REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
scRNAseq data | (Ravindra et al., 2021)12 | GEO: GSE166766 |
Original code | This manuscript | https://doi.org/10.6084/m9.figshare.19096955 |
Software and algorithms | ||
Seurat (v3.0) | (Butler et al., 2018;92 Satija et al., 2015;25 Stuart et al., 2019)93 |
https://satijalab.org/seurat/ |
ComplexHeatmap (vX.X.X) | (Gu et al., 2016)94 | http://bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html |
Connectome (v1.0.0) | (Raredon et al., 2022)95 | https://msraredon.github.io/Connectome/ |
The Gene Ontology Resource + GO Enrichment Analysis | (Ashburner et al., 200096; Carbon et al., 202197; Mi et al., 2019)98 | http://geneontology.org/ |
Monocle (v3) | (Cao et al., 2019)27 | https://cole-trapnell-lab.github.io/monocle3/ |
ggplot2 (v3.3.5) | (Wickham, 2016)99 | https://ggplot2.tidyverse.org/ |