Abstract
Parvalbumin‐positive neurons (PVs) are the main class of inhibitory neurons in the mammalian central nervous system. By examining diurnal changes in synaptic and neuronal activity of PVs in the supragranular layer of the mouse primary visual cortex (V1), we found that both PV input and output are modulated in a time‐ and sleep‐dependent manner throughout the 24‐h day. We first show that PV‐evoked inhibition is stronger by the end of the light cycle (ZT12) relative to the end of the dark cycle (ZT0), which is in line with the lower inhibitory input of PV neurons at ZT12 than at ZT0. Interestingly, PV inhibitory and excitatory synaptic transmission slowly oscillate in opposite directions during the light/dark cycle. Although excitatory synapses are predominantly regulated by experience, inhibitory synapses are regulated by sleep, via acetylcholine activating M1 receptors. Consistent with synaptic regulation of PVs, we further show in vivo that spontaneous PV activity displays daily rhythm mainly determined by visual experience, which negatively correlates with the activity cycle of surrounding pyramidal neurons and the dorsal lateral geniculate nucleus‐evoked responses in V1. These findings underscore the physiological significance of PV's daily modulation.
Keywords: daily rhythm, neural activity, parvalbumin, sleep, synaptic transmission
Subject Categories: Neuroscience, Signal Transduction
Parvalbumin‐positive neurons of the mouse primary visual cortex are found to be rhythmically regulated in a time‐ and sleep‐dependent manner during the circadian light/dark cycle, mediated by acetylcholine activation of M1 receptors.
Introduction
Parvalbumin (PV)‐expressing GABA (ɣ‐aminobutyric acid)‐ergic neurons are the most abundant class of inhibitory neurons in the neocortex (Rudy et al, 2011). By forming dense inhibitory connections around soma or the axon initial segment of their neighboring neurons, mainly glutamatergic principal neurons, these fast‐spiking inhibitory neurons gate the excitability of their targets and play critical roles in maintaining the stability as well as enhancing the computational power and precision of the neural network (Hu et al, 2014; Ferguson & Cardin, 2020; Sadeh & Clopath, 2021). For example, in the primary visual cortex (V1), PV neurons are known to control cortical plasticity (Sur et al, 2013; van Versendaal & Levelt, 2016) and visual response properties such as response gain (Atallah Bassam et al, 2012; Wilson et al, 2012; Zhu et al, 2015). Furthermore, dysregulation of PV neurons is tightly associated with a variety of brain disorders, such as epilepsy (Wang et al, 2017), autism (Vogt et al, 2018), schizophrenia (Steullet et al, 2017), and Alzheimer's disease (AD; Hijazi et al, 2019). Thus, defining the functional regulation of PV neurons will provide important insight into their roles in normal and diseased brains.
Despite their functional importance, how PV neurons are modulated remains poorly understood. Most studies have focused on the impacts of disease‐associated genetic mutations on early development of PV neurons (Marin, 2012; Hu et al, 2017), which provides insight into the cause of defects in these diseases. But for other psychiatric and neurodegenerative disorders, very little is known about how dysregulation of PV neurons might occur. Recent studies showed that early‐life sleep may regulate the neurodevelopment of cortical PV neurons (Jones et al, 2019). In mature brain, different sleep/wake stages and sleep history are reported to acutely affect the spontaneous firing of both excitatory and inhibitory neurons (Vyazovskiy et al, 2009; Miyawaki & Diba, 2016) including PV neurons (Niethard et al, 2016), although contradictory results exist (Hengen et al, 2013, 2016). These findings suggest sleep may be crucial for PV neurons' regulation. We previously reported that the excitation/inhibition (E/I) ratio of cortical pyramidal neurons naturally changes during the 24‐h day, of which the synaptic inhibition oscillates dramatically and is influenced by sleep (Bridi et al, 2020). Taken together, we hypothesized that cortical PV neurons might be dynamically modulated daily. Whether and how this happens and what physiological effects it may have are questions of importance that might shed light on the functional regulation of PV neurons.
We studied the above questions in V1 by combining ex vivo and in vivo assessments. We first observed that the inhibitory output from PV neurons indeed dramatically differs between the light and dark cycle. Consistently, we found that PV's excitatory and inhibitory synaptic transmission slowly oscillates in the opposite direction during the 24‐h day. In addition to the time dependency, we found that experience dominates the regulation of PV's synaptic excitation while sleep plays an essential role in regulating PV's synaptic inhibition. We further identified acetylcholine (ACh) via targeting presynaptic M1R is required for the daily regulation of PV's synaptic inhibition. In line with all the ex vivo changes, we observed a daily oscillation in PV's spontaneous activity in vivo strongly dependent on visual experience. At last, we found that the activity of putative pyramidal neurons in V1 oscillates in the opposite direction as PV neurons. Furthermore, we demonstrated that direct dorsal lateral geniculate nucleus (dLGN) stimulation evoked neuronal activities in V1, which mimics vision‐evoked responses, are stronger at ZT0 compared to ZT12. This pattern is consistent with PV's role in gain control, further strengthening the physiological importance of this novel mode of daily modulation of PV neurons.
Results
Altered PV‐evoked inhibition onto pyramidal neurons between the light and dark cycle
We previously found that the inhibitory synaptic transmission of V1 L2/3 pyramidal neurons slowly increases and remains high during the light cycle and gradually reduces and remains low during the dark cycle (Bridi et al, 2020). Therefore, we hypothesized that altered inhibitory output from PV neurons contribute to this phenomenon. Using PV:Ai32 transgenic mice expressing channelrhodopsin‐2 (ChR2) specifically in PV neurons, we directly recorded light‐evoked inhibitory postsynaptic currents (LEIPSCs) in V1 L2/3 pyramidal neurons at the end of the light cycle (Zeitgeber time 12, ZT12) and the end of dark cycle (ZT0; Fig 1A and Appendix Fig S1A, see Materials and Methods). In V1‐containing acute brain slices, we sub‐divided a cubic area of 0.45 mm2 covering L1 to L5 of V1 into 15 by 15 grids (Fig 1A 3). The soma position of the recorded pyramidal neurons was relatively fixed. Each grid was sequentially stimulated with brief blue light pulse in a pseudorandom order and pharmacologically isolated, light‐evoked inhibitory postsynaptic currents (LEIPSCs) were recorded from L2/3 pyramidal neurons by voltage clamped at −50 mV. We only analyzed LEIPSCs with short latency, high fidelity and maximal amplitude larger than 60 pA (see Materials and Methods). We used the maximal amplitude of the LEIPSCs as pixel value for corresponding grid and plotted a two‐dimensional map for each pyramidal neuron (Fig 1A 5, see Materials and Methods). We first compared the IPSC strength by aligning all maps from each group according to the soma position of the recorded neuron. The averaged soma‐aligned map of ZT12 shows higher signal intensity than ZT0 (Fig 1B). LEIPSCs at ZT12 were significantly larger (both max amplitude and summation of all currents) compared to those at ZT0 (Fig 1C and D). The difference between ZT0 and ZT12 was unlikely caused by variant levels of ChR2 since we randomly recorded PV:Ai32 mice from the same litter at ZT0 or ZT12, and the differences were highly conserved among all litters (Appendix Fig S1B). These results support our hypothesis that the functional output from cortical PV neurons varies at different times of the day—high at ZT12 while low at ZT0.
To further investigate whether the spatial distribution of PV‐evoked inhibition was also altered between ZT0 and ZT12, we projected each map onto the reference map (Fig 1A 3) after pia alignment (pia‐align, see Materials and Methods). The averaged pia‐aligned maps of both groups show that the LEIPSCs were mainly evoked within L2/3 with similar lateral distribution between groups (Fig 1E). In the vertical direction, a significant proportion of IPSCs was also evoked from L4, but relatively weak from L5, and the distribution seems to be flattened at ZT12 (Fig 1E). While pyramidal neurons recorded in both groups had similar spatial distribution (Appendix Fig S1C and D), their input size was significantly larger at ZT12 than at ZT0 (Fig 1F), suggesting PV neurons from broader area might be recruited at ZT12. Thus, these results in combine suggest that PV's output indeed alters markedly at different times of the day.
Opposite oscillation of excitatory and inhibitory synaptic transmission of PV neurons during the light/dark cycle
Changes in PV and pyramidal neuron's intrinsic excitability or presynaptic properties unlikely contribute to the altered PV‐evoked output since both of them are found to be unchanged between the light and dark cycle (Bridi et al, 2020). Inhibition is known to gate neuronal output (Gidon & Segev, 2012; Jelitai et al, 2016), we therefore examined whether PV neurons received different inhibition between ZT0 and ZT12. We recorded miniature inhibitory postsynaptic currents (mIPSCs) of V1 L2/3 PV neurons from acute brain slices harvested at either ZT0 or ZT12. Indeed, mIPSC frequency was significantly reduced at ZT12 compared to ZT0 (Fig 2B) with unaltered amplitude (Fig 2D). These results indicate that PV neurons are less suppressed at ZT12, which might underlie the greater PV‐evoked inhibitory output. We previously found that the synaptic excitation and inhibition of cortical pyramidal neurons are modulated daily (Bridi et al, 2020). We therefore wondered whether the excitation of PV neurons is also modulated during the light/dark cycle. Interestingly, mEPSC frequency but not amplitude was higher at ZT12 than at ZT0 (Fig 2A and C), suggesting that PV neurons receive more excitatory inputs by the end of the light cycle.
To further evaluate the temporal profile of PV's synaptic transmission, we recorded PV's spontaneous EPSCs and IPSCs that are more physiologically relevant (Jurgensen & Castillo, 2015) at multiple time points during the light/dark cycle (Fig 3A). Similar to miniature currents, both sEPSCs and sIPSCs changed but in the opposite direction. Specifically, sEPSCs and sIPSCs were increased and decreased respectively 4 h after entering the light cycle, then they were maintained relatively stable between ZT4 and ZT12. Similar changes but in the opposite direction occurred after switching into the dark cycle, resulting in clear rhythmic oscillations during the 24‐h day (Fig 3B and C). Thus, PV's synaptic excitation and inhibition are modulated in a time‐dependent manner during the light/dark cycle.
Experience‐ and sleep‐dependent regulation of synaptic transmission of PV neurons
We next sought to understand what may drive the opposite changes in PV's excitation and inhibition. Neurons including GABAergic inhibitory neurons in V1 L2/3 are strongly recruited and tuned by direct visual experience (Liu et al, 2009; Kerlin et al, 2010). Therefore, visual experience during the light cycle might be involved. To directly test the role of experience, we visually deprived a group of PV:Ai9 mice by dark exposure during the last light cycle prior to experimentation (Dark‐ZT12, Fig 3D). Such brief dark exposure barely affects the activity pattern of mice (Faradji‐Prevautel et al, 1990) but completely abolished the upregulation of sEPSCs (Fig 3E), suggesting that experience plays an important role in regulating the excitatory input onto PV neurons. This sort of regulation was not limited to the primary visual cortex. In primary motor cortex (M1), PV neurons showed higher excitatory synaptic transmission by the end of the dark cycle (Appendix Fig S2B), during which mice are more active, further supporting the experience dependency. In striking contrast, we found that the downregulation of IPSC during the light cycle was independent of visual input (Fig 3F), indicative of distinct regulatory mechanisms for PV's synaptic excitation and inhibition during the light/dark cycle. Sleep has been shown to regulate both excitation and inhibition of pyramidal neurons (Liu et al, 2010; Bridi et al, 2020). Therefore, we next studied how acute sleep deprivation (SD) at the beginning of the light cycle may affect PV's synaptic transmissions (Fig 3G), during which mice spend around 70% of time sleeping (Appendix Fig S2C). SD was achieved by gentle handling that caused variable but not significant change in plasma corticosterone level (Appendix Fig S2F), whose efficacy was confirmed by electroencephalogram (EEG) and electromyogram (EMG) recordings (Appendix Fig S2E). SD abolished the reduction in sIPSCs (Fig 3I), indicating that sleep is required for the downregulation of synaptic inhibition during the early light cycle. Interestingly, SD failed to prevent the increase, and actually further enhanced sEPSCs (Fig 3H), which is likely due to an additional increase in visual experience indirectly caused by SD. Indeed, this increment was largely abolished by SD in darkness (Appendix Fig S2G), confirming the dominant role of experience in regulating excitatory synapses onto PV neurons. Thus, synaptic excitation and inhibition of PV neurons are mainly regulated by experience and sleep during the day, respectively.
ACh regulates properties of inhibitory synapses onto PV neurons via M1R
Having established that, in contrast to excitation, PV's inhibition is modulated in a time‐ and sleep‐dependent manners, we sought to define the mechanism underlying this process. Changes in mIPSC frequency are usually attributed to either altered presynaptic function or synapse number (Han & Stevens, 2009). By examining GAD65‐positive presynaptic puncta around the soma of PV neurons (Appendix Fig S3A), we found no change in perisomatic inhibitory synaptic density between ZT0 and ZT12 (Appendix Fig S3B1), but we did see a decrease in puncta size at ZT12 (Appendix Fig S3B2). Positive correlation between presynaptic size and presynaptic function has been reported (Murthy et al, 2001). Therefore, our structural results imply that the inhibitory presynaptic function of PV neurons may be rhythmically modulated.
Several neuromodulators including ACh and norepinephrine (NE) have been shown to directly regulate presynaptic properties of different cell types in various brain regions (Kruglikov & Rudy, 2008; Choy et al, 2018). Cortical levels of these neuromodulators oscillate during the 24‐h day that correlate with the sleep/wake cycle—high during wake cycle and low during sleep cycle (Kametani & Kawamura, 1991; Jiménez‐Capdeville & Dykes, 1993), and they are proposed to be the key mediators of circadian rhythm (Frank & Cantera, 2014) and sleep (Tononi & Cirelli, 2014) in regulating synaptic plasticity. To test whether ACh and NE are required for the daily regulation of PV's inhibitory synaptic transmission (Fig 4A), we first tested the effect of cholinergic and noradrenergic agonists on mIPSCs at ZT12, when mIPSC frequency was low (Fig 2B). Whereas treatment with NE was effectless (Appendix Fig S3C), incubation with carbachol (CARB), a non‐selective ACh receptor agonist, significantly increased mIPSC frequency (Fig 4B) without changing the amplitude (Fig 4C). This effect was limited to cells recorded at ZT12 but not at ZT0 (Fig 4D and E), indicating that the cholinergic receptors are already activated at ZT0. Interestingly, the effect of ACh seems to be cell type‐specific since mIPSCs of pyramidal neurons were insensitive to CARB treatment (Appendix Fig S3H). These results suggest that ACh plays a unique role in the daily regulation of PV's inhibition. To investigate the downstream effector of ACh, we acutely infused brain slices with either muscarinic or nicotinic ACh receptor antagonists after establishing a baseline mIPSC recording at ZT0. Infusion with 50 μM non‐selective mAChRs antagonist atropine (Atr) but not nAChRs antagonist mecamylamine (MEC; Appendix Fig S3F) was sufficient to reduce mIPSC frequency (Fig 4F), which could be rapidly reversed by washing out the drug (Appendix Fig S3E1). Together, these results suggest that the increase in PV's inhibition by the end of the dark cycle requires mAChRs activation. We further defined the subtype of mAChRs by testing antagonists selective for M1R (pirenzepine, Pir) and M3R (1,1‐dimethyl‐4‐diphenylacetoxypiperidinium iodide, 4‐DAMP). Pir showed a quick and reversible effect on mIPSC frequency (Fig 4H) similar to Atr but 4‐DAMP had no effect (Appendix Fig S3G), suggesting a selective role for M1R. We confirmed these findings by demonstrating that co‐incubation with Pir blocked the CARB‐induced elevation in mIPSC frequency at ZT12 (Fig 4J). None of these drug treatments affected mIPSC amplitude (Fig 4G, I and K and Appendix Fig S3C2–G2), further supporting the presynaptic locus for this form of modulation.
How does activation of M1R by ACh alter presynaptic properties? KCNQ potassium channels are downstream targets of M1R activation that influence the membrane potential (Wang & Li, 2016; Appendix Fig S4A) and regulate synaptic release of multiple neurotransmitters including GABA (Martire et al, 2004). By testing the effects of KCNQ2/3 channel opener retigabine (PAM; Martire et al, 2004; Appendix Fig S4B and C) and blocker XE991 (Appendix Fig S4D and E) on PV's mIPSCs, we found that KCNQ channels are indeed involved in the bidirectional regulation of PV's inhibition. Furthermore, co‐application of XE991 with M1R antagonist Pir completely abolished the Pir‐induced reduction in mIPSC frequency recorded at ZT0 (Appendix Fig S4F), indicating that KCNQ channels are critical downstream mediators of M1R activation in regulating PV's inhibition. In summary, we have found that ACh is involved in the daily regulation of PV's inhibitory synaptic transmission via targeting M1R, which then recruit KCNQ channels. This signaling pathway may serve as one important mechanism underlying the daily modulation of PV's neuronal function.
Spontaneous activity of V1 L2/3 PV neurons oscillates naturally during the light/dark cycle in an experience‐dependent manner
The balance between synaptic excitation (E) and inhibition (I) could dictate somatic firing (Liu, 2004; Gidon & Segev, 2012). The bidirectional oscillation in PV's E and I implies that PV neurons in vivo may have varied spontaneous activity at different times of the day. To test this hypothesis, we first performed in vivo two‐photon calcium imaging to compare PV's spontaneous Ca2+ activity at ZT0 and ZT12 (Fig 5A, Materials and Methods). The same group of L2/3 PV neurons in V1 was identified (Appendix Fig S5A) and we verified intermittent imaging would not disturb mice's regular activity cycle (Appendix Fig S5B). To avoid visual evoked response and eliminate the effect of arousal state on neural activity, imaging was conducted in dark with sufficient habituation while mice remained quietly awake and free‐running in an air‐suspended arena (Fig 5A 3). We found that majority of PV neurons had higher spontaneous activity and more events at ZT12 compared to ZT0 (Fig 5B). The mean activity of all PV neurons (indicated by sum(ΔF/F 0), see Materials and Methods) was significantly larger with right‐tilted cumulative distribution at ZT12 (Fig 5C). To further evaluate the detailed temporal profile of PV's spontaneous activity, we repetitively imaged mice four times in shuffled order at ZT0, 6, 12, and 18 with 36‐h interval (Fig 5D). Consistent with the oscillatory patterns of sEPSCs and sIPSCs, most PV neurons had higher activity at ZT6 and/or 12 while reduced activity at ZT0 and/or 18 (Appendix Fig S5C), leading to an apparent oscillation of the mean activity across the 24‐h day (Fig 5D). These distinct activity patterns are unlikely due to the relatively higher locomotor activity at ZT0 (Appendix Fig S6C) since no cross‐correlation between neural activity and locomotion was found at either time point (Appendix Fig S6D). This is consistent with previous studies showing that the spontaneous activities of cortical PV neurons are either heterogeneously affected (Fu et al, 2014) or minimally affected especially for PV neurons localized in superficial cortical layers (Dipoppa et al, 2018) by locomotion. Hence, our in vivo findings support our hypothesis that the spontaneous activity of V1 PV neurons is naturally fluctuating during the day.
PV's synaptic excitation and inhibition are mainly regulated by experience and sleep, respectively, during the day. We next sought to investigate whether the daily oscillation of PV's spontaneous activity is influenced in similar ways (Fig 6A). 4 h of SD between ZT0 and ZT4 promoted activities of majority of the PV neurons (Fig 6B and C), which was largely prevented if sleep depriving in complete darkness (Fig 6D and E). These patterns assemble those of PV's sEPSCs (Fig 3H and Appendix Fig S2G), suggesting alike underlying mechanism. To summarize, experience plays a dominant role in modulating PV's excitatory input and spontaneous activity.
Daily modulation of PV neuronal function negatively correlates with activity cycle of pyramidal neurons and the altered dLGN‐evoked responses in V1
In line with PV's higher activity (Fig 5) and greater inhibitory output (Fig 1) at ZT12 compared to ZT0, neighboring putative pyramidal neurons estimated by their Ca2+ response skewness (Dipoppa et al, 2018; Appendix Fig S6A) showed opposite change in activity as PV neurons (Fig 7A and B). Moreover, pyramidal cells displayed oscillatory activity during the 24‐h day in the opposite direction as PV neurons (Fig 7C and Appendix Fig S6E), further supporting the physiological impact of PV's daily modulation.
PV neurons are key players regulating visual response gain. The high and low spontaneous activity of PV neurons that we observed during light and dark cycles, respectively, may be sufficient to alter the response gain. To test this possibility, we compared V1 responses evoked by stimulating dLGN at ZT0 and ZT12 from the same animals (Fig 7D 1). We expressed ChR2‐mCherry in dLGN neurons and GCaMP6s in V1 L2/3 neurons. An optic fiber was implanted laterally to deliver light stimulation over the dLGN neurons (Fig 7D 2). 2–3 weeks after surgery, mice were habituated and repetitively imaged in complete darkness using two‐photon microscopy under head‐fixation at ZT0 and ZT12. We verified that our light stimulation could not induce visual‐evoked responses (Appendix Fig S7A and B). Then we stimulated dLGN 15 times at 0.1 Hz and recorded evoked Ca2+ responses from the same population of neurons at both time points (Fig 7D 3, see Materials and Methods). Not all neurons within the field of views (FOVs) had dLGN‐evoked responses, but those showing responses at either or both time points were counted as the responsive cells and their percentages were calculated for each mouse. The dLGN‐responsive cells are mostly putative pyramidal neurons. No PV neuron was found to be responsive likely due to the small sample size or limited dLGN inputs were recruited. As expected, mice had a higher percentage of responsive cells when imaged at ZT0 compared to ZT12 (Fig 7G). The response fidelity of responsive cells, calculated as the proportion of evoked responses out of the 15 dLGN stimulations, was significantly higher at ZT0 than at ZT12 (Fig 7H). Finally, we compared the amplitude of the dLGN‐evoked responses at both time points for each responsive cell and found larger responses at ZT0 than at ZT12 (Fig 7E, F and I), which were inversely correlated with the spontaneous activity of local PV neurons (Appendix Fig S7C–F). Together, these results confirm that superficial neurons in V1 have greater dLGN‐evoked responses at ZT0 than at ZT12, which is consistent with weaker PV activity during the dark and stronger activity during the light cycle. Thus, our data suggest that the daily modulation of PV neuronal function might be sufficient to impact the response gain in the visual cortex.
Discussion
Proper function of PV neurons is critical for maintaining cognitive performance and highly relevant to a variety of brain disorders. Here we report that PV neurons in V1 are subjected to tight modulation during the natural light/dark cycle in a time‐ and sleep‐dependent manners. ACh and its downstream M1R are critically involved in mediating this regulation. Changes in PV's activity in vivo negatively correlate with the activity pattern of surrounding pyramidal neurons and dLGN‐evoked responses in V1, supporting the physiological significance of such daily modulation. Therefore, our study unveils a novel regulatory mechanism for PV neurons, provides implications on how daily rhythm, and sleep might modulate the brain function.
The inhibitory connections between PV and pyramidal neurons in cortices are known to be developmentally regulated in an experience‐dependent manner (Jiang et al, 2005). However, in mature brain, inhibitory synapses become more stable and are resistant to experience deprivation (Gao et al, 2017). The lack of cortical iLTD in adult brain (Huang et al, 2010) suggests that these synapses are strongly anchored. Surprisingly, we found that the efficiency of the inhibitory connection between PV and pyramidal neurons dramatically differs between the light and dark cycle, consistent with our previous findings showing the upregulation and downregulation of mIPSC frequency of cortical pyramidal neurons (Bridi et al, 2020). These results imply that inhibitory synapses in adult brain are not as rigid as previously thought, but instead are flexibly modulated during the 24‐h day. The exact mechanism underlying this daily modulation remains to be examined. One possibility is that the lower inhibition at ZT12 might enhance PV's output by reducing the activation threshold of PV neurons.
The bidirectional changes in PV's excitatory and inhibitory synaptic transmission show strong time dependency. Both of them rapidly transit from high to low or vice versa after entering the next cycle, and then they remain relatively stable throughout the rest of the cycle regardless of similar sleep/wake activity (Fig 3B and C), suggesting a time‐dependent regulation. Circadian rhythm has long been proposed to regulate synaptic efficacy, especially the excitatory synapses of excitatory neurons (Frank & Cantera, 2014). We previously found that the inhibitory synaptic strength of cortical pyramidal neurons also shows rhythmicity (Bridi et al, 2020). Hence, inhibitory synaptic efficacy of both excitatory and inhibitory neurons is likely under circadian modulation as excitatory synapses. In addition to circadian rhythm, much evidence supports the role of sleep in regulating excitatory synaptic plasticity (Tononi & Cirelli, 2020). Indeed, we found that sleep directly regulates the transition of PV's inhibitory synaptic transmission during the early light cycle. Interestingly, the gradually decreased sIPSCs during the light cycle temporally coincides with the reduction in slow wave activity (SWA; Appendix Fig S2H and I), which is widely used to measure the sleep pressure (Huber et al, 2000), further implying a connection between sleep and PV's synaptic modulation. Therefore, the daily modulation of PV's synaptic transmission is dependent on both time and sleep. We further identified that ACh via M1R activation is critical signal mediating the bidirectional modulation of PV's inhibitory synaptic efficacy. Interestingly, the working dynamic of the same cholinergic signaling seems to be different for upregulation and downregulation of PV's mIPSCs. High mIPSCs at ZT0 can be rapidly reduced by blocking the ACh‐M1R signal (Fig 4F and H), while low mIPSCs at ZT12 requires prolonged activation of this pathway (Fig 4B and Appendix Fig S3D). This distinction suggests that chronic high level of cortical ACh is critical for maintaining the inhibitory synaptic efficacy onto PV neurons during the dark cycle. However, when cholinergic tone is low during the late light cycle, these inhibitory synapses are more resistant to abrupt increases in ACh induced by interspersed wake and rapid eye movement (REM) sleep episodes (Marrosu et al, 1995; Ma et al, 2020). Neuromodulators are candidates mediating both the sleep‐ and time‐dependent synaptic regulation (Frank & Cantera, 2014; Tononi & Cirelli, 2014). The circadian rhythm of cortical ACh level (Kametani & Kawamura, 1991; Jiménez‐Capdeville & Dykes, 1993) well correlates with the daily modulation of PV's inhibitory synapses, which can account for both its sleep and time dependency. Thus, our results provide evidence supporting the active role of ACh in the daily regulation of the inhibitory synapses specifically onto PV neurons.
It is surprising to find that the ACh‐dependent regulation of mIPSCs is unique for PV but not pyramidal neurons in V1 L2/3 (Appendix Fig S3H) even though they receive inhibition from overlapping resources (Harris & Mrsic‐Flogel, 2013). This might be due to the unique enrichment of M1Rs at presynaptic terminals targeting PV neurons. The diversity of subtypes and subcellular distribution of neuromodulator receptors have long been known (Dembrow & Johnston, 2014; Palomero‐Gallagher & Zilles, 2019). For example, it has been shown that nAChR activation selectively potentiates the thalamocortical but not the intracortical synapses of L3 pyramidal neurons in the primary somatosensory cortex (Gil et al, 1997). A recent study reported that the neuron‐derived neurotrophic factor (NDNF)‐expressing interneurons in V1 L1 specifically target supragranular PV neurons (Cohen‐Kashi Malina et al, 2021), which could be another explanation for the selectivity of ACh. On the other hand, we have not examined other neuromodulators such as serotonin and histamine, both of which have dense innervation in the visual cortex and also show rhythmic brain levels (Kosofsky et al, 1984; Manning et al, 1996). Their potential contribution cannot be excluded, although our results do suggest manipulating cholinergic signaling alone is sufficient to bidirectionally alter PV's mIPSCs.
In V1, PV's opposite oscillations in E and I temporally coincide with their spontaneous activity in vivo, which is congruent with the role of E/I ratio in controlling somatic firing (Gidon & Segev, 2012). Indeed, PV's activity was greatly modified by SD via directly altering visual experience similar as their excitatory inputs. Therefore, PV's spontaneous activity likely shares similar time‐ and sleep‐dependent regulation during the day and the circadian rhythm of the cholinergic signaling may also be involved. Although this hypothesis remains to be tested, it provides one explanation to reconcile the discrepancy regarding the role of acute sleep stages and/or sleep history in modulating neuronal firing (Vyazovskiy et al, 2009; Grosmark et al, 2012; Hengen et al, 2013; Mizuseki & Buzsaki, 2013; Miyawaki & Diba, 2016; Niethard et al, 2016; Watson et al, 2016). When studies are conducted during the early light cycle, sleep and sleep history indeed alter neuronal firing (Vyazovskiy et al, 2009; Grosmark et al, 2012; Miyawaki & Diba, 2016; Niethard et al, 2016; Watson et al, 2016), probably due the sleep‐dependent changes in cortical levels of ACh as well as other neuromodulators (Hasselmo, 1999; Nadim & Bucher, 2014; Bridi et al, 2020), and neuronal properties such as synaptic efficacy have not yet reached steady state. For others examining neuronal firing during the late light cycle when the tone of most neuromodulators remains low and the neuronal properties are already stable, switching between sleep stages or even sleep history may not be sufficient to cause changes (Hengen et al, 2013; Mizuseki & Buzsaki, 2013). All these studies suggest that sleep and time may interact dynamically, resulting in complex regulation of neural activity that will demand more in‐depth investigation to disentangle the underlying mechanisms.
Our results suggest different mean activity between the light and dark cycle for PV and putative pyramidal neurons, which seems to be contradictory to previous findings showing similar mean firing rate of regular spiking neurons between the cycles (Hengen et al, 2016). This might be due to sampling bias. While we only studied neurons in supragranular layers at static timepoints, their multiunit recording usually targeted neurons in deeper cortical layers over long period of time. It is necessary to point out that the mean activity of non‐PV non‐putative pyramidal neurons are not different between ZT0 and ZT12 (Appendix Fig S6F and G), further suggesting cell type‐specific dynamic of neural activity. In addition, we have only shown time‐dependent changes in neural activity when mice were quietly awake, which may partially reflect the effect of sleep history but not acute sleep stages. PV neurons in somatosensory cortex are found to fire at higher rate at wake and REM sleep compared to NREM sleep during the early light cycle (Niethard et al, 2016). Opposite findings are recently reported (Brecier et al, 2022). How PV neurons in V1 are modulated by acute sleep stages and how PV neurons in other cortical regions are modulated daily remains to be examined.
PV neurons play a critical role in gain control. Their daily oscillation in neural activity may cause the neural network where they reside in to respond differentially to their inputs (Ferguson & Cardin, 2020), which may underlie the daily fluctuation in cognitive performance (Muto et al, 2016). Studies in the visual cortex have provided solid evidence to show that PV's activity determines the gain of visual response (Wilson et al, 2012; Zhu et al, 2015). Although the magnitude of PV oscillation is not as great as the optogenetic manipulation used previously (Atallah Bassam et al, 2012), they may be sufficient to alter the response gain in V1. Indeed, the dLGN‐evoked responses in V1 are significantly different between ZT0 and ZT12 following the gain rule of PV neurons, strongly suggesting that the daily modulation of PV neuronal function is physiologically important. It is worthy of notice that PV's impact on both spontaneous and evoked activity in V1 seems to be restricted to the normal physiological conditions. Both activity of pyramidal neurons and dLGN‐evoked responses were elevated after 4 h of SD (Appendix Fig S8) when PV's activity was also increased (Fig 6B and C). These results suggest that under disturbed conditions such as SD, modulation of neural activity as well as dLGN‐V1 connection may utilize complex mechanisms in addition to PV's inhibition. For example, SD may directly facilitate dLGN‐V1 synapses by recruiting neuromodulatory signal (Kuo & Dringenberg, 2008) such as histamine (Soya et al, 2008).
In the visual circuit, light sensitivity of retina has long been known to show circadian rhythm (Bassi & Powers, 1986) and arousal state influences the retina output (Schroder et al, 2020). Here we directly activated dLGN neurons to mimic visual input; therefore, we could exclude the potential contribution of retina to the alternating V1 responses. Recently, dLGN neural activity is found to be rhythmically regulated (Chrobok et al, 2021). It remains to be evaluated whether the rhythmic change in dLGN activity may also affect V1 responses at different times of the day. Other consequences of PV's daily modulation remain to be investigated. Some recent studies reported that both layer 5 cortical pyramidal neurons (Krone et al, 2021) and somatostatin neurons in prefrontal cortex (preprint: Tossell et al, 2020) are directly involved in sleep regulation. It will be interesting to examine whether PV's daily changes may also have regulatory role for sleep via unknown circuitries.
Additionally, our findings also provide some mechanistic implications for neuronal dysfunction in brain diseases such as AD. Impaired PV neuronal function is considered a key abnormality in AD brains (Verret et al, 2012; Cattaud et al, 2018), which is linked to reduced gamma oscillation and impaired cognitive performance (Verret et al, 2012; Palop & Mucke, 2016). Meanwhile, disturbed sleep and circadian rhythm and impaired cholinergic function are commonly observed in AD patients, which could be initiated decades before the diagnosis and are recognized as risk factors for AD (Falgas et al, 2021). Here by showing how synaptic and neuronal properties of PV neurons are diurnally regulated, we provide new direction to investigate how AD‐associated PV's dysregulation might be triggered.
Materials and Methods
Animals
All experimental procedures were approved by the Institutional Animal Care and Use Committees at the Interdisciplinary Research Center on Biology and Chemistry, Chinese Academy of Science. Homozygous PV‐ires‐cre mice (B6;129P2‐Pvalb tm1(cre)Arbr /J, PV:cre, Jax Laboratory) were used in this study. They were either crossed with Ai9 mice (B6.Cg‐Gt(ROSA)26Sor tm9(CAG‐tdTomato)Hze /J, Jax Laboratory) to genetically label PV neurons with tdTomato (PV:Ai9), or with Ai32 mice (B6;129S‐Gt(ROSA)26Sor tm32(CAG‐COP4*H134R/EYFP)Hze /J, Jax Laboratory) to express channelrhodopsin‐2 (ChR2) and EYPF specifically in PV neurons (PV:Ai32). 5‐ to 10‐week‐old male mice were used only. All mice were housed with a 12 h:12 h light/dark cycle with ad libitum access to food and water. Mice with shifted light/dark cycle were entrained in customized entrainment chamber for at least 2 weeks before experiments. The light‐on time (ZT0) was adjusted according to the experiment.
Acute brain slices preparation
300 μm thickness acute coronal brain slices containing the primary visual cortex or motor cortex were prepared as described previously. Briefly, mice were anesthetized with isoflurane vapor and rapidly sacrificed within 2 h before the light on (ZT0) or light off (ZT12). Slices were cut in ice‐cold dissection buffer containing the following: 212.7 mM sucrose, 5 mM KCl, 1.25 mM NaH2PO4, 10 mM MgCl2, 0.5 mM CaCl2, 26 mM NaHCO3, and 10 mM dextrose, bubbled with 95% O2/5% CO2. Slices were transferred and incubated at 30°C for 30 min with artificial cerebrospinal fluid (ACSF) containing 119 mM NaCl, 5 mM KCl, 1.25 mM NaH2PO4, 1 mM MgCl2, 2 mM CaCl2, 26 mM NaHCO3, and 10 mM dextrose, saturated with 95% O2 and 5% CO2. After that, slices were maintained at room temperature (RT) for at least 30 min before recording.
Whole‐cell recording
Whole‐cell recordings were made from the tdTomato‐expressed PV neurons in layer 2/3 of V1 or M1. Slices were submerged in the recording chamber perfused with 30 ± 0.5°C perfusion buffer at 2 ml/min. Cells were visualized by an upright fluorescence microscope (Olympus XT640‐W). Borosilicate glass pipette recording electrodes with 3–5 MΩ resistance were filled with different internal solutions according to the experiment, all of which were adjusted to pH 7.3–7.4, 285–300 mOsm. Data were filtered at 2 kHz and digitized at 10 kHz using Digidata 1550A (Molecular Devices, CA, USA). Only cells with input resistant Ri ≥ 100 MΩ and access resistance Ra ≤ 25 MΩ were used for analysis. In addition, cells were discarded if Ri and Ra changed more than 25% during the recording.
Miniature postsynaptic current recordings
For mEPSC recordings, 1 μM TTX, 100 μM DL‐APV and 20 μM gabazine were added to the ACSF to isolate AMPAR‐mediated mEPSCs. The internal solution contained 8 mM KCl, 125 mM cesium gluconate, 10 mM HEPES, 1 mM EGTA, 4 mM MgATP, 0.5 mM NaGTP, 10 mM Na‐phosphocreatine, and 5 mM QX‐314. Cells were held at −80 mV.
For mIPSC recordings, 1 μM TTX, 100 μM DL‐APV, and 20 μM CNQX were added into the bath. The internal solution contained 8 mM NaCl, 120 mM cesium chloride, 10 mM HEPES, 2 mM EGTA, 4 mM MgATP, 0.5 mM NaGTP, and 10 mM QX‐314. Cells were held at −80 mV for experiments in Fig 2 and −60 mV for those in Fig 4 and Appendix Figs S3 and S4.
Spontaneous postsynaptic current recordings
Spontaneous EPSCs were recorded in regular ACSF without any blocker. Cells were held at −55 mV, the measured reversal potential of the inhibitory current (Appendix Fig S2A). To record spontaneous IPSCs, ACSF containing 100 μM DL‐APV and 20 μM CNQX was used and cells were held at −60 mV during the recording. Internal solution for sEPSC and sIPSC was similar to those used for mEPSC and mIPSC except no QX‐314 was added.
ChR2‐assisted mapping of the connectivity between PV and pyramidal neurons
Acute brain slices containing V1 from PV:Ai32 mice were prepared. L2/3 pyramidal neurons were identified by their morphologies and voltage clamped at −50 mV with the same internal solution and perfusion buffer as mIPSC recording. A 0.45 mm2 square region surrounding the recorded neuron was divided into 15 by 15 grids. Brief blue light pulses (10 ms at 100% intensity with 1 s inter‐stimulus interval) were controlled by Polygon400 (Mightex, USA) and delivered via a water immersion objective (10×, 0.30 NA, Olympus) to each grid in a fixed pseudo‐random order and repeated three times. Light‐evoked inhibitory postsynaptic currents (LEIPSC) were recorded.
Whole‐cell current clamp recording of light‐evoked action potential
Acute brain slices containing V1 from 5‐ to 8‐week‐old male PV:Ai32 mice were prepared as described above. PV neurons were identified by the EYFP and current clamped with glass pipette filled with internal solution containing 130 mM K‐gluconate, 10 mM KCl, 10 mM HEPES, 0.2 mM EGTA, 0.5 mM NaGTP, 4 mM MgATP, 10 mM Na‐phosphocreatine. Action potential was evoked by trains of 5 ms 470 nm blue light pulses (Lumen Dynamics) at varied frequency for 1 s.
Sleep deprivation
Mice were kept awake by gentle handling, during which EEG/EMG signals were acquired simultaneously.
Polysomnography recording and analysis
Five‐ to six‐week‐old PV:Ai9 mice were anesthetized by 1–2% isoflurane vapor and head‐fixed. The skull was exposed. Two epidural screws were implanted (B: −1 to 2 mm, L: 2 to 3 mm) as EEG electrodes. Two resin‐insulated stainless‐steel wires bared at the tip region were implanted into the dorsal neck muscles and sutured in place to record the EMG. All electrodes were connected to a 4‐pin socket connector that was glued to the skull by dental cement. After surgery, the wound was treated with triple antibiotic ointment and mice were allowed to recover in their home cage for at least 7 days before the experiment. Mice were transferred to the customized chamber at least 48 h before the recording for habituation.
During recording, EEG and EMG signals were sampled at 1,024 Hz with 1,000 times preamplifier gain and bandpass filtered at EEG: 0.3–1,000 Hz, EMG: 1–5,000 Hz. All signals were acquired by Spike Hound.
States of wakefulness, NREM, and REM sleep were first automatically analyzed in 10‐s epoch by Neuro Score (Data Sciences International) using the preconfigured protocol. EMG was used to discriminate between wake and sleep. EMG threshold was manually defined for each mouse. Epochs with more than 20% of the absolute EMG samples above the threshold were classified as wakefulness. In addition, slow wave ratio (δ power/total power) was used to discriminate between NREM sleep (with ratio ≥ 0.4) and wake/REM sleep (with ratio < 0.4). Theta ratio (θ power/total power) was used to discriminate REM sleep (with ratio ≥ 3) from other sleep stages (with ratio < 3). All automatic analyses were visually confirmed. Amount of time spent in each of three arousal states (NREM, REM, and wakefulness) was quantified. NREM and REM sleep amount were added up as total sleep time. Time spend in wake and sleep were then compared between groups.
Corticosterone measurement
Blood was collected during acute brain slice dissection for both ad libitum sleep and SD mice. Blood was then incubated at RT for 2 h and centrifuged at 2,000 g for 20 min at 4°C to isolate serum. The corticosterone levels were measured by corticosterone ELISA kit.
Visual deprivation
PV:Ai9 mice entrained to the regular light/dark cycle were allowed to habituate to the customized light‐proof, well‐ventilated entrainment chambers in their homecages at least 2 days before the experiment. Visual deprivation was achieved by keeping one group of mice in the dark during the last light cycle before they were sacrificed for experiment.
Immunohistochemistry
Mice were perfused with ice‐cold 1× PBS and 4% paraformaldehyde (PFA) and fixed overnight in 4% PFA. 50 μm coronal slices were cut with a vibratome (Lecia, VT1000s) and preserved in cryoprotectant solution (30% sucrose, 20% ethylene glycol and 50% 1 × PBS) at −20°C before used. Before staining, slices were washed with 1× PBS followed by 2 h incubation with blocking solution containing 5% normal goat serum (Sigma, USA) and 0.1% Triton X‐100 in 1 × PBS at RT. After that, slices were incubated with primary antibody diluted with blocking solution overnight at 4°C. Slices were then washed with 1 × PBS with 0.1% Tween 20, 15 min/time for three times and once more with 1 × PBS. Slices were incubated with secondary antibody diluted with blocking solution for 2 h at RT. The washing steps were repeated again and slices were mounted on glass slide and air‐dried overnight. At last, mounting medium (Prolong gold antifade reagent, Invitrogen) was added on slices to preserve fluorescence signal before confocal imaging. Antibodies used include: GFP polyclonal chicken antibody (1:1,000, Abcam, ab13970); GAD 65 monoclonal mouse antibody (1:1,000, Abcam, ab26113); Goat anti‐chicken Alexa Fluor 488 (1:1,000, Thermo Fisher, A‐11039); and Goat anti‐mouse Alexa Fluor 488 (1:1,000, Abcam, ab150113). Images were acquired by a spinning disk microscope (Andor) with 20× air objective.
Virus injection and cranial window preparation
Six‐ to eight‐week‐old PV:Ai9 mice were maintained anesthetized by 1–2% isoflurane vapor and head‐fixed in a stereotaxic frame. Ophthalmic ointment (Cisen, China) was applied to the eyes and mice were kept on a heating pad where the temperature was maintained at around 37°C. Skin was sterilized by iodine and a craniotomy was made above the right visual cortex. A 3 × 3 mm circular piece of skull was removed (3.0 mm post the bregma suture, 2.0 mm from the mild line suture) and the dura was kept intact and moist with sterile saline. 50–100 nl AAV2‐hSyn‐GCaMP6s (1 × 1012 genome copies per ml, Taitool, China) was delivered using a beveled glass pipette by a microsyringe pump (Stoelting, USA) at 30 nl/min. Total 4–5 injections were made at a depth of ~ 250 μm in the primary visual cortex. After the virus injection, a cover glass was glued to the skull over the circular opening by using polyacrylic glue (Elmer's, USA). A customized headplate was then cemented to the skull around the center of the cranial window. Skin was sutured back around the headplate and lidocaine (Sigma, USA) and triple antibiotic ointment (DearGo, China) were applied around the wound. Mice were transferred back to their homecages after fully recovered from anesthesia and were closely monitored during the following week. Virus was allowed to expressed for at least 14 days before the experiment.
In vivo two‐photon calcium imaging
The whole procedure was illustrated in Fig 5A. Specifically, all mice were gentle handled 5–10 min for 2–3 times between ZT0‐4 on day 0. From days 1 to 3, mice were allowed to habituate to the head fixation and free running in the mobile homecage (Neurotar, Finland) under the two‐photon microscopy twice a day, 1 h each between ZT10‐12 and ZT22‐24. All mice were imaged at least twice (ZT0 and ZT12) post‐training. Some mice were repeatedly imaged four times at ZT0, ZT6, ZT12, and ZT18 with shuffled order. All imaging sections were spaced out with at least 36 h interval, during which mice were housed in their homecages with activity monitored by video.
For each imaging section, mice were head‐fixed under the microcopy at least 10 min before the imaging started. Imaging was performed using a two‐photon laser‐scanning microscope (FVMPE‐RS, OLYMPUS) coupled with a Mai Tai Insight DS Dual‐OL laser (Spectra Physics). The tunable laser was set to 920 nm (~ 30–70 mW average power on the sample) for GCaMP6s and the 1,040 nm laser was used for exciting the tdTomato. The emission filter set consisted of a 570 nm dichroic mirror and a 540/50 nm band‐pass filter. Fluorescence was detected using GaAsP photomultiplier tubes. Images of 512 × 512 pixels (x/y resolution: 0.663 μm/pixel) were scanned in a line mode repeated three times by a resonant galvanometer and 3,000–6,000 frames were acquired at 10 Hz for each field of view (FOV). The locomotor activity of all mice during all imaging section was monitored with Motion Tracker (Neurotar, Finland) and/or camera.
To image the same population of neurons across sections, the same FOV was tracked by vascular features, cortical depth, and spatial location of landmarks (bright and stable structures of somas). Only neurons showing clear and similar cell morphology were included for analysis.
Estimation of locomotor activity
For locomotion monitored with Motion tracker (Neurotar, Finland), the locomotion was measured by travel speed in cm/s and travel distance (cm). For mice monitored by camera, the locomotor activity was analyzed post‐hoc by EthoVision XT (Noldus 11.5).
dLGN optogenetic manipulations
500 nl AAV2‐hSyn‐hChR2(H134R)‐mCherry virus or AAV2‐hSyn‐mCherry‐WPRE (Taitool) was injected into the right dLGN with stereotaxic atlas (AP ‐2.3; ML 2.15; DV 2.5; ∠ 90°) at a rate of 50 nl/min. A 200 μm OD optical fiber (NA = 0.37, Inper) was implanted lateral over dLGN with the same coordination. Cranial window over the right primary visual cortex was prepared and AAV virus expressing GCaMP6s was injected into the superficial layer of V1 as describe above. The recovery and habituation were similar as the regular two‐photon imaging. Optogenetic stimulation of dLGN was achieved using a 470 nm Fiber‐Coupled LED (Thorlabs, M470F3) controlled by a LED Driver (Thorlabs, DC2200). Black ceramic sleeve was used to prevent the light from leaking. Light intensity at the fiber tip was set at 75–80 mW/mm2 and 10 ms light pulses were delivered at 0.1 Hz for 15 trials. The GCaMP6s signal was acquired in the same way as described in the above section. At the end of experiment, animals were sacrificed and 50 μm coronal brain slices were sectioned with a vibratome to confirm the position of optic fiber an ChR2 expression (Fig 7D 2).
Quantification and statistical analysis
Whole‐cell recordings
Miniature postsynaptic currents
mEPSCs and mIPSCs were analyzed using the MiniAnalysis program (Synaptosoft, Decatur, GA) as described previously (Bridi et al, 2020). Event detection threshold was set at three times over the RMS noise. At least 300 events with rise time ≤ 3 ms for mEPSCs and ≤ 5 ms for mIPSCs were selected for each cell to calculate frequency and amplitude. And non‐overlapping events were used to construct the average trace and estimate the decay time.
Spontaneous postsynaptic currents
Spontaneous EPSCs and IPSCs were analyzed by calculating the unit charge (nA/s) with customized code (MATLAB, MathWorks) as described previously (Bridi et al, 2020). Briefly, the root mean square (RMS) noise of each 500 msec segment was calculated and subtracted. Charge was calculated as the integral of the post‐subtracted signal of total 3–4 min of recording.
ChR2‐assisted mapping of the connectivity between PV and pyramidal neurons
The max amplitude of the response evoked within 30 msec time window post‐light stimulation was measured. Only reliably evoked responses (2 out of 3 repeats) larger than 60 pA were considered as LEIPSCs and the mean was used as the measurement of the connection strength. A heatmap showing the connection strength for each recorded neuron was generated. Maps from each group were either aligned by the patched cell soma (soma‐align) or slice pia (pia‐align). For soma alignment, maps from the same group were simply averaged since the relative soma position of the recorded neuron was the same across maps. For pia alignment, the 369 × 680 pixels DIC image showing the shape of the cortical slice, the 15 by 15 grids, and the position of the recording electrode using the 10× objective was taken at the end of each recording. The variation in cortical thickness was first corrected by scaling individual DIC image to match that in the reference image (ref, Fig 1A 3 top right). The amplitude of the LEIPSCs was used to define the pixel values for the corresponding grid in the scaled image. Then the pia in the ref was aligned with that of the scaled DIC image and the pixel value was projected onto the ref. After projecting LEIPSCs from all neurons, the average was calculated for each pixel in the reference image and the pia‐aligned map was generated and compared between ZT0 and ZT12. All analyses were done by Clampfit (Molecular Devices, CA, USA) and customized matlab programs.
Calcium image analysis
Images were analyzed post‐hoc using customized matlab programs modified based on the original open‐source package available online (https://github.com/flatironinstitute/CalmAn‐MATLAB). Briefly, stacked time‐series images were registered by aligning to a target image using a cross‐correlation‐based registration algorithm (discrete Fourier transformation, DFT, algorithm) to correct brain motion (Xin et al, 2019). The target image was obtained by mean projection of visually identified frames (≥ 200 frames) with few motion artifacts. Regions of interest (ROIs) were drawn for individual neuron manually based on neuronal shape using a customized GUI and the raw fluorescence signal (F) for all ROIs from all frames was extracted. To calculate ΔF/F 0, the initial 200 frames for each cell were excluded to avoid imaging artifact.
Baseline fluorescence (F 0) was computed via a sliding‐window (400 frames for PV neurons and 550 frames for non‐PV neurons) using a 30% quantile cutoff. The correlation coefficient (R 2) between the converted ΔF/F 0 waveform and the raw F waveform was calculated and only cells with R 2 larger than 0.70 were included for final analysis.
To estimate neural activity from the calcium signals, the sum of ΔF/F 0 (sum(ΔF/F 0)) was calculated after subtracting the three times of the minimal RMS noise of each cell.
Light‐evoked Ca2+ signal analysis
The dLGN‐evoked Ca2+ responses in the superficial layer of V1 was calculated as (F–F 0)/F 0 × 100%. The average of the 10 frames (1 s) before the onset of light stimulation was used as F 0. The peak Ca2+ intensity within the 1 s time window following stimulus onset was measured as the F. Only responses larger than 15% were included for final analysis. To analyze the fraction of responsive neurons, neurons showing at least one effective response at either ZT0 or 12 were counted and divided to the total neurons that had detectable spontaneous activity within the FOV. Response fidelity for each responsive neuron was calculated as the proportion of evoked responses out of the 15 stimuli.
Statistics
For all figures, the sample size is indicated as (mice, cells) or otherwise specified. Statistical analysis was performed by Prism V6.0 software (GraphPad Software, Inc.). Wilcoxon signed‐rank test was used for two paired groups analysis. Mann–Whitney U test was used for two unpaired groups analysis. For more than three unpaired groups analysis, one‐way ANOVA followed by Holm‐Sidak's multiple comparison test was used. For acute drug wash‐on and off recordings from the same neuron, one‐way repeated measures ANOVA followed by Holm–Sidak's multiple comparison test was used. Cumulative distributions were compared with the Kolmogorov–Smirnov (K‐S) test. Error bars in all figures indicate standard error of mean (s.e.m). Only significant comparisons were labeled in the figures. The level of significance was set at P < 0.05. *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.
Author contributions
Fang‐Jiao Zong: Data curation; formal analysis; investigation; methodology; writing – original draft. Xia Min: Investigation; methodology. Yan Zhang: Software; formal analysis. Xue‐Ting Zhang: Investigation. Yang Liu: Validation; investigation. Yu‐Ke Li: Validation; investigation. Kai‐Wen He: Conceptualization; resources; supervision; funding acquisition; investigation; visualization; methodology; writing – original draft; project administration; writing – review and editing.
Disclosure and competing interests statement
The authors declare that they have no conflict of interest.
Supporting information
Acknowledgments
We thank Dr. Junying Yuan, Dr. Alfredo Kirkwood, Dr. Aaron Gitler for insightful discussion. This work is supported by NSFC (Grant No. 32070963, 31700917), Shanghai Science and Technology Development Foundation (Grant No. 22ZR1475100), and Shanghai Municipal Science and Technology Major Project (Grant No. 2019SHZDZX02) to K‐WH.
The EMBO Journal (2023) 42: e111304
Data availability
The customized MATLAB codes are available on Github [https://github.com/KaiWen‐Helab/Matlab‐code/tree/master].
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