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Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Root-mean-square deviation (RMSD) of the MD simulation of HIV-1 gp120 monomer using GROMACS. A plot of RMSD in nanometers (nm) against time in nanoseconds (ns). The RMSD increased from 0 ns to 1 ns and fluctuated till 9 ns, after which it stabilized till the end of the simulation.