In Qin et al. (2022), published in Mol. Plant Pathol. 24, 3–15, some of the datasets were not publicly available, and the data availability statement, as well as Supporting Information Table S1 describing the dataset were incomplete. The data were uploaded in the Sequence Read Archive before manuscript submission; however, they were not publicly released because the accession numbers were missing from the data availability statement.
TABLE S1.
Description | Library | Read depth | SRA Run | SRA Experiment |
sRNA datasets | ||||
B.cinerea‐tomato 12 h | I12As | 76.4M | SRR8074941 | SRX4902789 |
I12Bs | 80.0M | SRR8074948 | SRX4902782 | |
I12Cs | 28.5M | SRR8074949 | SRX4902781 | |
B.cinerea‐tomato 16 h | I16As | 85.7M | SRR8074939 | SRX4902791 |
I16Bs | 80.7M | SRR8074938 | SRX4902792 | |
I16Cs | 31.4M | SRR8074937 | SRX4902793 | |
B.cinerea‐tomato 24 h | I24Bs | 57.8M | SRR8074936 | SRX4902794 |
I24Ds | 90.7M | SRR8074935 | SRX4902795 | |
Mock tomato 12 h | M12As | 23M | SRR8074934 | SRX4902796 |
M12Bs | 15.2M | SRR19164837 | SRX15231189 | |
Mock tomato 16 h | M16As | 41.6M | SRR8074933 | SRX4902797 |
M16Bs | 21.1M | SRR19164836 | SRX15231190 | |
Mock tomato 24 h | M24As | 21.7M | SRR8074932 | SRX4902798 |
M24Ds | 18.7M | SRR23048732 | SRX19002251 | |
B.cinerea liquid 16 h | B16As | 72.1M | SRR8074931 | SRX4902799 |
B16Bs | 43.6M | SRR8074930 | SRX4902800 | |
B.cinerea ΔKu70 | Ku70‐1s | 18.4M | SRR19161653 | SRX15228005 |
Ku70‐2s | 23.8M | SRR19161652 | SRX15228006 | |
Ku70‐3s | 15.3M | SRR19161651 | SRX15228007 | |
B.cinerea ΔKu70 ΔDcl1/ΔDcl2 | Dcl1dcl2‐1‐26s | 18.2M | SRR19161650 | SRX15228008 |
Dcl1dcl2‐1‐29s | 22.6M | SRR19161649 | SRX15228009 | |
Dcl1dcl2‐1‐30s | 17.2M | SRR19161648 | SRX15228010 | |
mRNA datasets | ||||
B.cinerea‐tomato 12 h | I12Am | 52.3M | SRR8074958 | SRX4902772 |
I12Bm | 52.4M | SRR8074959 | SRX4902771 | |
I12Cm | 24.9M | SRR8074956 | SRX4902774 | |
B.cinerea‐tomato 16 h | I16Am | 52.5M | SRR8074957 | SRX4902773 |
I16Bm | 53M | SRR8074954 | SRX4902776 | |
I16Cm | 25.8M | SRR8074955 | SRX4902775 | |
B.cinerea‐tomato 24 h | I24Bm | 54.6M | SRR8074952 | SRX4902778 |
I24Cm | 26.1M | SRR8074950 | SRX4902780 | |
I24Dm | 53.9M | SRR8074953 | SRX4902777 | |
Mock tomato 12 h | M12Am | 13.7M | SRR8074951 | SRX4902779 |
M12Bm | 4.3M | SRR8074946 | SRX4902784 | |
M12Bm | 22.4M | SRR19164834 | SRX15231192 | |
Mock tomato 16 h | M16Am | 23.5M | SRR8074947 | SRX4902783 |
M16Bm | 4.7M | SRR8074944 | SRX4902786 | |
M16Bm | 19.8M | SRR19164833 | SRX15231193 | |
Mock tomato 24 h | M24Am | 18.3M | SRR8074945 | SRX4902785 |
M24Dm | 22.9M | SRR23048700 | SRX19002219 | |
B.cinerea liquid 16 h | B16Am | 22.1M | SRR8074943 | SRX4902787 |
B16Bm | 22.2M | SRR8074940 | SRX4902790 |
Tissue type = tomato | I, inoculated tomato leaves; M, mock‐treated tomato leaves |
Tissue type = fungal mycelium | B, B. cinerea liquid culture |
Time point of sampling | 12, 16, 24 = time point of sampling after inoculation (hours) |
Biological replicate | A, B, C, D = code of biological replicate (4 samples were taken, 2 or 3 sequenced) |
Type of RNA sample sequenced | s, small RNA fraction; m, mRNA fraction |
We provide a revised Table S1 that contains all relevant information about the datasets, read depth and the SRA accession numbers.
The revised data availability statement should read as follows:
The data of this project have been deposited in the NCBI database under Bioproject at www.ncbi.nlm.nih.gov/bioproject/ with accession number PRJNA496584. Raw sequence reads are deposited in the Sequence Read Archive at www.ncbi.nlm.nih.gov/sra/ project SRP166089 under accession numbers SRX4902781‐SRX4902782, SRX4902789, SRX4902791‐SRX4902800, SRX15228005 ‐ SRX15228010, SRX15231189, SRX15231190, SRX19002251 (sRNAs) SRX4902771‐SRX4902780 and SRX4902783‐SRX4902787, SRX4902790, SRX15231192, SRX15231193, SRX19002219 (mRNAs).
REFERENCE
- Qin, S. , Veloso, J. , Baak, M. , Boogmans, B. , Bosman, T. , Puccetti, G. et al. (2023) Molecular characterization reveals no functional evidence for naturally occurring cross‐kingdom RNA interference in the early stages of Botrytis cinerea–tomato interaction. Molecular Plant Pathology, 24, 3–15. [DOI] [PMC free article] [PubMed] [Google Scholar]