Abstract
Taxol (a trademarked product of Bristol-Myers Squibb) is a complex isoprenoid natural product which has displayed potent anticancer activity. Originally isolated from the Pacific yew tree (Taxus brevifolia), Taxol has been mass-produced through processes reliant on plant-derived biosynthesis. Recently, there have been alternative efforts to reconstitute the biosynthetic process through technically convenient microbial hosts, which offer unmatched growth kinetics and engineering potential. Such an approach is made challenging by the need to successfully introduce the significantly foreign enzymatic steps responsible for eventual biosynthesis. Doing so, however, offers the potential to engineer more efficient and economical production processes and the opportunity to design and produce tailored analog compounds with enhanced properties. This mini review will specifically focus on heterologous biosynthesis as it applies to Taxol with an emphasis on the challenges associated with introducing and reconstituting the downstream reaction steps needed for final bioactivity.
Keywords: Taxol, Natural products, Metabolic engineering, Heterologous biosynthesis, S. cerevisiae, E. coli
Introduction
The term “complex natural products” has traditionally been reserved for those compounds with both extensive biosynthetic pathways and unique final molecular structures (Katz 1997). Examples include the polyketide compound erythromycin A (antibiotic), the nonribosomal peptide compound echinomycin (anticancer), and the isoprenoid compound Taxol (anticancer; Fig. 1). Each is represented by a multi-step biosynthetic scheme which includes coordinated enzymatic activity to produce the final molecular structure. Such complexity poses challenges during initial attempts to elucidate the underlying biosynthetic pathways responsible for compound formation and during early compound molecular characterization efforts. Challenges are also encountered during attempts at pathway engineering and chemical or biological synthesis for the purpose of compound overproduction. Yet, despite this complexity and the resulting challenges, basic and applied research emerged and persists because of the medicinal value associated with such natural products, a property intrinsically associated with the same molecular complexity that complicates characterization and production efforts.
Fig. 1.

Representative complex natural products
Among the groups of natural products capable of being classified as complex are the isoprenoids. This is a particularly large classification with tens of thousands of examples having been identified including those, like Taxol, which have resulted in blockbuster drug therapies (McGarvey and Croteau 1995; Sacchettini and Poulter 1997). Focusing on the Taxol compound, the final product meets the criteria for complexity as a result of a putative 19 step biosynthetic pathway and a final molecular architecture featuring 11 chiral centers (Croteau et al. 2006) (Fig. 2). The biosynthetic process begins with the intracellular supply of universal isoprenoid substrates isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) followed by polyisoprene formation of a geranylgeranyl diphosphate (GGPP) molecule which is cyclized by the first dedicated enzyme (taxadiene synthase) of the biosynthetic pathway (Wildung and Croteau 1996). In the larger context of complex natural product biosynthesis, an early stage intermediate, such as taxadiene, provides a platform for tailoring reactions to produce the final compound. These include reduction, hydroxylation, acetylation, glycosylation, methylation, and other modifications to confer the specific molecular architecture needed for bioactivity (Olano et al. 2010; Walsh et al. 2001). In the case of Taxol, there are reactions dedicated to hydroxylations, oxidation, epoxidation, acetylations, benzoylations, and an amino acid modification and addition. Notably, there is the utilization of several cytochrome P450 hydroxylase enzymes within the Taxol tailoring reactions (Jennewein et al. 2004b; Kaspera and Croteau 2006).
Fig. 2.

The downstream Taxol biosynthetic pathway. Those enzymes shown have demonstrated activity either biochemically or biosynthetically towards the indicated substrate and include geranylgeranyl diphosphate synthase (GGPPS; Hefner et al. 1998), taxadiene synthase (Wildung and Croteau 1996; Koepp et al. 1995; Huang et al. 2001), taxadiene 5α-hydroxylase (Jennewein et al. 2004a), taxane 2α-O-benzoyltransferase (TBT; Walker and Croteau 2000b), 10-deacetylbaccatin III-10-O-acetyl transferase (DBAT; Walker and Croteau 2000a), baccatin III:3-amino-3-phenylpropanoyltransferase (BAPT; Walker et al. 2002a), and phenylalanine aminomutase (PAM; Walker et al. 2004). Other enzymes (taxadien-5α-ol-O-acetyl transferase, taxoid 10β-hydroxylase, taxoid 2α-hydroxylase, taxoid 9α-hydroxylase, taxane 13α-hydroxylase, taxoid 7β-hydroxylase, and 3′-N-debenzoyl-2′-deoxytaxol N-benzyoyltransferase) have been identified and/or characterized but not conclusively assigned a location in the overall pathway order (Walker et al. 2000; Schoendorf et al. 2001; Chau and Croteau 2004; Croteau et al. 2006; Jennewein et al. 2001; Chau et al. 2004; Walker et al. 2002b). Still other enzymes (taxoid 1 β-hydroxylase, taxoid 9-keto-oxidase, β-phenylalanoyl-CoA ligase, taxoid 2′-hydroxylase, and those involved with oxetane ring formation) have not been identified. IDI isopentenyl diphosphate isomerase, CPR cytochrome P450 reductase
As mentioned, the diverse molecular architectures associated with complex natural products like Taxol are directly responsible for final natural product biological activity. The role of this activity in nature is speculated to be defensive. Foreign organism invasion, cellular damage, and resource limitation have all been linked to natural product formation (Ajikumar et al. 2008; Maplestone et al. 1992). Man-made production efforts are then aimed at harnessing biosynthesis for the purpose of redirecting the medicinal properties of natural products towards human disease, an approach that has been successful and has led to numerous antibiotics, anticancer agents, and other medicines currently available (Newman and Cragg 2007).
However, the therapeutic potential of natural products is often tempered by the non-ideal growth properties of the original hosts responsible for compound formation. Alternative attempts to chemically synthesize the compound must contend with the significant challenges in mimicking natural chemistry, leaving cell-based biosynthesis as the only economical route to production. The slow-growing or fastidious nature of most original cellular producers acts as a final degree of complexity associated with medicinally relevant natural products. Many natural product producers are soil- or marine-dwelling microorganisms. In the case of Taxol and other isoprenoids, plants are a significant source of compounds. Each of these native producers is fastidious in nature, slow-growing, difficult to implement into scaleable production processes, or a combination of these traits. Furthermore, many other natural product producers (>99 %) are considered unculturable (Amann et al. 1995), supporting the viewpoint that the potential of encoded natural product pathways is greatly complicated by the native host producers.
Interestingly, the most technically convenient microbial hosts like Escherichia coli and Saccharomyces cerevisiae, which have been used widely across the biotech industry, have little propensity for natural product biosynthesis. In the context of heterologous biosynthesis, this lack of production has both advantages and disadvantages (Zhang et al. 2011a). First, while there is little question that successful reconstitution of a complex, therapeutically relevant natural product pathway in a convenient microbial heterologous host would aid basic and applied studies, the lack of prerequisite metabolic support increases the challenge of successful reconstitution. For example, a separate metabolic engineering strategy may be required to introduce or enhance substrates required by downstream biosynthetic enzymes. Alternatively, the lack of native natural product pathways may (1) simplify efforts to regulate the introduced pathway; (2) require less metabolic engineering to eliminate “cross talk” with existing natural product pathways; and (3) result in a cleaner purification process without contaminating native products.
Over the last 10 years, several studies have focused on the production of complex plant-derived isoprenoids through E. coli and S. cerevisiae. This review will place particular emphasis on the Taxol biosynthetic pathway and the tailoring reactions needed to generate final bioactivity. Considering that the current state-of-the-art is the production of early stage Taxol intermediates through heterologous hosts, this discussion will summarize success to date and the steps needed to realize and capitalize upon full pathway reconstitution.
Heterologous biosynthetic logic: upstream and downstream components
Being confined to a cellular environment, heterologous production attempts begin with the basic substrates, cofactors, and other metabolites needed to support biosynthesis. Isoprenoid biosynthesis substrates can be derived from one of two pathways, and both have been used in previous heterologous settings. The mevalonate (MVA) pathway, native to S. cerevisiae, begins with acetyl-CoA (Bloch 1992; Miziorko 2011); whereas, the alternative methylerythritol phosphate (MEP) pathway, native to E. coli, begins with a molecule each of pyruvate and glyceraldehyde 3-phosphate (Grawert et al. 2011; Rohmer 1999). These substrates can be linked to primary metabolic pathways that must be re-routed when triggered (either natively or heterologously) for isoprenoid biosynthesis. The formation of the IPP and DMAPP by the MVA or MEP pathways is considered the upstream portion of overall biosynthesis. In the context of heterologous metabolic engineering, in which the objective is to establish production of a non-native isoprenoid compound, the substrate provision pathways must minimally be able to support even the smallest level of eventual final product formation. Whereas, in pathway metabolic engineering, the goal is to maximize specific productivities and the upstream pathway must then be optimized to support final compound overproduction.
The downstream portion of isoprenoid biosynthesis are those reactions dedicated to polyisoprene formation, template compound cyclization, and template compound tailoring. Unlike the upstream pathway, there is generally no direct link to primary metabolism and the introduced metabolism is foreign. As such, there are a series of precautions to be taken to aid the process of functional gene expression. These challenges derive primarily because of the cell-specific differences between native and heterologous hosts. As an example, the genetic, physiological, and structural differences between a plant cell and an E. coli cell impact everything from gene expression templates and parameters to physical enzyme location post-expression.
With regards to Taxol, both S. cerevisiae and E. coli have been used to generate early stage intermediates in the downstream pathway (Ajikumar et al. 2010; Dejong et al. 2006; Engels et al. 2008; Huang et al. 2001). Both hosts are strong candidates for heterologous biosynthesis as a function of their rapid growth rates (compared to plant cells) and range of molecular biology tools to facilitate and optimize metabolic engineering efforts. Given the fact that the entire pathway has yet to be incorporated into either host, it is unknown which will serve the purpose of complete Taxol heterologous biosynthesis. The choice may then be decided by individual researcher preference or biased by host- or pathway-specific features. Over the last 10 years, the emergence of facilitating technical developments for hosts like E. coli and S. cerevisiae have continually fueled and allowed increasing attempts at heterologous natural product biosynthesis with great success. For example, gene synthesis and chromosomal engineering methodology helped expedite the heterologous transfer and reconstitution process for artemisinin (an antimalarial compound) and Taxol intermediate production (Ajikumar et al. 2010; Martin et al. 2003; Ro et al. 2006). The downstream pathways for complex isopreneoid compounds typically feature several steps catalyzed by plant cytochrome P450 enzymes and a partner reductase (Croteau et al. 2006; Jennewein et al. 2005; Kaspera and Croteau 2006). Besides the usual challenges in establishing functional enzymatic activity in a heterologous host, these enzymes are membrane bound and may benefit from a heterologous cellular structure similar to that found in plants. From this perspective, S. cerevisiae would be at an advantage relative to E. coli. However, similar to the advances that have aided biosynthetic efforts to this stage, should new technology allow for efficient and functional expression of a series of such complicated enzymes within either E. coli or S. cerevisiae, both hosts would then be viable options for heterologous biosynthesis.
Challenges and options associated with the heterologous implementation of the Taxol downstream biosynthetic pathway
The challenges facing heterologous Taxol formation through microbial hosts mirror those for other complex natural products. Namely, genetic material must be available for transfer, successful gene expression and enzymatic activity must be accomplished in the new host, and sensitive analytical capabilities must be available to characterize and quantify compound formation. The process is aided by a working knowledge of the biochemical steps in product formation and experimental options to address the many issues that can arise during heterologous production attempts. In this regard, current work took advantage of previously established results in Taxol pathway analysis and emerging technology available with microbial hosts to assist reconstitution efforts.
The first requirement in establishing heterologous biosynthesis is to have access to the native biosynthetic genes responsible for product formation. Given the medicinal value of natural products like Taxol, significant investment has been made to elucidate the responsible biosynthetic pathway. On this front, Rodney Croteau’s group at Washington State University made significant advances in identifying genes of the Taxol pathway and testing expression in heterologous hosts.
Early efforts to identify the exact biosynthetic steps towards Taxol’s production were published in the mid to late 1990s (Hefner et al. 1998, 1996; Hezari et al. 1995; Koepp et al. 1995; Walker et al. 1999; Wildung and Croteau 1996). This work identified the geranylgeranyl diphosphate synthase, taxadiene synthase, cytochrome P450 hydroxylase, and acetyltransferase needed to make the hypothesized first three dedicated intermediates of the Taxol pathway. Four of these six initial isolation studies were conducted with native Taxus plant sources providing the enzymes of interest. A concerted attempt was then made to generate cDNA libraries from Taxus cell cultures and to begin identifying and confirming subsequent pathway genes (Chau and Croteau 2004; Chau et al. 2004; Huang et al. 2001; Jennewein et al. 2001, 2004b; Long and Croteau 2005; Schoendorf et al. 2001; Walker and Croteau 2000a, b; Walker et al. 2002a, b, 2000, 2004).
These results were commendable from several viewpoints. First, the work helped establish a hypothetical biosynthetic path to the final Taxol molecule (Fig. 2), while simultaneously providing the genetic blueprint to consider reconstructing the downstream pathway in heterologous hosts. Both E. coli and S. cerevisiae were used throughout studies to overproduce and characterize pathway enzymes. On occasion, insect (Spodoptera frugiperda 9) hosts were used as alternatives to achieve higher expression levels or when problems emerged with the more convenient heterologous hosts (Chau et al. 2004; Jennewein et al. 2004a, 2005, 2001). In each of these examples, a pathway P450 or P450 reductase was also tested for expression in S. cerevisiae. Generally, Croteau’s group favored S. cerevisiae for P450 heterologous expression (Jennewein et al. 2003, 2004a; Schoendorf et al. 2001; Chau et al. 2004), most likely owing to the similarities to the native plant host. E. coli was prominently featured as an expression host with other pathway genes (Huang et al. 1998; Walker and Croteau 2000a, b; Walker et al. 2002a, b, 2000, 2004). Each of these heterologous expression attempts set the stage for heterologous biosynthetic production.
Not surprisingly, Croteau’s group took the lead in attempting to produce intermediates from the Taxol pathway through technically convenient heterologous hosts. The first attempts used E. coli to express the taxadiene synthase gene for the purpose of producing the first Taxol pathway intermediate (Huang et al. 2001). Prior to this success, E. coli taxadiene synthase expression and activity was systematically evaluated across gene expression parameters and hosts (Huang et al. 1998; Wildung and Croteau 1996; Williams et al. 2000). The T7 promoter expression system was featured in these attempts; however, variations were made according to the strains tested for expression (including K vs. B lineages). Expression was also optimized to avoid inclusion body formation and/or inactivity by the use of fusion proteins and the removal of an N-terminal signaling peptide which was specific for subcellular membranes in plant cells. These approaches, coupled with induced expression at reduced temperatures (20–25°C), resulted in much improved enzyme levels and activity. However, before heterologous taxadiene production was achieved, separate genes encoding for MEP pathway steps or an Erwinia herbicola geranylgeranyl diphosphate synthase were required to allow final taxadiene titers of 1.3 mg/L.
An ambitious attempt at S. cerevisiae heterologous production was made through the coordinated expression of the first five hypothesized steps in Taxol formation (from IPP and DMAPP). The geranylgeranyl diphosphate synthase and taxadiene synthase were again truncated to remove plant-specific signal sequences; whereas, constructs for the expected next three steps (taxadiene 5α-hydroxylase, taxadien-5α-ol-O-acetyl transferase, and taxoid 10β-hydroxylase responsible for taxadien-5α-ol, taxadien-5α-yl-acetate, and taxadien-5α-acetoxy-10β-ol, respectively) were used based upon successful previous expression attempts in either E. coli or S. cerevisiae (Jennewein et al. 2004a, 2001; Schoendorf et al. 2001). Taxadiene titers were reported at 1.0 mg/L though only trace amounts of the second intermediate (taxadien-5α-ol) were observed (Dejong et al. 2006); taxadien-5α-yl-acetate and taxadien-5α-acetoxy-10β-ol were not conclusively identified, emphasizing the uncertainty with the overall pathway past taxadien-5α-ol formation (Fig. 2). A later effort by Stefan Jennewein’s group to optimize the heterologous production of taxadiene from S. cerevisiae was notable for the application of metabolic engineering to improve biosynthetic substrate availability, the use of a codon-optimized taxadiene synthase gene, and final taxadiene levels of 8.7 mg/L (Engels et al. 2008).
However, in either case, whether for biochemical characterization or heterologous production, ensuring successful gene expression in foreign hosts is not trivial. The body of work presented above served as a valuable basis for recent attempts at heterologous Taxol (or other isoprenoid) production attempts. The most recent efforts derive both from the focused work on Taxol biosynthesis and the more general advances in metabolic engineering and gene expression that have occurred over the last 10 years. A combination of metabolic engineering and optimized gene expression led to improved (~300 mg/L) production of taxadiene from E. coli (Ajikumar et al. 2010). Here, metabolic engineering was used to balance the flow of carbon between upstream and downstream pathways as a way to optimize final titers. However, when establishing the downstream pathway within a foreign host, great care must be taken to correctly design the newly introduced gene(s) for successful expression. Croteau’s group recognized this by removing plastidial regions from the 5′ regions of genes to be expressed in E. coli. In addition to this step, the approach by Ajikumar et al. featured gene synthesis, gene dosage levels (chromosomal and varying copy number plasmid expression), promoter variation (T7, T5, and trc), and process temperature to influence and optimize final enzyme function in the context of heterologous biosynthesis. The combination of metabolic engineering and gene expression technology, together with the prior knowledge provided by the efforts of the Croteau group, allowed high level taxadiene formation from E. coli (Table 1).
Table 1.
Genetic, protein, and process modifications to facilitate high titer production of taxadiene and taxadien-5α-ol from E. coli
| Gene synthesis | N-terminal peptide removal | N-terminal peptide addition | Linker region to produce fusion protein | Reduced temperature culture conditions | Bioreactor production | |
|---|---|---|---|---|---|---|
| TXS and GGPPS | ✓ | ✓ | ✓ | ✓ | ||
| P450 and CPR | ✓ | ✓ | ✓ (P450 only) | ✓ | ✓ | ✓ |
TXS taxadiene synthase, GGPPS geranylgeranyl diphosphate synthase, P450 cytochrome P450, CPR cytochrome P450 reductase
The engineering approaches mentioned above were first used to maximize E. coli taxadiene formation. However, subsequent P450 steps were made more complicated for several reasons. First, these enzymes are membrane associated with the endoplasmic reticulum of native hosts (Bernhardt 2006). Approximating this membrane localization in E. coli will clearly be challenging. However, taking the lead from numerous groups that have focused on E. coli gene expression of mammalian and plant P450 enzymes (Barnes 1996; Barnes et al. 1991; Chang et al. 2007; Jenkins et al. 1998; Leonard et al. 2006; Pritchard et al. 2006; Yun et al. 2006), functional expression of the first Taxol pathway P450 was accomplished (Ajikumar et al. 2010). Doing so required truncation of the native transmembrane region (with three different truncation lengths tested) and further modification of the N-terminal portion of the enzyme to include an eight amino acid membrane anchor peptide sequence (MALLLAVF) which has proven functional in E. coli (Barnes et al. 1991). Furthermore, as in the case of the taxadiene synthase, the P450 gene was synthesized to eliminate any codon bias (this same step was also taken for the accompanying P450 reductase), and reduced temperature induction conditions and other process parameters were modified so as to maximize eventual production (Table 1).
An additional complication of the Taxol P450 enzymes is the need for a dedicated reductase (CPR) partner. This can be mitigated by the native capabilities to complement reductase activity when using S. cerevisiae, but the same level of convenience may not be provided with E. coli (Barnes et al. 1991; Jenkins and Waterman 1998; Jennewein et al. 2005; Oeda et al. 1985). Again thanks to work by Rodney Croteau’s group, a reductase has been isolated from Taxus cuspidata (Jennewein et al. 2005). The reductase was also modified by N-terminal transmembrane region removal prior to covalently coupling the reductase to the P450 through a linker peptide (Ajikumar et al. 2010), as a means to colocalize the enzyme pair and to mimic highly active fusion P450-reductase examples found in nature (Fisher et al. 1992; Fisher et al. 1996; Leonard et al. 2006; Munro et al. 2002; Narhi and Fulco 1982). A series of codon-optimized, truncated fusion P450-reductase pairs were then tested for coupling to the previously optimized metabolism for E. coli taxadiene formation with titers of taxadien-5α-ol reaching 58 mg/L. Productions efforts also revealed, however, the formation of an unwanted hydroxylated isomer, which suggests inefficiencies in expression design and/or protein activity. This unwanted side product presents a current challenge in optimizing production through E. coli. However, given successful previous efforts to apply protein engineering to P450 enzymes (Grogan 2011; Urlacher and Girhard 2011), there is reason to believe similar strategies could be applied for the purpose of improving the specific productivity of taxadien-5α-ol using the E. coli system.
In summary, the last 15 years have seen increasing efforts to heterologously produce complex isoprenoid compounds using hosts such as E. coli. In the case of the Taxol system, the combination of an emerging biosynthetic pathway and improvements in the expression technology available to transfer this pathway into alternative hosts has led to successful production of the first two dedicated pathway intermediates. The question now turns to complete pathway implementation and optimization for sufficient heterologous production and which cellular platform will eventually better serve this purpose.
Complete biosynthesis: a combination of heterologous and pathway metabolic engineering
The eventual goal of heterologous biosynthesis is to produce the original natural product and designed analogs at titers sufficient to allow mass distribution. This can only be done with successful metabolic engineering, both to establish initial production and then to maximize the flow of carbon through upstream and downstream biosynthetic components. Initial reconstitution has been accomplished for complex polyketide and nonribosomal peptide natural products, with both examples requiring multiple tailoring reactions to complete biosynthesis (Table 2). In these cases, pathway metabolic engineering has not yet allowed overproduction. In other words, though each final natural product has been impressively generated through a surrogate host, current titers are too low to present a viable production route.
Table 2.
Representative complex natural products heterologously produced through E. coli
| Compound | Total biosynthetic stepsa | Heterologous product (biosynthetic number of steps) | Number of P450 enzymes introduced | Final titer (mg/L) | References |
|---|---|---|---|---|---|
| Erythromycin Ab (polyketide) | 20 | Erythromycin A (20) | 2 | 4 | (Zhang et al. 2011b, 2010) |
| Echinomycinb (nonribosomal peptide) | 14 | Echinomycin (14) | 1 | 0.3 | (Watanabe et al. 2006) |
| Taxol (isoprenoid) | 19 | Taxadien-5α-ol (2) | 1 | 58 | (Ajikumar et al. 2010) |
Not including those steps required to provide the starting substrates for compound biosynthesis. Number for Taxol begins from geranylgeranyl diphosphate and is considered putative as not all steps have been conclusively identified
Both systems include modular enzymes responsible for catalyzing multiple reaction steps. For simplification, these enzymes have been counted as one step such that the total number of steps is equal to the number of heterologous enzymes required
Interestingly, pathway metabolic engineering has been used successfully to generate substantial titers of heterologous isoprenoid compounds (Ajikumar et al. 2010; Chang et al. 2007; Ro et al. 2006). However, these compounds have only been intermediates in the overall downstream pathways. In the case of the Taxol intermediate taxadiene, grams per liter titers have been accomplished through careful balancing of the upstream and downstream biosynthetic pathways coupled to small-scale bioreactor systems (Ajikumar et al. 2010). The artemisinin intermediate amorphadiene has also been produced at grams per liter levels through the application of metabolic and process engineering (Martin et al. 2003; Tsuruta et al. 2009). Production of the remaining downstream intermediates for both compounds requires the introduction of P450 and other tailoring enzymes and has not reached the same concentration levels associated with taxadiene and amorphadiene (although it should be noted that the artemisinin intermediate artemisinic acid (Ro et al. 2006) could be produced and linked to a semi-synthetic strategy to generate the full compound).
This scenario points to the challenges in establishing complete and sufficient biosynthesis, especially when unique biosynthetic steps are introduced to a significantly different host system. Furthermore, in the case of Taxol, several steps in the overall pathway have not been conclusively identified or confirmed. As such, research must continue to be directed at strategies to discover and characterize missing pathway enzymes. However, if the heterologous route is ever to become viable, these challenges must be overcome. In addition, high titer production must also be reproducible, non-toxic to the new host (allowing high-cell-density bioprocesses), and adjustable for the production of rationally designed analogs. In the case of Taxol, heterologous biosynthesis would allow several opportunities. First, an E. coli or S. cerevisiae production platform (either for the final compound or an intermediate capable of being converted to the final compound via semi-synthesis) would offer a potentially faster and more economical route to the current Taxol product. Second, reconstitution offers the opportunity to directly alter biosynthesis for the purpose of producing new analogs with improved potency and a broader therapeutic spectrum (Long et al. 1998; Woo et al. 1994; Young et al. 1992; Zhang et al. 2005) or for the purpose of improving post-administration in vivo bioavailability (a problem that has plagued the hydrophobic Taxol molecule (Hennenfent and Govindan 2006)).
This is the vision of heterologous biosynthesis. It will be interesting to see where the field stands in another 10 years. Now, with the advantage of hindsight, it is clear the approach can be used for the production of complex natural compounds, most notably, polyketides and nonribosomal peptides. Over the next decade, the continued application of metabolic engineering concepts will decide the range of compounds to be completely biosynthesized and the production titers that would support eventual process viability.
Acknowledgments
The authors thank the Milheim Foundation (2006–17) and the National Institutes of Health (GM085323) for support towards projects related to heterologous Taxol biosynthesis.
Contributor Information
Ming Jiang, Department of Chemical and Biological Engineering, State University of New York at Buffalo, Buffalo, NY 14260, USA.
Gregory Stephanopoulos, Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Blaine A. Pfeifer, Department of Chemical and Biological Engineering, State University of New York at Buffalo, Buffalo, NY 14260, USA
References
- Ajikumar PK, Tyo K, Carlsen S, Mucha O, Phon TH, Stephanopoulos G (2008) Terpenoids: opportunities for biosynthesis of natural product drugs using engineered microorganisms. Mol Pharm 5:167–190 [DOI] [PubMed] [Google Scholar]
- Ajikumar PK, Xiao WH, Tyo KE, Wang Y, Simeon F, Leonard E, Mucha O, Phon TH, Pfeifer B, Stephanopoulos G (2010) Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli. Science 330:70–74 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143–169 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Barnes HJ (1996) Maximizing expression of eukaryotic cytochrome P450s in Escherichia coli. Methods Enzymol 272:3–14 [DOI] [PubMed] [Google Scholar]
- Barnes HJ, Arlotto MP, Waterman MR (1991) Expression and enzymatic activity of recombinant cytochrome P450 17 alpha-hydroxylase in Escherichia coli. Proc Natl Acad Sci USA 88:5597–5601 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bernhardt R (2006) Cytochromes P450 as versatile biocatalysts. J Biotechnol 124:128–145 [DOI] [PubMed] [Google Scholar]
- Bloch K (1992) Sterol molecule: structure, biosynthesis, and function. Steroids 57:378–383 [DOI] [PubMed] [Google Scholar]
- Chang MC, Eachus RA, Trieu W, Ro DK, Keasling JD (2007) Engineering Escherichia coli for production of functionalized terpenoids using plant P450s. Nat Chem Biol 3:274–277 [DOI] [PubMed] [Google Scholar]
- Chau M, Croteau R (2004) Molecular cloning and characterization of a cytochrome P450 taxoid 2alpha-hydroxylase involved in Taxol biosynthesis. Arch Biochem Biophys 427:48–57 [DOI] [PubMed] [Google Scholar]
- Chau M, Jennewein S, Walker K, Croteau R (2004) Taxol biosynthesis: molecular cloning and characterization of a cytochrome P450 taxoid 7 beta-hydroxylase. Chem Biol 11:663–672 [DOI] [PubMed] [Google Scholar]
- Croteau R, Ketchum RE, Long RM, Kaspera R, Wildung MR (2006) Taxol biosynthesis and molecular genetics. Phytochem Rev Proc Phytochem Soc Eur 5:75–97 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dejong JM, Liu Y, Bollon AP, Long RM, Jennewein S, Williams D, Croteau RB (2006) Genetic engineering of taxol biosynthetic genes in Saccharomyces cerevisiae. Biotechnol Bioeng 93:212–224 [DOI] [PubMed] [Google Scholar]
- Engels B, Dahm P, Jennewein S (2008) Metabolic engineering of taxadiene biosynthesis in yeast as a first step towards Taxol (Paclitaxel) production. Metab Eng 10:201–206 [DOI] [PubMed] [Google Scholar]
- Fisher CW, Shet MS, Caudle DL, Martin-Wixtrom CA, Estabrook RW (1992) High-level expression in Escherichia coli of enzymatically active fusion proteins containing the domains of mammalian cytochromes P450 and NADPH-P450 reductase flavoprotein. Proc Natl Acad Sci USA 89:10817–10821 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fisher CW, Shet MS, Estabrook RW (1996) Construction of plasmids and expression in Escherichia coli of enzymatically active fusion proteins containing the heme-domain of a P450 linked to NADPH-P450 reductase. Methods Enzymol 272:15–25 [DOI] [PubMed] [Google Scholar]
- Grawert T, Groll M, Rohdich F, Bacher A, Eisenreich W (2011) Biochemistry of the non-mevalonate isoprenoid pathway. Cell Mol Life Sci 68(23):3797–3814 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Grogan G (2011) Cytochromes P450: exploiting diversity and enabling application as biocatalysts. Curr Opin Chem Biol 15:241–248 [DOI] [PubMed] [Google Scholar]
- Hefner J, Rubenstein SM, Ketchum RE, Gibson DM, Williams RM, Croteau R (1996) Cytochrome P450-catalyzed hydroxylation of taxa-4(5),11(12)-diene to taxa-4(20),11(12)-dien-5alpha-ol: the first oxygenation step in taxol biosynthesis. Chem Biol 3:479–489 [DOI] [PubMed] [Google Scholar]
- Hefner J, Ketchum RE, Croteau R (1998) Cloning and functional expression of a cDNA encoding geranylgeranyl diphosphate synthase from Taxus canadensis and assessment of the role of this prenyltransferase in cells induced for taxol production. Arch Biochem Biophys 360:62–74 [DOI] [PubMed] [Google Scholar]
- Hennenfent KL, Govindan R (2006) Novel formulations of taxanes: a review. Old wine in a new bottle? Ann Oncol 17:735–749 [DOI] [PubMed] [Google Scholar]
- Hezari M, Lewis NG, Croteau R (1995) Purification and characterization of taxa-4(5),11(12)-diene synthase from Pacific yew (Taxus brevifolia) that catalyzes the first committed step of taxol biosynthesis. Arch Biochem Biophys 322:437–444 [DOI] [PubMed] [Google Scholar]
- Huang KX, Huang QL, Wildung MR, Croteau R, Scott AI (1998) Overproduction, in Escherichia coli, of soluble taxadiene synthase, a key enzyme in the Taxol biosynthetic pathway. Protein Expr Purif 13:90–96 [DOI] [PubMed] [Google Scholar]
- Huang Q, Roessner CA, Croteau R, Scott AI (2001) Engineering Escherichia coli for the synthesis of taxadiene, a key intermediate in the biosynthesis of taxol. Bioorg Med Chem 9:2237–2242 [DOI] [PubMed] [Google Scholar]
- Jenkins CM, Waterman MR (1998) NADPH-flavodoxin reductase and flavodoxin from Escherichia coli: characteristics as a soluble microsomal P450 reductase. Biochemistry 37:6106–6113 [DOI] [PubMed] [Google Scholar]
- Jenkins CM, Pikuleva I, Waterman MR (1998) Expression of eukaryotic cytochromes P450 in E. coli. Methods Mol Biol 107:181–193 [DOI] [PubMed] [Google Scholar]
- Jennewein S, Rithner CD, Williams RM, Croteau RB (2001) Taxol biosynthesis: taxane 13 alpha-hydroxylase is a cytochrome P450-dependent monooxygenase. Proc Natl Acad Sci USA 98:13595–13600 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jennewein S, Rithner CD, Williams RM, Croteau R (2003) Taxoid metabolism: taxoid 14beta-hydroxylase is a cytochrome P450-dependent monooxygenase. Arch Biochem Biophys 413:262–270 [DOI] [PubMed] [Google Scholar]
- Jennewein S, Long RM, Williams RM, Croteau R (2004a) Cytochrome p450 taxadiene 5alpha-hydroxylase, a mechanistically unusual monooxygenase catalyzing the first oxygenation step of taxol biosynthesis. Chem Biol 11:379–387 [DOI] [PubMed] [Google Scholar]
- Jennewein S, Wildung MR, Chau M, Walker K, Croteau R (2004b) Random sequencing of an induced Taxus cell cDNA library for identification of clones involved in Taxol biosynthesis. Proc Natl Acad Sci USA 101:9149–9154 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jennewein S, Park H, DeJong JM, Long RM, Bollon AP, Croteau RB (2005) Coexpression in yeast of Taxus cytochrome P450 reductase with cytochrome P450 oxygenases involved in Taxol biosynthesis. Biotechnol Bioeng 89:588–598 [DOI] [PubMed] [Google Scholar]
- Kaspera R, Croteau R (2006) Cytochrome P450 oxygenases of Taxol biosynthesis. Phytochem Rev 5:433–444 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Katz L (1997) Manipulation of modular polyketide synthases. Chem Rev 97:2557–2576 [DOI] [PubMed] [Google Scholar]
- Koepp AE, Hezari M, Zajicek J, Vogel BS, LaFever RE, Lewis NG, Croteau R (1995) Cyclization of geranylgeranyl diphosphate to taxa-4(5),11(12)-diene is the committed step of taxol biosynthesis in Pacific yew. J Biol Chem 270:8686–8690 [DOI] [PubMed] [Google Scholar]
- Leonard E, Yan Y, Koffas MA (2006) Functional expression of a P450 flavonoid hydroxylase for the biosynthesis of plant-specific hydroxylated flavonols in Escherichia coli. Metab Eng 8:172–181 [DOI] [PubMed] [Google Scholar]
- Long RM, Croteau R (2005) Preliminary assessment of the C13-side chain 2′-hydroxylase involved in taxol biosynthesis. Biochem Biophys Res Commun 338:410–417 [DOI] [PubMed] [Google Scholar]
- Long BH, Carboni JM, Wasserman AJ, Cornell LA, Casazza AM, Jensen PR, Lindel T, Fenical W, Fairchild CR (1998) Eleutherobin, a novel cytotoxic agent that induces tubulin polymerization, is similar to paclitaxel (Taxol). Cancer Res 58:1111–1115 [PubMed] [Google Scholar]
- Maplestone RA, Stone MJ, Williams DH (1992) The evolutionary role of secondary metabolites—a review. Gene 115:151–157 [DOI] [PubMed] [Google Scholar]
- Martin VJ, Pitera DJ, Withers ST, Newman JD, Keasling JD (2003) Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat Biotechnol 21:796–802 [DOI] [PubMed] [Google Scholar]
- McGarvey DJ, Croteau R (1995) Terpenoid metabolism. Plant Cell 7:1015–1026 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miziorko HM (2011) Enzymes of the mevalonate pathway of isoprenoid biosynthesis. Arch Biochem Biophys 505:131–143 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Munro AW, Leys DG, McLean KJ, Marshall KR, Ost TW, Daff S, Miles CS, Chapman SK, Lysek DA, Moser CC, Page CC, Dutton PL (2002) P450 BM3: the very model of a modern flavocytochrome. Trends Biochem Sci 27:250–257 [DOI] [PubMed] [Google Scholar]
- Narhi LO, Fulco AJ (1982) Phenobarbital induction of a soluble cytochrome P-450-dependent fatty acid monooxygenase in Bacillus megaterium. J Biol Chem 257:2147–2150 [PubMed] [Google Scholar]
- Newman DJ, Cragg GM (2007) Natural products as sources of new drugs over the last 25 years. J Nat Prod 70:461–477 [DOI] [PubMed] [Google Scholar]
- Oeda K, Sakaki T, Ohkawa H (1985) Expression of rat liver cytochrome P-450MC cDNA in Saccharomyces cerevisiae. DNA 4:203–210 [DOI] [PubMed] [Google Scholar]
- Olano C, Mendez C, Salas JA (2010) Post-PKS tailoring steps in natural product-producing actinomycetes from the perspective of combinatorial biosynthesis. Nat Prod Rep 27:571–616 [DOI] [PubMed] [Google Scholar]
- Pritchard MP, McLaughlin L, Friedberg T (2006) Establishment of functional human cytochrome P450 monooxygenase systems in Escherichia coli. Methods Mol Biol 320:19–29 [DOI] [PubMed] [Google Scholar]
- Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, Ham TS, Kirby J, Chang MC, Withers ST, Shiba Y, Sarpong R, Keasling JD (2006) Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440:940–943 [DOI] [PubMed] [Google Scholar]
- Rohmer M (1999) The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants. Nat Prod Rep 16:565–574 [DOI] [PubMed] [Google Scholar]
- Sacchettini JC, Poulter CD (1997) Creating isoprenoid diversity. Science 277:1788–1789 [DOI] [PubMed] [Google Scholar]
- Schoendorf A, Rithner CD, Williams RM, Croteau RB (2001) Molecular cloning of a cytochrome P450 taxane 10 beta-hydroxylase cDNA from Taxus and functional expression in yeast. Proc Natl Acad Sci USA 98:1501–1506 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tsuruta H, Paddon CJ, Eng D, Lenihan JR, Horning T, Anthony LC, Regentin R, Keasling JD, Renninger NS, Newman JD (2009) High-level production of amorpha-4,11-diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli. PLoS One 4:e4489. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Urlacher VB, Girhard M (2011) Cytochrome P450 monooxygenases: an update on perspectives for synthetic application. Trends in Biotechnology 30:26–36 [DOI] [PubMed] [Google Scholar]
- Walker K, Croteau R (2000a) Molecular cloning of a 10-deacetylbaccatin III-10-O-acetyl transferase cDNA from Taxus and functional expression in Escherichia coli. Proc Natl Acad Sci USA 97:583–587 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walker K, Croteau R (2000b) Taxol biosynthesis: molecular cloning of a benzoyl-CoA:taxane 2alpha-O-benzoyltransferase cDNA from Taxus and functional expression in Escherichia coli. Proc Natl Acad Sci USA 97:13591–13596 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walker K, Ketchum RE, Hezari M, Gatfield D, Goleniowski M, Barthol A, Croteau R (1999) Partial purification and characterization of acetyl coenzyme A: taxa-4(20),11(12)-dien-5alpha-ol O-acetyl transferase that catalyzes the first acylation step of taxol biosynthesis. Arch Biochem Biophys 364:273–279 [DOI] [PubMed] [Google Scholar]
- Walker K, Schoendorf A, Croteau R (2000) Molecular cloning of a taxa-4(20),11(12)-dien-5alpha-ol-O-acetyl transferase cDNA from Taxus and functional expression in Escherichia coli. Arch Biochem Biophys 374:371–380 [DOI] [PubMed] [Google Scholar]
- Walker K, Fujisaki S, Long R, Croteau R (2002a) Molecular cloning and heterologous expression of the C-13 phenylpropanoid side chain-CoA acyltransferase that functions in Taxol biosynthesis. Proc Natl Acad Sci USA 99:12715–12720 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walker K, Long R, Croteau R (2002b) The final acylation step in taxol biosynthesis: cloning of the taxoid C13-side-chain N-benzoyltransferase from Taxus. Proc Natl Acad Sci USA 99:9166–9171 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walker KD, Klettke K, Akiyama T, Croteau R (2004) Cloning, heterologous expression, and characterization of a phenylalanine aminomutase involved in Taxol biosynthesis. J Biol Chem 279:53947–53954 [DOI] [PubMed] [Google Scholar]
- Walsh CT, Chen H, Keating TA, Hubbard BK, Losey HC, Luo L, Marshall CG, Miller DA, Patel HM (2001) Tailoring enzymes that modify nonribosomal peptides during and after chain elongation on NRPS assembly lines. Curr Opin Chem Biol 5:525–534 [DOI] [PubMed] [Google Scholar]
- Watanabe K, Hotta K, Praseuth AP, Koketsu K, Migita A, Boddy CN, Wang CC, Oguri H, Oikawa H (2006) Total biosynthesis of antitumor nonribosomal peptides Escherichia coli. Nat Chem Biol 2:423–428 [DOI] [PubMed] [Google Scholar]
- Wildung MR, Croteau R (1996) A cDNA clone for taxadiene synthase, the diterpene cyclase that catalyzes the committed step of taxol biosynthesis. J Biol Chem 271:9201–9204 [DOI] [PubMed] [Google Scholar]
- Williams DC, Wildung MR, Jin AQ, Dalal D, Oliver JS, Coates RM, Croteau R (2000) Heterologous expression and characterization of a “Pseudomature” form of taxadiene synthase involved in paclitaxel (Taxol) biosynthesis and evaluation of a potential intermediate and inhibitors of the multistep diterpene cyclization reaction. Arch Biochem Biophys 379:137–146 [DOI] [PubMed] [Google Scholar]
- Woo DD, Miao SY, Pelayo JC, Woolf AS (1994) Taxol inhibits progression of congenital polycystic kidney disease. Nature 368:750–753 [DOI] [PubMed] [Google Scholar]
- Young DH, Michelotti EL, Swindell CS, Krauss NE (1992) Antifungal properties of taxol and various analogues. Experientia 48:882–885 [DOI] [PubMed] [Google Scholar]
- Yun CH, Yim SK, Kim DH, Ahn T (2006) Functional expression of human cytochrome P450 enzymes in Escherichia coli. Curr Drug Metab 7:411–429 [DOI] [PubMed] [Google Scholar]
- Zhang B, Maiti A, Shively S, Lakhani F, McDonald-Jones G, Bruce J, Lee EB, Xie SX, Joyce S, Li C, Toleikis PM, Lee VM, Trojanowski JQ (2005) Microtubule-binding drugs offset tau sequestration by stabilizing microtubules and reversing fast axonal transport deficits in a tauopathy model. Proc Natl Acad Sci USA 102:227–231 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhang H, Wang Y, Wu J, Skalina K, Pfeifer BA (2010) Complete biosynthesis of erythromycin A and designed analogs using E. coli as a heterologous host. Chem Biol 17:1232–1240 [DOI] [PubMed] [Google Scholar]
- Zhang H, Boghigian BA, Armando J, Pfeifer BA (2011a) Methods and options for the heterologous production of complex natural products. Nat Prod Rep 28:125–151 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhang H, Skalina K, Jiang M, Pfeifer BA (2011b) Improved E. coli erythromycin a production through the application of metabolic and bioprocess engineering. Biotechnology Progress 28:292–296 [DOI] [PubMed] [Google Scholar]
