (4) |
| C11—C6—C7—C8 | 0.5 (3) | C11—C12—C13—C14 | 1.7 (5) |
| C5—C6—C7—C8 | −179.1 (2) | C10—O1—C14—C15 | 165.4 (3) |
| C18—O2—C8—C7 | −12.6 (3) | C10—O1—C14—C13 | 31.8 (4) |
| C18—O2—C8—C9 | 167.6 (2) | C12—C13—C14—O1 | −21.4 (4) |
| C6—C7—C8—O2 | −179.5 (2) | C12—C13—C14—C15 | −150.4 (3) |
| C6—C7—C8—C9 | 0.3 (3) | O1—C14—C15—C17 | 149.3 (4) |
| C19—O3—C9—C10 | −70.3 (3) | C13—C14—C15—C17 | −80.3 (5) |
| C19—O3—C9—C8 | 115.5 (3) | O1—C14—C15—C16 | 72.7 (5) |
| O2—C8—C9—O3 | −6.2 (3) | C13—C14—C15—C16 | −156.8 (4) |
| C7—C8—C9—O3 | 174.0 (2) | C14—C15—C16—C17 | 113.3 (4) |
| O2—C8—C9—C10 | 179.5 (2) | C14—C15—C17—C16 | −114.3 (4) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N···O4i | 0.85 (3) | 1.99 (3) | 2.827 (2) | 168 (3) |
| N3—H3A···O5i | 0.86 (2) | 2.06 (2) | 2.896 (3) | 166 (2) |
| N3—H3B···O5ii | 0.87 (2) | 2.15 (2) | 2.871 (3) | 140 (2) |
| N4—H4A···N2ii | 0.87 (2) | 2.27 (2) | 3.107 (3) | 163 (2) |
| N4—H4B···O6 | 0.86 (2) | 2.11 (2) | 2.948 (3) | 163 (2) |
Symmetry codes: (i) x−1, y+1, z; (ii) −x, −y+1, −z.
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989022011689/wm5666sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989022011689/wm5666Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989022011689/wm5666Isup3.cml
CCDC reference: 2224639
Additional supporting information: crystallographic information; 3D view; checkCIF report



