Abstract
The H9N2 avian influenza (AI) has become endemic in poultry in many countries since the 1990s, which has caused considerable economic losses in the poultry industry. Considering the long history of the low pathogenicity H9N2 AI in many countries, once H9N2 AI is introduced, it is more difficult to eradicate than high pathogenicity AI. Various preventive measures and strategies, including vaccination and active national surveillance, have been used to control the Y439 lineage of H9N2 AI in South Korea, but it took a long time for the H9N2 virus to disappear from the fields. By contrast, the novel Y280 lineage of H9N2 AI was introduced in June 2020 and has spread nationwide. This study reviews the history, genetic and pathogenic characteristics, and control strategies for Korean H9N2 AI. This review may provide some clues for establishing control strategies for endemic AIV and a newly introduced Y280 lineage of H9N2 AI in South Korea.
Keywords: Avian influenza, H9N2 virus, history, pathogenicity, vaccine
INTRODUCTION
H9N2 avian influenza viruses (AIVs) have spilled over from wild birds, their natural host, to domestic poultry. These viruses have become endemic in poultry in many countries since the 1990s. H9N2 AIVs can be broadly categorized into two major lineages: Eurasian and American. Eurasian H9N2 AIVs, in particular, have circulated in poultry and are classified further into several lineages: G1 (represented by A/quail/Hong Kong/G1/1997), Y280 (represented by A/duck/Hong Kong/Y280/1997; also known as the BJ94 or G9 lineage) and Y439 (represented by A/duck/Hong Kong/Y439/1997; also known as the Korean lineage) lineage [1,2,3].
The Y439 lineage of H9N2 AIV is a group originating from Eurasian wild birds, and it has been reported in many regions, including Europe and Asia [4]. In South Korea, the Y439 lineage of H9N2 AIV was first reported in chicken farms in 1996 and has since spread in poultry and become endemic since 2000s [5,6,7]. Outbreaks of the Y439 lineage of H9N2 AI decreased after vaccinating layer and broiler breeders since 2007. However, even after vaccination, the virus has continued to circulate mainly in Korean native chicken farms and live bird markets (LBM), there have been no reports since it was last detected in 2018 [8,9,10].
The G1 lineage of H9N2 AIV is the most widely distributed H9N2 AIV group in Asia, the Middle East, and Africa [11,12]. The lineage is divided into two sublineages according to the geographical distribution and genetic association: “G1-Eastern” and “G1-Western” [3,13,14]. Among them, the G1-Eastern lineage is endemic to poultry in southern China and neighboring Southeast Asian countries, Vietnam and Cambodia. On the other hand, the G1-Western is distributed across a wide range of regions, from Asia, including Bangladesh and India, to the Middle East and Africa [14].
The Y280 lineage of H9N2 AIV has become the dominant lineage in China since the mid-1990s and has evolved into sublineages (presented as BJ/94, HK/G9, and SH/F98) and various genotypes (A-W, G1-G81) [15,16,17]. This lineage is distributed in Asian countries, such as China, Vietnam, Cambodia, Indonesia, and Myanmar. In Vietnam, which borders China, the Y280 lineage of H9N2 AIV has circulated mainly in poultry since 2012 [4,18]. Recently, it was reported in Japan and eastern Russia, which does not border China [19,20]. In addition, the Y280 lineage of H9N2 AIV was first isolated from LBMs in South Korea in June 2020 and has spread rapidly nationwide [9,10].
Wild birds are the natural host of AIVs, but H9N2 AIV began to be reported in poultry, such as chicken, quail, guinea fowl and partridge in Asia [4], in the mid-1990s and has become endemic in poultry beyond the species barrier without pre-adaptation. The endemicity of Asian H9N2 AI in poultry has promoted the emergence of various novel AIVs and the evolution of H9 AIVs [2]. Infection of H9N2 AIV is an important issue for animal diseases and public health [21]. Previous studies have shown that H9N2 AIVs donated internal gene sets to other human infecting viruses, including H5N1, H5N6, H7N9, and H10N8 [22,23,24,25,26,27].
In South Korea, the Y439 lineage of H9N2 AIV, which occurred for a long period, has not been reported since 2018, but the Y280 lineage of H9N2 AI was newly introduced in 2020. Considering the history of the endemicity of the H9N2 AI in many countries, including South Korea, once H9N2 AI is introduced, it is more difficult to eradicate than high pathogenicity avian influenza (HPAI). This study reviewed the history of Korean H9N2 AI, the genetic and pathogenic characteristics of H9N2 AIVs, and the control strategies, including vaccination in South Korea.
HISTORY AND CURRENT SITUATION OF Y280 LINEAGE OF H9N2 AIV IN ASIA
Since the mid-1990s, the Y280 lineage of H9N2 AIV has become the dominant strain and circulated in chickens in China [2,28,29]. From 1995 to June 2022, 8,968 cases of the Y280 lineage of H9N2 AIVs were isolated worldwide (Supplementary Fig. 1, excluding mammal infections, based on the Global Initiative for Sharing All Influenza Data [https://www.gisaid.org/]). Of these, 8,311 cases, approximately 92.7%, were reported in China, where the outbreaks have increased dramatically since 2009. Although vaccination programs for chickens have been in place for a long time in China [17,27,29], the Y280 lineage of H9N2 AIV has been endemic to poultry and has increased the genetic diversity of the virus due to the high proportion of traditional small-scale mixed breeding and the preference for fresh poultry trading through the LBMs [30,31]. According to Gu et al. [27], at least 23 genotypes of Y280 lineage of H9N2 AIV isolated in China from 1994 to 2014 were identified, of which three types were suggested to be major genotypes: A, H, and S. In particular, genotype S is a reassortant of the PB2 and M genes of the G1 lineage of H9N2 AIV based on the gene constellation of the Y280 lineage of H9N2 AIV and has become dominant in China since 2010 [32]. The Y280 lineage of H9N2 AIV, which was almost restricted to China before 2010, has spread to other Asian countries, including Vietnam, Cambodia, Indonesia, and recently South Korea (Fig. 1) [4,9,18,33,34].
In Hong Kong, the Y280 lineage of H9N2 AIV was first isolated in 1997, and some cases subsequently occurred in poultry and humans. Since the early 2000s, cases of H9N2 AI infection have been reported sporadically until recently [1,35,36]. Interestingly, in Japan, the Y280 lineage of H9N2 AIV was first isolated in imported chicken meat products collected in 1997, 2001, and 2002. In addition, in 2015–2016, H9N2 AIVs were isolated in illegally imported poultry products by flight passengers from China and Taiwan into Japan during the quarantine process [19,37].
In Vietnam and Cambodia, Y280 H9N2 AI was reported in 2009 and 2013. Since then, the Y280 lineage of H9N2 AIV has become dominant in poultry, mainly in LBMs [38,39,40]. The Y280 lineage of H9N2 AIV of the two countries was genetically closely related to the strain in China. These viruses may have flowed into adjacent countries locally through active poultry trading [19,33,40].
Since the mid-2010s, the Y280 lineage of H9N2 AI has been spreading further in Southeast Asia, and the virus has also been identified in Myanmar, Indonesia, and Laos (Fig. 1, Supplementary Fig. 1). These viruses are genetically closely related to the Y280 lineage of H9N2 AIV in China [41,42,43]. In addition, The H9N2 AIV was first identified in Russia in 2012 but was not defined genetically. Later, in 2018, the Y280 lineage of H9N2 AIV was isolated at a poultry farm in Primorsky Krai, Far East region of Russia, and was found to be genetically related to that isolated in Tajikistan, Central Asia [20].
Long-distance migrating wild birds, as shown in the high pathogenicity H5 AIV, are one of the factors of AIV transmission and spread [44,45,46,47]. In China, there have been several sporadic reports of H9N2 AIV detection in wild birds since 2010 [48,49,50,51,52]. Most H9N2 AIVs in wild birds have been identified as the Eurasian aquatic origin, but some cases were North American and poultry-derived G1 or Y280 lineages. Thus far, there is no direct evidence that the Y280 lineage of H9N2 AIV has been transmitted between countries or continents by wild birds, despite the surveillance programs conducted in several countries [9,53,54,55]. Although the detection of poultry-derived H9N2 AIV in wild birds was limited, the virus can be disseminated by wild migratory birds if this virus acquires more adaptability to wild waterfowl.
Considering the spread of the H9N2 AIV in neighboring countries of China and the detection of H9N2 AIV through the quarantine process in Japan, the Y280 lineage of H9N2 AIV could be transmitted by the movement of contaminated poultry products, people, or goods [56,57]. Another transmission factor, the LBM, is a central point in generating and spreading novel viruses to other species due to the high prevalence and genetic diversity of H9N2 AIV and should be considered a hotspot for surveillance programs [18,30,58].
THE OUTBREAK AND GENOTYPE OF H9N2 AI IN SOUTH KOREA
Since the first outbreak of H9N2 in South Korea in 1996, the Y439 lineage of the H9N2 virus has been endemic since the 2000s (Fig. 2). Nationwide outbreaks of H9N2 AI, which have caused considerable economic losses, have led to the use of vaccination programs since 2007 [7]. Since then, the outbreaks of H9N2 AI in poultry farms, such as layers and breeders, have decreased gradually, but the virus was not completely eradicated and was circulated continuously, mainly in Korean native chickens in LBM, until 2018 (data not shown). The Y439 lineage of H9N2 AIV, which has circulated in South Korea for a long time, has continuously evolved by antigenic drift and reassortment with other AIVs from wild birds and domestic ducks in LBMs [5,59,60]. The Y439 lineage of H9N2 AIV in South Korea is divided broadly into two genotypes according to their gene constellation (Fig. 3). The first is the MS96-like genotype, represented by A/chicken/Korea/MS96/1996 (H9N2) and its reassortant viruses with the genes from domestic ducks and wild bird origin, which was distributed in poultry until 2008 (designated as K1, K2, and K3 genotype in Youk et al. [59]). Second, the A146/09-like genotype, represented by A/chicken/Korea/A146/2009 (H9N2), is a reassortant of the hemagglutinin (HA) and nucleoprotein genes of the MS96-like virus with six internal genes originating from wild aquatic birds; this strain has become the dominant strain (designated as K4 genotype in Youk et al. [59]). In South Korea, the national active surveillance program was established for HPAI control, and various measures have been applied, including movement restriction, disinfection, and the culling of infected animals since 2008 (Fig. 4). These preventive measures may play a role in reducing the low pathogenicity avian influenza (LPAI) virus and HPAI virus, particularly in domestic ducks and LBM. Consequently, the emergency of reassortant viruses has been reduced, and finally, the Y439 lineage of H9N2 AIV has disappeared in South Korea since 2018.
In June 2020, the Y280 lineage of H9N2 AIV was first isolated from Korean native chickens in LBM by active surveillance programs, and has since spread nationwide (Fig. 2). A/chicken/Korea/LBM261/2020 (H9N2), which was the virus of the index case in South Korea, was closely related to the A/chicken/Shandong/1844/2019 (H9N2) virus of China. The Korean Y280 lineage of H9N2 AIV is designated as the LBM261/20-like genotype, which belongs to a subgroup of genotype S in China (Fig. 3) [9]. Five hundred sixteen cases of the Korean Y280 lineage of H9N2 AI have been detected nationwide in various breeds, such as Korean native chickens, layer and broiler chickens by active surveillance of domestic poultry from June 2020 to July 2022 (Fig. 2). Although the route of introduction of the novel H9N2 AIV into South Korea remains unclear, the likelihood of introduction by wild migratory birds is considered low. This is because the poultry-derived Y280 lineage of H9N2 AIV in wild birds is rarely reported even in China [48,49,50,51,52], and there is no virus isolation in wild birds, including feces, captive birds, carcass through intensive active surveillance in South Korea. Therefore, the virus is likely to be introduced through contaminated poultry products or human activities, as shown in the periodical AIV detection cases in the quarantine process in Japan [9].
PATHOGENIC CHARACTERISTICS OF H9N2 AIV IN CHICKENS AND DUCKS
Although H9N2 AIV is classified as a low pathogenicity virus in poultry, it is causing economic damage to the poultry industry by the decrease in spawning and some mortality rates in commercial chickens. Most chickens infected with H9N2 AIV at farms showed typical signs of influenza, such as respiratory symptoms, egg drop, and mortality (0% to 40%) (summarized in Table 1) [2,5,61,62]. On the other hand, experimental infections in specific-pathogen-free chickens showed no mortality and only mild symptoms, such as depression and decreased feed intake [5,19,63,64,65,66]. This disparity between laboratory and field infections with H9N2 AIV suggested that the pathogenicity of H9N2 AIV can vary depending on ages, breeds, the level of immunity, and another secondary opportunistic pathogen infection [5,64,67,68,69].
Table 1. Summary of clinical signs of H9N2 viruses from the Y439 and Y280 lineage in farms and animal experiments, respectively.
Cases | Species | Y439 lineage | Y280 lineage | ||
---|---|---|---|---|---|
Clinical signs | Reference | Clinical signs | Reference | ||
Field (farm) | Chicken (commercial) | Egg drop, respiratory sign, depression, diarrhea, weight loss, decreased feed intake, mortality (0%–30%) | [2,5,61,63] | Egg drop, respiratory signs (coughing, sneezing, gasping), mortality (10%–40%) | [1,2,62] |
Animal experiment | Chicken (SPF) | No mortality, depression | [5,63,65,66] | No mortality, depression, diarrhea, decreased feed intake | [16,17,19,64,66,71,89,97,102] |
Viral shedding: higher titer via CL route | Viral shedding: higher titer via OP route | ||||
Mice | Mostly no clinical signs and mortality, weight loss, inappetence | [5,92,107] | Inappetence, huddling, ruffled fur, labored breathing, hunched posture, respiratory distress, weight loss, mortality (0%–30%) | [2,36,52,82,83,89,91,92,93] |
Bold: observed major clinical symptoms.
SPF, specific-pathogen-free; OP, oropharyngeal; CL, cloacal.
Previous studies have shown that similar clinical signs were observed in infection between the Y439 and Y280 lineage of H9N2 AIVs (Table 1). In the viral shedding, however, there was a significant difference in the preferential replication between the two viruses. The Y280 lineage of H9N2 AIV was replicated more efficiently in the respiratory tract, while the Y439 lineage of H9N2 AIV was replicated more efficiently in the intestinal tract [5,19,65,66]. Thus, the Y280 lineage of H9N2 AIV can be transmitted airborne more efficiently via the oral-to-oral pathway than the Y439 lineage of H9N2 AIV. This feature can cause a more efficiently spread virus between poultry in the same space. It can be a risk factor that increases the chance of viral infection even between species in contact with infected poultry [2,70,71].
Domestic ducks are intermediate species between poultry and wild waterfowl and have susceptibility and resistance to AIVs [72,73,74]. Experiments with H9N2 AIV infections in domestic ducks are limited, but the results show that most infected ducks were asymptomatic [2,66,75,76]. In addition, viral replication was not detected in most infected ducks and was identified as low titers in oropharyngeal (OP) and cloacal (CL) swabs from a few infected ducks. According to Wang et al. [76], it was confirmed that the genotype S of the Y280 lineage of H9N2 AIV could replicate with relatively high titers in the respiratory tract of the Muscovy duck. Despite the limited cases, some experimental results have shown viral replication of H9N2 AIV in ducks. If the chicken-adapted H9N2 AIV replicates more efficiently in ducks, it can be a potential risk factor in AIV transmission by domestic ducks and wild migratory ducks.
HUMAN INFECTION BY H9N2 AIV
Human infection by the H9N2 AIV was first reported in Hong Kong in 1998 [4]. Since then, sporadic cases have been reported continuously in various countries, mainly China. As of June 2022, 112 cases have been identified in eight countries, including China, Egypt, Bangladesh, and Cambodia. Cases of infection have been reported mainly in people in close contact with infected poultry and meats or exposed to contaminated environments [77,78]. Children under the age of 10 were most infected with H9N2 AIV but developed mild symptoms [79]. On the other hand, the H9N2 AIV is closely involved in other fatal human infections as well as direct infections. The high pathogenicity H5N1 AIV in Hong Kong in 1997 was found to have reassorted from six internal genes of the G1 lineage of H9N2 AIV, excluding HA and neuraminidase [22,80]. In addition, the internal genes of H7N9 AIV, which has 1,568 human infections, including 616 fatal cases (case fatality rate, 39%) in China since 2013, originated from the Y280 lineage of H9N2 AI [23].
Poultry-adapted AIVs exhibit asymptomatic or weak signs and can evolve as potential infection sources in mammals through circulation in poultry [81,82,83]. The HA protein of AIV is determined in the host range by binding with sialic acid on the surface of the host cell. In general, AIV has the highest binding affinity with the α2,3-linked sialic acid of birds, but mutations on the receptor binding sites for high affinity with α2,6-linked sialic acid have been found to increase infectivity in mammals [84,85]. Previous studies reported that leucine (L) in position 226 of the HA proteins plays an important role in the binding affinity to sialic acid as a representative mammalian affinity marker [86,87]. Thus far, the human infection cases by H9N2 AIV were only reported in Y280 and G1 lineages, most of which have a Q226L substitution on the HA protein. In addition, the genotype S of the Y280 lineage, which has been dominant in poultry in China since 2010, has acquired various mammalian affinity markers: H183N, T190V, and Q226L in the HA protein; A588V in the PB2 protein; K356R and S409N in the PA protein; V15I in the M1 protein; I28V and L55F in M2 protein [4,65,88,89,90,91,92]. Newly introduced H9N2 AIV into South Korea in 2020 belonged to genotype S of the Y280 lineage of H9N2 AIV, which has similar genetic characteristics [9].
Although the Y439 lineage of H9N2 AIV had circulated for a long period (1996–2018), there have been no human infection cases in South Korea (Fig. 2). The Korean Y439 lineage of H9N2 AIV had retained poultry affinity markers rather than mammals [9,86]. In mouse experiments, the Y280 lineage of H9N2 AIV replicated well in the respiratory tract of infected mice without adaptation and showed various clinical signs, body weight loss, and mortality, whereas the Y439 lineage of H9N2 AIV showed mostly no clinical signs or mild symptoms, such as inappetence and weight loss (Table 1) [5,89,90,91,92,93]. These results show that the Y439 lineage of H9N2 AIV is at least less lethal in mammalian infections than the Y280 lineage of H9N2 AIV.
CONTROL STRATEGIES OF H9N2 AI IN SOUTH KOREA
National active surveillance for AI has been conducted since 2008 to monitor HPAI in South Korea. Although there is a slight difference annually, 784,836 laboratory diagnostic tests were conducted in 2021 (Fig. 4). The main targets of active surveillance were domestic chickens (approximately 25%), domestic ducks (approximately 21%), wild birds (approximately 2%), LBMs and poultry traders (approximately 2%), and the epidemiological-related places with HPAI outbreaks (approximately 44%). Surveillance has been applied to wild birds for an early warning of HPAI introduction, including fecal samples, captive wild birds, and carcasses. High pathogenicity H5Nx AIVs have been detected in wild birds at the early time of migration before poultry outbreaks [94,95]. Domestic ducks are considered an important target of active surveillance because they can be a potential viral transmission factor, despite not showing clinical symptoms when infected with HPAIV [72]. LBM, which has a high risk of viral transmission by live bird trading, is one of the main targets of surveillance [18,30,58]. For effective control of AIV, surveillance has also been conducted in the place of poultry merchants and farms related to LBMs. Through the surveillance of LBM, the introduction of the Y280 lineage of H9N2 AIV into South Korea was also found [9]. Overall, intensive national active surveillance and followed control measures, such as disinfection, restriction of movement, ban of poultry trading, and stamping out of HPAI-infected birds, have gradually reduced LPAI as well as HPAI in South Korea. Therefore, active surveillance programs are essential to monitor the emergence of new viruses and to control the spread of the viruses in the early stages after detection.
As a preventive measure, vaccination has been used to control H9N2 AI in many countries, particularly in endemic regions. China has implemented vaccination programs for H9N2 AI on chicken farms since 1998 [65,96]. On the other hand, the H9N2 AI still has a high prevalence in China (Supplementary Fig. 1). Moreover, the long-term circulation of the H9N2 AIV in a vaccinated population has caused many virus mutations [17,97,98,99,100,101,102]. This is considered to have been compositely caused by factors, such as inefficient application of vaccines, low doses, low vaccination coverage, and limited updates of vaccine strains [98,100,103]. At least 20 commercial vaccines have been used in China to cope with various viruses, which need to be updated regularly [97,98,101].
The H9N2 AIV has been prevalent nationwide in South Korea since 2000 but officially reported outbreaks were limited (Fig. 2) [7]. Therefore, since 2007, Korean animal health authorities have permitted the use of H9N2 vaccines, which use a single vaccine strain (A/chicken/Korea/01310/2001) of the Y439 lineage of H9N2 AI in layer and breeder chicken to prevent damage to the poultry industry [104,105]. Although outbreaks of the Y439 lineage of H9N2 AI have decreased since the vaccine program, it took more than a decade to disappear from the field (Fig. 2). The H9N2 AIV had remained especially in LBMs and small-scale Korean native chicken farms for a long time. This fact suggests a limit to controlling the H9N2 AI with vaccination alone.
Another factor to consider in vaccination strategy is the possibility of virus mutations and the need to update the vaccine strain. Immune pressure by long-term vaccination may cause genetic and antigenic changes, as shown in China and South Korea [8,28,59,65,101,106,107]. This leads to a gradual decrease in the suitability of vaccine strain and vaccine efficacy in the field. Although the vaccine strain for the Y439 lineage of H9N2 AIV has never been updated in South Korea, but depending on the situation in which the Y439 lineage of H9N2 AI is circulated in poultry again, it will be necessary to update the vaccine strain by the genetic and antigenic characteristics of the field virus.
Unfortunately, as the Y280 lineage of H9N2 AIV was newly introduced into South Korea in 2020, previously authorized vaccines against the Y439 lineage of H9N2 AIV may not be an appropriate option to control the current Y280 lineage of H9N2 AIV because of the difference in the genetic and antigenic features (81.8% nucleotide similarity) [108]. In animal experiments, the Y439 lineage of the vaccine showed only limited efficacy to heterogeneous Y280 lineage of H9N2 AIV (Y439 lineage of the vaccine reduced the replication of the Y280 lineage of H9N2 AIV in the cecal tonsils by 37.5%, and also partially inhibits viral shedding in respiratory and intestinal tracts) (Fig. 5). By contrast, the rgHS314 virus (derived from A/chicken/Korea/H314/2020), which was newly developed as an autogenous vaccine for the current epizootic Y280 lineage of H9N2 AIV, can reduce viral replication significantly with 100% inhibition of virus recovery in the cecal tonsil and no viral shedding in OP and CL swabs (Fig. 5) [108]. New commercial vaccines using the Y280 lineage of the H9N2 vaccine seed strain may be available in the field in the first half of 2023. However, active surveillance and enhanced biosecurity levels must be combined with vaccination to control the H9N2 AI effectively [86,103].
CONCLUSION
This report provides an overview of the history of outbreaks and the control strategies for H9N2 AI in South Korea. Unlike many endemic countries, including China, where new variants of H9N2 AIV are emerging by genetic mutations, in South Korea, the Y439 lineage of H9N2 AI has disappeared by effective control measures, such as continued large-scale national surveillance, improved levels of biosecurity, appropriate vaccination, and culling of poultry in the case of HPAI. Therefore, in order to control the new Korean Y280 lineage of H9N2 AI, measures such as updating vaccine strain, organizing surveillance based on the potential risks of H9N2 AI (breeds and prevalence rate, etc.) and strengthening follow-up monitoring of LBM's supply farms and distribution networks are urgently needed. These intensive measures and strategies will help control the Y280 lineage of H9N2 AI as soon as possible. This review paper is expected to assist in establishing control strategies and provide insight for low pathogenicity H9N2 AI in endemic countries.
Footnotes
Funding: This work was supported by the Animal and Plant Quarantine Agency, Republic of Korea (grant numbers B-1543418-2022-24-01).
Conflict of Interest: The authors declare no conflicts of interest.
- Conceptualization: Lee YJ.
- Data curation: Sagong M, Lee KN, Lee EK, Kang H.
- Formal analysis: Sagong M.
- Investigation: Sagong M, Lee KN, Lee EK, Kang H.
- Methodology: Sagong M.
- Project administration: Lee YJ.
- Resources: Sagong M, Lee KN, Lee EK, Kang H.
- Supervision: Choi YK, Lee YJ.
- Validation: Lee YJ.
- Visualization: Sagong M.
- Writing - original draft: Sagong M.
- Writing - review & editing: Choi YK, Lee YJ.
SUPPLEMENTARY MATERIAL
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