Table 1.
Number of cells remaining after several steps of quality control
| Start | Mt in % <20 | Min count >1,000 | Max count <150,000 | Genes/cell >500 | Doublets | |
|---|---|---|---|---|---|---|
| All samples | 34,695 | 21,402 | 20,757 | 20,491 | 19,952 | 19,440 |
| OB −CH | 10,829 | 5,409 | 5,259 | 5,198 | 5,014 | 4,885 |
| OB +CH | 7,022 | 4,189 | 4,189 | 4,146 | 3,872 | 3,787 |
| NZO −CH | 6,634 | 4,393 | 4,224 | 4,083 | 4,061 | 3,964 |
| NZO +CH | 10,210 | 7,411 | 7,085 | 7,064 | 7,005 | 6,804 |
Cells failing quality control were sequentially subtracted from the total number of cells before quality control (Start). Shown are the number of cells remaining after each step. Doublets, exclusion of cell doublets; Genes/cell, number of genes detected per cell; Mt in %, mitochondrial content in percent; Max count, maximum number of reads per cell; Min count, minimum number of reads per cell.