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. 2023 Feb 16;18(2):e0281590. doi: 10.1371/journal.pone.0281590

Clinical characteristics and severity prediction score of Adenovirus pneumonia in immunocompetent adult

Chao Hu 1,#, Ying Zeng 2,#, Zhi Zhong 2, Li Yang 2, Hui Li 1, Huan Ming Zhang 2, Hong Xia 3,‡,*, Ming Yan Jiang 1,‡,*
Editor: Muhammad Adrish4
PMCID: PMC9934457  PMID: 36795764

Abstract

Background

Compared with children and immunocompromised patients, Adenovirus pneumonia in immunocompetent adults is less common. Evaluation of the applicability of severity score in predicting intensive care unit (ICU) admission of Adenovirus pneumonia is limited.

Methods

We retrospectively reviewed 50 Adenovirus pneumonia inpatients in Xiangtan Central Hospital from 2018 to 2020. Hospitalized patients with no pneumonia or immunosuppression were excluded. Clinical characteristics and chest image at the admission of all patients were collected. Severity scores, including Pneumonia severity index (PSI), CURB-65, SMART-COP, and PaO2/FiO2 combined lymphocyte were evaluated to compare the performance of ICU admission.

Results

Fifty inpatients with Adenovirus pneumonia were selected, 27 (54%) non-ICU and 23 (46%) ICU. Most patients were men (40 [80.00%]). Age median was 46.0 (IQR 31.0–56.0). Patients who required ICU care (n = 23) were more likely to report dyspnea (13[56.52%] vs 6[22.22%]; P = 0.002) and have lower transcutaneous oxygen saturation ([90% (IQR, 90–96), 95% (IQR, 93–96)]; P = 0.032). 76% (38/50) of patients had bilateral parenchymal abnormalities, including 91.30% (21/23) of ICU patients and 62.96% (17/27) of non-ICU patients. 23 Adenovirus pneumonia patients had bacterial infections, 17 had other viruses, and 5 had fungi. Coinfection with virus was more common in non-ICU patients than ICU patients (13[48.15%]VS 4[17.39%], P = 0.024), while bacteria and fungi not. SMART-COP exhibited the best ICU admission evaluation performance in Adenovirus pneumonia patients (AUC = 0.873, p < 0.001) and distributed similar in coinfections and no coinfections (p = 0.26).

Conclusions

In summary, Adenovirus pneumonia is not uncommon in immunocompetent adult patients who are susceptible to coinfection with other etiological illnesses. The initial SMART-COP score is still a reliable and valuable predictor of ICU admission in non-immunocompromised adult inpatients with adenovirus pneumonia.

Introduction

Adenovirus pneumonia, caused by human Adenovirus, consistently reported a high rate of severity and poor prognosis in those with inadequate immunity, such as newborns, hematopoietic stem cell transplant and organ transplant recipients [1, 2]. Recently, it has also been reported frequently in immunocompetent individuals [3, 4]. Heretofore, the etiopathogenesis between non-severe and severe sicknesses in adenovirus pneumonia suffers is still unclear [5]. Early identification of critically ill patients is essential for clinicians [6], which could assist them in conducting proper medical interventions and may improve prognosis. However, few studies have been on early severity recognition in non-immunosuppressed patients of Adenovirus pneumonia. The previous report from immunocompetent adult patients predicted respiratory failure and suggested that initial monocytopenia is a potential predictor [7]. There is little known about the factors that predict admission to the intensive care unit (ICU) in non-immunocompromised Adenovirus pneumonia patients. A recent study from children reported that the severity of Adenovirus infection is significantly correlated with viral load and serotype [8]. Given the difference between children and adults, predicting ICU admission for adenovirus pneumonia in immunocompetent adults is necessary.

Due to the COVID-19 pandemic, some new risk identification tools for viral pneumonia have been reported [9, 10]. Nevertheless, a large retrospective study of COVID-19 showed that recent recognition tools had comparable performance to standard pneumonia prognostic tools [11]. In addition, new tools require more external validation before recommending for their use. More importantly, new tools increase the learning cost of clinicians for learning curve theory. Valuing whether current standard pneumonia scores are appropriately used to predict ICU admission in adenovirus pneumonia can help clinicians quickly identify severe patients using familiar tools.

In this study, we reported the clinical features of Adenovirus pneumonia in immunocompetent adult patients and compared the characteristics between ICU and non-ICU patients. We evaluated current severity prediction tools performance of ICU admission in Adenovirus pneumonia patients to seek an appropriate tool for physicians.

Patients and methods

Study design and participants

The research was done at Xiangtan Central Hospital, a tertiary teaching hospital with 2800 beds and 88,694 hospital admissions per year, with approval by Xiangtan Central Hospital Medical Ethics Committee (NO.2020-11-003). Informed consent requirement was waived by Xiangtan Central Hospital Medical Ethics Committee given the study’s retrospective nature. From 1 April 2018 to 31 November 2020, all consecutive inpatients were eligible to participate if they presented evidence of Adenovirus infection identified by metagenomic next-generation sequencing method (NGS) or Polymerase Chain Reaction (PCR) test. NGS and PCR test were standardized performed at BGI Clinical Laboratories (Shenzhen) Co., Ltd and Sansure(Changsha) Biotech Inc, respectively [12].

Patients were not allowed to participate in the trial if they possessed any of the subsequent: a) Immunocompromised; b) No acute lower respiratory symptoms; c) No pneumonia signs on chest radiography or computed tomography (CT); (Fig 1). Immunocompromised patients in CAP were defined as below [13, 14]: (i) Human immunodeficiency virus infection with CD4+ lymphocyte count < 200 cells/μL or percentage < 14% or by the occurrence of an AIDS-defining condition; (ii) hematopoietic stem cell and solid organ transplantation; (iii) receiving chemotherapy prescribed for ≥ 3 months before admission; (iv) receiving corticosteroid use (≥20 mg/day of prednisone for ≥14d or>600mg cumulative dose of prednisone); (v) receiving biological immunotherapy during the last 6 months;(vi) Receiving disease-modify antirheumatic drugs or other immunosuppressive drugs (eg, cyclophosphamide, methotrexate, cyclosporin, hydroxychloroquine); (vii) congenital/genetic immunodeficiencies; (viii)active malignancy or malignancy during 1 year. Given patients with common comorbid conditions such as diabetes, chronic lung disease, or even those who are pregnancy are typically infected with the same spectrum of organisms that cause CAP in healthier adults [13], our study did not exclude these patients.

Fig 1. Enrollment of patients with Adenovirus pneumonia in immunocompetent adults.

Fig 1

Patients with Adenovirus pneumonia were defined as: individuals with respiratory symptoms and indications, as well as a new pulmonary infiltrate on chest CT combined with positive detection of Adenovirus. Three experienced pulmonologists independently evaluated all the medical records. The diagnosis of adenovirus pneumonia was discussed, and a consensus was reached.

Data collection

A team of qualified physicians retrospectively collected the data from electronic medical records, which included demographic, clinical, laboratory, and radiological characteristics, medical interventions, and prognosis. Collecting the underlying condition, signs and symptoms, test results, chest CT scan, and therapeutic measures during hospitalization. Hospitalization stays and cost were collected. Hospitalization expenses include bed fee, medical service fee (doctor’s consultation fee, nursing fee), examination fee (CT, B-ultrasound, hematology examination, etc.), drug fee, rehabilitation fee, and the cost of materials used during hospitalization (such as pipes, needles, etc.). Patients were separated into two groups based on their critical care unit hospitalization (Fig 1).

Image acquisition and analysis

All chest CTs were taken within 24 hours after being admitted to the hospital. When available, CT scans were compared to baseline images to determine the presence of new abnormalities. CT scans were conducted on a 64-slice spiral CT scanner (GE, USA) at 120 kV, automated mAs, and a reconstructed slice thickness of 1.25 mm. Coronal and sagittal reformations were made available. All chest CT images were reviewed retrospectively by two pulmonary radiologists with ten years of expertise. Consensus was established on the final judgments. The Fleischner Society Nomenclature Committee descriptors were used to interpret radiographic CT scans: ground-glass opacities, consolidation, reticular opacities, nodular opacities, and lymphadenopathy. The abnormalities were distributed unilaterally and bilaterally. The presence of an air bronchogram, thickening of the adjacent pleura, and pleural effusions were noted.

Pathogen detection and lymphocyte subsets analysis

Coinfections were tested in all enrolled patients and determined positive if they met one of the following: 1) detection of virus in respiratory specimens by real-time PCR or NGS, such as respiratory syncytial virus (RSV), influenza virus types A and B (IFV), parainfluenza virus (PIV), cytomegalovirus (CMV), Rhinovirus, coronavirus (CoV), human metapneumovirus (HMPV), Epstein-Barr virus(EBV); 2) positive respiratory antigen in nasopharyngeal swab for IFV, RSV, ADV and PIV; 3) positive antibody in blood for Legionella pneumoniae, Mycoplasma pneumoniae, Chlamydia pneumoniae, respiratory syncytial virus, Adenovirus, Q fever rickettsia, IFV, and PIV; 4) positive bacterial culture from blood, pleural fluid, qualified lower respiratory tract specimen, qualified urine specimen and so on; 5) detection of bacteria in respiratory specimens by NGS. Peripheral lymphocyte subsets were performed by flow cytometer (BD FACSLyric™, Becton, Dickinson and Company, Inc).

Severity scores

The severity of Adenovirus pneumonia was evaluated using PaO2/FiO2 combined lymphocyte, PSI, CURB-65, and SMART-COP. Pneumonia severity scores were calculated on the first day of hospital admission.

Statistical analysis

SPSS was used to process the information (version 19.0, SPSS Inc., Chicago, IL, USA). Chi-squared was used to compare categorical variables described by frequency rates and percentages. The Mann-Whitney test was utilized to compare median and interquartile range (IQR) values for describing continuous variables. The area under the curves (AUCs) were determined to assess the total prediction accuracy of PaO2/FiO2, PSI, CURB-65, and SMART-COP for ICU admission using receiver operating characteristic curves (ROCs). The odds ratio (OR) was adjusted with a 95% percent confidence interval (CI). P value < 0.05 was considered statistically significant.

Results

Demographic characteristics and clinical features in ICU and Non-ICU patients

In total, 50 hospitalized patients with Adenovirus pneumonia were selected. Of these patients, 27 (54%) were admitted to general wards and 23 (46%) were admitted to or moved to the ICU (Table 1). The mean time to admission to the ICU was 1.04 day with 15 patients admitted directly to the ICU and 5 patients moved later. 86.96% (20/23) of patients who required ICU care were men with a median age of 44 years. Of the 50 patients, 14 (28%) had one or more coexisting medical conditions, including hypertension (6[12%]), cardiovascular disease (5[10%]), chronic obstructive pulmonary disease (3[6%]), diabetes (3[6%) and pregnancy (2 [4%]). The main presenting symptoms were fever (47[94%]), cough or sputum (45[90%]), and dyspnea (19[38%]).

Table 1. Epidemiological and clinical characteristics of Adenovirus pneumonia patients on admission.

Characteristics All patients (n = 50, %) ICU care (n = 23, %) No ICU care (n = 27, %) P value
Patients
Age, years 46(31–56) 44(36–61) 49(28–55) 0.599
Sex 0.261
 Male 4080.0 20(86.96) 20(74.07)
 Female 10(20.00) 3(13.04) 7(25.93)
Smoking 23(46.00) 10(43.48) 13(48.13) 0.744
Underlying disease 13(26.00) 6(26.09) 7(25.93) 0.783
Hypertension 6(12.00) 2(8.70) 4(14.81)
Cardiovascular disease 5(10.00) 4(17.39) 1(3.70)
Chronic obstructive pulmonary disease 3(6.00) 1(4.35) 2(7.40)
Diabetes 3(6.00) 2(8.70) 1(3.70)
Pregnancy 2(4.00) 1(4.35) 1(3.70)
Signs and symptoms
Fever 47(94.00) 22(95.65) 25(92.59) 0.362
Dyspnoea 19(38.00) 13(56.52) 6(22.22) 0.002
Myalgia or fatigue 13(26.00) 9(39.13) 4(4.81) 0.053
Cough or sputum 45(90.00) 20(86.96) 25(92.59) 0.512
Diarrhoea 8(16.00) 5(21.74) 3(11.11) 0.312
SPO2, % 94.5(91,96) 92(90,96) 95(93,96) 0.032
Mean arterial pressure 90.17(82.33–96.67) 91.33(84.33–96.67) 88.33(77.33–97.00) 0.613
T,°C 37.85(36.90–38.83) 38.20(37.30–39.00) 37.50(36.70–38.10) 0.106
RR, bpm 21.00(20.00–22.00) 22.00(20.00–23.00) 20.00(20.00–22.00) 0.113
HR, bpm 96.00(85.00–110.50) 96.00(90.00–110.00) 92.00(85.00–112.00) 0.459
Laboratory finding
White blood cell count, x109/L 5.02(4.04–7.62) 5.05(4.16–7.82) 4.93(3.84–7.08) 0.483
Neutrophil count, x109/L 4.06(2.58–5.93) 4.62(3.22–6.44) 3.66(2.15–5.91) 0.189
Lymphocyte count, x109/L 0.80(0.58–1.10) 0.80(0.50–0.90) 0.80(0.60–1.30) 0.159
Haemoglobin, x109/L 131.00(120.75–143.50) 129.00(120.00–141.00) 133.00(121.00–145.00) 0.402
Platelet count, x109/L 128.00(98.50–178.25) 117.00(89.00–171.00) 141.00(120.00–202.00) 0.004
Neutrophil To Lymphocyte Ratio, % 5.45(3.60–8.40) 6.43(4.26–9.03) 4.50(2.73–6.69) 0.044
Lymphocyte To Monocyte Ratio, % 3.29(2.00–4.18) 3.33(2.00–4.50) 2.96(2.00–4.14) 0.579
Platelet To Lymphocyte Ratio, % 169.17(124.69–241.78) 165.45(117.27–253.33) 170.00(128.18–236.25) 0.892
Alanine aminotransferase, U/L 27.85(19.10–48.20) 38.20(21.30–66.80) 27.10(16.90–43.60) 0.119
Aspartate aminotransferase, U/L 43.00(25.38–93.10) 69.50(26.20–148.40) 32.20(22.80–50.00) 0.006
Albumin, g/L 35.40(32.05–39.48) 32.50(28.20–37.60) 38.50(33.80–40.70) 0.001
Globulin, g/L 25.30(23.35–28.40) 23.90(22.40–27.10) 26.50(23.90–28.90) 0.031
Blood urea nitrogen 3.70(2.99–5.40) 3.70(2.50–6.50) 3.60(3.10–4.20) 0.508
Creatinine, μmol/L 77.00(63.50–93.50) 76.00(67.00–93.00) 78.00(62.00–95.00) 0.763
Lactate dehydrogenase, U/L 285.00(198.00–474.50) 474.50(246.50,741.25) 217.00(177.00–350.00) 0.001
Mononucyte count, x109/L 0.29(0.17–0.50) 0.20(0.09–0.39) 0.32(0.18–0.51) 0.064
C-reactive protein, mg/L 72.64(29.44–122.18) 76.65(35.40–185.71) 61.06(26.77–112.52) 0.198
PH 7.47(7.43–7.50) 7.46(7.43–7.50) 7.48(7.43–7.52) 0.523
Potassium, mmol/L 132.7(129.08–135.55) 132.9(130–136) 132(126–135) 0.335
Procalcitonin, ug/L 0.30(0.12–0.92) 0.21(0.11–0.47) 0.68(0.13–1.75) 0.058
D-dimer, mg/L 0.87(0.46–1.85) 0.67(0.43–1.36) 1.29(0.54–3.00) 0.023
Prothrobin times, s 13.25(12.68–13.90) 13.70(12.80–14.20) 12.90(12.60–13.60) 0.107
PaO2/FiO2, mmHg 244.64(211.77–311.90) 236.36(169.70–263.64) 295.23(228.57–342.85) 0.003
Co-infections 36(72.00) 17(73.91) 19(70.37) 0.783
Use of corticosteroid 26(52.00) 17(73.91) 9(33.33) 0.003
Tracheal intubation 8(16.00) 8(34.78) 0(0.00) 0.001
Prognosis
In-hospital Mortality 2(4.00) 2(8.70) 0(0.00) 0.122
Hospital stays, day 10.00(8.00–14.25) 12.00(7.00–15.00) 9.00(8.00–13.00) 0.249
Hospitalization cost, RMB 18174.91(13343.24–25051.63) 22999.69(17502.80–29673.24) 15002.25(11840.42–20551.88) 0.003

Compared with patients who did not receive ICU care (n = 27), patients who required ICU care (n = 23) were more likely to report dyspnea (13[56.52%] vs 6[22.22%]; P = 0.002) and have lower transcutaneous oxygen saturation (SPO2%) [90% (IQR, 90–96), 95% (IQR, 93–96)]; P = 0.032). No differences were observed in temperature, respiratory rate, heart rate, and mean arterial pressure between the two groups. Patients admitted to the ICU had significantly greater platelet counts, aspartate aminotransferase, and D-dimer levels, but lower albumin and globulin concentrations (Table 1). Monocytes was lower in ICU patients than non-ICU patients though no differ significantly. ICU patients had a poorer median oxygenation index than non-ICU patients [236.36 (IQR, 169.70–263.64), 295.23 (IQR, 228.57–342.85)]. 26 patients (52%) used corticosteroid as part of the treatment of pneumonia. Of the 50 patients, 48 patients (96%) had been discharged, whereas two patients (4%) had passed away. Eight of the 23 patients admitted to the ICU required invasive ventilation, and two died both for severe pneumonia. The average time from hospitalization to discharge was ten days (IQR, 8–14.25). Furthermore, the cost of hospitalization in ICU patients was considerably higher than in non-ICU patients (P = 0.003) (Table 1).

Computed tomographic presentation

Initial chest CTs of 50 enrolled patients were available. The comparison of initial chest CT between the ICU and non-ICU patients was summarized in Table 2. Parenchymal abnormalities were distributed bilaterally in 38 patients, whereas unilateral involvement was shown in 12 patients (Fig 2). Air bronchogram was demonstrated in 33 patients, and pleural effusion was present in 26 patients. About 91.30% (21/23) of patients who required ICU care showed bilateral parenchymal abnormalities, while 62.96% of non-ICU patients showed bilateral parenchymal abnormalities. Among the CT findings, the presence of pleural effusion differed significantly (p = 0.023) between the two groups. Patients who were admitted to ICU showed a higher probability of pleural effusion. Other CT characteristics, such as ground-glass opacity, lymphadenopathy, air bronchogram, and adjacent pleura thickness, did not change substantially between ICU and non-ICU groups.

Table 2. Comparisons of initial chest CT findings among Adenovirus pneumonia patients.

CT characteristics All patients (n = 50, %) ICU care (n = 23, %) No ICU care (n = 27, %) P value
Lung involvement 0.021
Unilateral 12(34.00) 2(8.70) 10(37.04)
Bilateral 38(76.00) 21(91.30) 17(62.96)
Ground glass opacity 3(6.00) 2(8.70) 1(3.70) 0.463
Lymphadenopathy 6(12.00) 1(4.35) 5(18.52) 0.128
Air bronchogram 33(66.00) 16(69.57) 17(62.96) 0.627
Thickening of the adjacent pleura 3(6.00) 2(8.70) 1(3.70) 0.463
Pleural effusion 26(52.00) 16(69.57) 10(37.04) 0.023

Fig 2. Chest computed tomography (CT) finding in patients with Adenovirus pneumonia.

Fig 2

(a) Chest CT showed consolidation with interlobular septal thickening in the left lobe. (b) Initial chest CT in a patient who admitted ICU and received noninvasive mechanical ventilation showed consolidation with pleural effusion in the right lobe. (c) Chest CT showed consolidation with ground—glass opacity in left lobe and ground—glass opacity in right lobe. (d) Initial chest CT in a 35 years patient who admitted ICU and received high flow oxygen therapy showed consolidation with air bronchogram in the right lobe.

Coinfections pathogen detection and Lymphocyte subsets analysis

The comparison of coinfection results with bacteria, virus, and fungi between the two groups are shown in Table 3. Among the 50 Adenovirus pneumonia patients, 23 had a bacterial infection, 17 had a virus other than Adenovirus infection, and 5 had a fungi infection. The coinfection of virus pathogen was significantly more frequent in non-ICU patients than in ICU patients(P = 0.024). Of the 27 non-ICU patients, 6 (22.22%) patients were coinfected EBV infection, 3(11.11%) were co-infected IFV, 2(7.41%) were coinfected CMV. Likewise, EBV and IFV coinfection were also common in ICU patients. Although bacterial aetiologias were more commonly identified in patients who received ICU care than non-ICU patients, there was no statistical difference(P = 0.054). Regarding bacterial coinfections in ICU patients, Acinetobacter spp. (34.78%), Mycoplasma spp. (13.04%), and Mycobacterium tuberculosis were more frequent. While in non-ICU patients, Streptococcus spp. (7.41%), Klebsiella pneumonia (7.41%), Pseudomonas spp. (13.04%), and Mycobacterium tuberculosis were more frequent. Of the coinfected patients, 17 patients had two-or-more organisms infections, and 20 had one. Further, the coinfections of ICU patients were apt to report two-or-more pathogens coinfections than non-ICU patients (p = 0.003).

Table 3. The coinfections result of Adenovirus pneumonia patients.

Pathogenic types of coinfections All patients(n = 50, %) ICU care (n = 23, %) No ICU care (n = 27, %) P value
Bacteria 23(46.00) 14(60.87) 9(33.33) 0.054
Acinetobacter spp. 9(18.00) 8(34.78) 1(3.7) 0.005
Pseudomonas spp. 2(4.00) 2(8.70) 2(7.41) 0.808
Klebsiella pneumoniae 4(8.00) 2(8.70) 2(7.41) 0.868
Streptococcus spp. 4(8.00) 2(8.70) 2(7.41) 0.868
Mycoplasma pneumoniae 4(8.00) 3(13.04) 1(3.7) 0.230
Haemophilus influenzae 1(2.00) 0(0.00) 1(3.70) 0.356
Staphylococcus aureus 1(2.00) 1(4.35) 0(0.00) 0.279
Mycobacterium tuberculosis 5(10.00) 3(13.04) 2(7.41) 0.512
Virus 17(34.00) 4(17.39) 13(48.15) 0.024
Influenza A virus 5(10.00) 2(8.70) 3(11.11) 0.779
Influenza B virus 1(2.00) 0(0.00) 1(3.7) 0.356
Respiratory syncytial virus 1(2.00) 0(0.00) 1(3.7) 0.356
Epstein-Barr virus 8(16.00) 2(8.70) 6(22.22) 0.198
Rhinovirus 1(2.00) 0(0.00) 1(3.70) 0.356
Cytomegalovirus 2(4.00) 0(0.00) 2(7.41) 0.187
Fungi 5(10.00) 2(8.70) 3(11.11) 0.512
Aspergillus 2(4.00) 1(4.35) 1(3.70) 0.909
Candida albicans 3(6.00) 1(4.35) 2(7.41) 0.463
One organism 20(40.00) 7(30.43) 13(48.15) 0.526
Two or more organisms 17(34.00) 10(43.48) 7(25.93) 0.003

12 patients admitted to ICU performed peripheral blood subgroup of lymphocyte. Of the 12 ICU patients, 8 had coinfections, and 4 had no coinfections. Absolute numbers of CD3-CD16+CD56+(#), CD3-CD19+(#), CD3+CD19-(#), CD3+CD4+(#) and CD3+CD8+(#) were lower in ICU patients than normal reference value (Fig 3). The CD3+/CD4+ ratio was always within the normal range. The ratios of CD3+CD19-(%), CD3+CD4+(%), CD3+CD8+(%) and CD3-CD16+CD56+(%) were more decreased than normal reference values, while CD3-CD19+ (%) was increased. Compared to non-coinfection ICU patients, Coinfection ICU patients showed a statistically significantly higher decreased rate of CD3+CD19- (#).

Fig 3. Comparison of percentage of Peripheral blood lymphocyte subsets in ICU patients with Adenovirus pneumonia according to coinfections.

Fig 3

Percentage in Fig means percentage of patients tested value beyond normal value in all tested patients except CD3-CD19+ (%) (percentage of lower-than-normal value) and CD3+/CD4+ (percentage in the range of normal value reference). Normal value references:CD3-CD16+CD56+(#),150-1100M/L; CD3-CD19+(#),90-560M/L; CD3+CD19-(#),955-2860M/L; CD3+CD4+(#),550-1440M/L; CD3+CD8+(#),320-1250M/L; CD3+CD19-(%),56–84%; CD3+CD4+(%),27–51%; CD3+CD8+(%),15–44%; CD3-CD16+CD56+(%),7–40%; CD3-CD19+(%), 5–18%. * p = 0.046.

Predictive scores for severity in Adenovirus pneumonia

To assess the clinical predictive scores for ICU admission, a comparison of ICU patients and non-ICU patients stratified by PSI, CURB-65, and SMART-COP was shown in Table 4. The SMART-COP scores of the two groups were significantly different (p < 0.001). Of the 23 patients who required ICU care, 18(78.26%) were identified as a moderate risk, 4(17.39%) as high risk, and 1(4.34%) as very high risk. Moreover, all non-ICU patients were determined to be low or moderate risk (51.85% in low-risk vs. 48.15% in moderate-risk). However, PSI and CURB-65 underrated the severity of ICU admission in a significant number of inpatients with Adenovirus pneumonia (p = 0.101; p = 0.084, respectively). Of the 23 ICU patients, 17(74.91%) and 19(82.61%) were stratified to lower risk with I-III of PSI and 0–1 score of CURB-65. Given PaO2/FiO2 combined lymphocyte prediction for severe influenza pneumonia [15], we compared ROCs for ICU admission prediction in patients with Adenovirus pneumonia using four severity scores or indices (PSI, CURB-65, SMART-COP, and PaO2/FiO2) (Fig 4).

Table 4. Comparison of severity pneumonia scores admission in Adenovirus pneumonia patients.

Pneumonia Score All patients (n = 50, %) ICU care (n = 23, %) No ICU care (n = 27, %) P value
PSI score 0.101
Class I 21(42.00) 9(39.13) 13(48.15) 0.526
Class II 12(24.00) 3(14.04) 9(33.33) 0.927
Class III 9(18.00) 5(21.74) 4(14.81) 0.529
Class IV 7(14.00) 6(26.09) 1(3.70) 0.024
Class V 0(0.00) 0(0.00) 0(0.00) 1.000
CURB-65 score 0.084
0 point 38(76.00) 15(65.22) 23(85.19) 0.103
1 point 10(20.00) 6(26.09) 4(14.81) 0.326
2 point 1(2.00) 1(4.34) 0(0.00) 0.279
3–5 points 1(2.00) 1(4.34) 0(0.00) 0.279
SMART-COP < 0.001
Low risk(0-2points) 14(28.00) 0(0.00) 14(51.85) < 0.001
Moderate risk(3-4points) 31(62.00) 18(78.26) 13(48.15) 0.030
High risk(5-6points) 4(8.00) 4(17.39) 0(0.00) 0.025
Very high risk(≥7points) 1(2.00) 1(4.34) 0(0.00) 0.279

Fig 4. The ROCs for predicting ICU admission in inpatients with Adenovirus pneumonia.

Fig 4

AUC of SMART-COP was 0.873(95% confidence interval, 0.779–0.967,p < 0.001);AUC of PaO2/FiO2 combine lymphocyte was 0.742(95% confidence interval, 0.600–0.883, p = 0.004); AUC of PSI was 0.628(95% confidence interval, 0.467–0.789, p = 0.122); AUC of CURB-65 was 0.606(95% confidence interval, 0.446–0.766, p = 0.199).

Meanwhile, to further explore influence of coinfection on SMART-COP, we divided enrolled patients into two groups (coinfections and no coinfections) and found that the distribution of SAMRT-COP score in two groups was similar (Table 5) with no statistical difference (Fig 5).

Table 5. The distribution of SMART-COP score in coinfections and no coinfections.

SMART-COP ICU care (n = 23) No ICU care (n = 27)
Coinfections
Low risk (0–2 points) 0 12
Moderate risk (3–4 points) 13 7
High risk (5–6 points) 3 0
Very high risk (≥7 points) 1 0
No Coinfections
Low risk (0–2 points) 0 2
Moderate risk (3–4 points) 5 6
High risk (5–6 points) 1 0
Very high risk (≥7 points) 0 0

Fig 5. Comparison of SMART-COP score in coinfections and no coinfections.

Fig 5

Discussion

In this study, we described clinical characteristics of Adenovirus pneumonia in immunocompetent adult patients and assessed severity predicting scores for ICU admission. The results shown that initial SMART-COP sores are significantly superior to current CAP (community-acquired pneumonia) severity prediction patterns, such as PSI, CURB-65, and PaO2/FiO2, for predicting ICU hospitalization in immunocompetent patients with Adenovirus pneumonia. Additionally, we also found that coinfection pathogens distribution differed in ICU patients and non-ICU patients.

SMART-COP score was used to assess the requirement for intensive respiratory or vasopressor support in CAP, which was proposed by Patrick G. P. Charles et al. in 2008 [16]. In the emergency department, SMART-COP score accurately predicted ICU admission with CAP [17]. Unlike other prognosis scores (PSI and CURB-65) explored and aimed to predict 30-day mortality [18], SMART-COP score was mainly explored for clinicians to assess ICU admission severity accurately [19]. Other researchers also verified that risk scores (PSI and CURB-65) were excellent predictors for mortality but not for ICU admission in viral pneumonia [20]. It has been suggested that Adenovirus pneumonia in immunocompetent patients easily occurs in young and previously healthy human [21]. Hence, current severity scores such as PSI and CURB-65 were prone to underestimate the severity of ICU admission.

More importantly, SMART-COP score shows good ICU predictive value in viral pneumonia. In COVID-19, Felippe Lazar Neto et al. investigated 1363 patients and found the SMART-COP score had the best sensitivities for 7-day ICU admission with a negative predictive value beyond 75% [11]. Besides, Bin Cao et al. showed that SMART-COP scores were superior to other scores (CURB-65 and PSI) in predicting influenza virus in ICU admissions [15]. In this study, we demonstrated SMART-COP score is the best accurate prediction of ICU admission than other current prediction patterns and the validity of the SMART-COP score was not impacted by coinfections. As a well-known severe score, SMART-COP score has been widely used in clinical practice for decades, which may extend to viral pneumonia in immunocompetent patients.

In additionally, Bin Cao et al. study also confirmed that PaO2/FiO2 combined lymphocyte count was simple and dependent on predicting viral pneumonia ICU admissions [15]. Disappointingly, in our study, lymphocyte count combined with PaO2/FiO2 was less predictive than SMART-COP score. One possible reason may be due to the combination pattern of lymphocyte count and PaO2/FiO2 underestimating ICU admission for lack of variables of chest radiology, which was one of the factors suggestive of progression to ARDS in Adenovirus pneumonia [22].

Coinfection in CAP was usual and had an adverse impact on the severity of the pneumonia [23]. In our study, 72% of patients were coinfected with other pathogens. Previous studies showed that patients with Adenovirus pneumonia coinfected with Mycoplasma pneumoniae aggravate the severity of the disease in children [24–26]. According to our research, ICU patients and non-ICU patients had different coinfections pathogen patterns. Compared with those who did not need ICU care, patients requiring ICU admission had a higher coinfections rate of two or more organisms, mostly with bacterial infections. Damage and dysfunction of the epithelial barrier and imbalance of immune function have been suggested as potential causes of viral coinfection with other pathogens [27, 28].

To determine the effects of Adenovirus pneumonia on the body’s immune system, patients admitted to ICU performed peripheral blood subgroup of lymphocyte. According to the presence of coinfection, 12 patients were divided into a coinfection group and a non-coinfection group. We analyzed the peripheral blood lymphocyte subsets of critically ill patients and found that the counts of T cells, B cells, and NK cells were all decreased. Accordingly, the levels of CD3+ and CD4+ decreased, and the levels of CD19+ shifted according to the ratio of peripheral blood lymphocytes. We believe that this may be related to the impaired immune function of cells, the impaired function of T cells dependent on B lymphocytes, and the insufficiency of B lymphocytes’ antibody production function. Immune responses and hypercytokinemia have been reported to be associated with disease severity in patients with adenovirus infection [29].

Interestingly, coinfected patients requiring intensive care had a lower rate of decline in peripheral blood T-cell counts than non-coinfected intensive care patients. Previous research has demonstrated that a robust inflammatory response can enhance the death and malfunction of T cells, and that T cell depletion is associated with the mortality of Adenovirus-infected individuals [5, 30]. Whether peripheral blood T cells count plays a protective role in coinfections of Adenovirus infection remains to be explored. In brief, hospitalized patients of Adenovirus pneumonia presenting with decreased levels of peripheral blood lymphocytes requires careful assessment of the risks of coinfections.

Several limitations of our investigation should be noted. First, although we tried our best to screen all adenovirus inpatients in our hospital, there were only 50 patients eligible for the study. The conclusion extended to wide use and still needs more large-scale study. Second, as a regional respiratory center with 14 beds and 200 ICU admissions per year, our hospital undertakes most medical behavior of severe adenovirus pneumonia in Xiangtan, which may cause a selection bias of non-severe patients on account of limited medical resources. Third, our study only assessed lymphocyte subsets in critically ill patients due to a retrospective study, which led to the inability to learn more about the immune function of non-ICU hospitalized patients with Adenovirus pneumonia.

Conclusions

In conclusion, Adenovirus pneumonia is not rare in immunocompetent adult patients who are prone to coinfect with other etiological infections. Our data suggest that coinfections do not affect the reliability of the SMART-COP score. Tthe initial SMART-COP score is a valid predictive assessment of ICU admission in non-immunocompromised adult hospitalized patients with adenovirus pneumonia.

Supporting information

S1 Checklist. STROBE statement—checklist of items that should be included in reports of observational studies.

(PDF)

Acknowledgments

All work was performed at the Xiangtan Central Hospital. The authors thanks Qing Wu in the department of Pulmonary and Critical Care for help with data collection. We thank all the patients and physicians involved in the current study.

List of abbreviations

ICU

intensive care unit

PSI

pneumonia severity index

EBV

Epstein-Barr virus

IQR

interquartile range

AUCs

area under the curves

ROCs

receiver operating characteristic curves

OR

odds ratio

CI

confidence interval

NGS

next-generation sequencing method

PCR

Polymerase Chain Reaction

CT

computed tomography

RSV

respiratory syncytial virus

IFV

influenza virus types A and B

PIV

parainfluenza virus

CMV

cytomegalovirus

CoV

coronavirus

HMPV

human metapneumovirus

Data Availability

All relevant data are within the paper and its Supporting Information files.

Funding Statement

Ming Yan Jiang is supported by the Medical Scientific research project in Xiangtan city (grant number 2020xtyx-6). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Muhammad Adrish

6 Oct 2022

PONE-D-22-17138Clinical characteristics and severity prediction of Adenovirus pneumonia in immunocompetent adultsPLOS ONE

Dear Dr. Jiang,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Reviewer #2: Yes

Reviewer #3: Partly

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Reviewer #2: Yes

Reviewer #3: Yes

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Reviewer #1: thank you for the opportunity to review this manuscript

after reading it there are several doubts and questions that arise.

1) a study period comprising the first year of the covid pandemic was chosen: are the periods before covid and during covid comparable? was the hospital management similar? were the diagnostic studies performed the same? were there no changes that would make the two time periods not comparable?

2)The use of the term "immunocompetent adults" is strongly emphasized, considering that there are diabetics (whose level of metabolic control is unknown) and also patients with chronic obstructive pulmonary disease (COP).

in one of the tables it is mentioned that a significant number of patients have use of sterioids (26 patients), it is not clear if they were used as part of the treatment of pneumonia or were drugs used prior to admission.

3)also in the definition of immunocompetent, was HIV co-infection studied on admission of the patients? no mention is made of whether this was ruled out.

4)The high rate of infection with agents that are not part of the usual community pneumonias is striking. 34% of infection with Acinetobacter spp, also Tuberculosis, even fungal pneumonias (aspergillus which exists almost exclusively in immunocompromised patients). How can this rate of infection be explained?

Reviewer #2: Main points

Abstract

Lines 40-42 Adding all the co-infections (by bacterial, viruses and fungi), could be useful to find differences between ICU and non-ICU patients? It would be interesting to assess.

Methods

Lines 78-81. Include some characteristic of the hospital, such as the total number of hospital admissions per year, number of beds, and ICU.

In line 264 they wrote it is a regional respiratory center, put this also in the methods.

Lines 83-84. Do NGS or PCR are standardized to perform in all adults who are admitted because a pneumonia process? Please clarify.

lines 109-117. Also, searching for other pathogens, antibodies, bacterial cultures, are performed in all patients with low respiratory infections?

Results

Lines 133-134:…23 (46%) were admitted to or moved to the ICU. It should be interesting to know the number of patients who were admitted directly to the ICU, and how many moved later, including the mean time to admission to the ICU.

Lines 144-146. They describe the main results in the laboratory parameters. Should be interesting to comment something about monocytes, because included monocytopenia as a potential predictor in the background (line 59).

Line 148. The two patients who died the cause was directly related with the pneumonia? Another co-infection? septic shock? Please clarify.

Linea 150-151. The cost of hospitalization in ICU were higher. Including costs, and defining how they had calculated, must be included in the methods.

Line 169-170. The abbreviation next to the full name for Epstein-Barr must be first (exchange line 170 with 169). The common abbreviation is EBV, not EB, lines 170 and 277. EBV, should be included in the methods in the part of pathogen detection (lines 109-112)

Line. 170. Do IFA should be IFV? Or what does IFA mean?

Lines 173-175 and table 3. Add the whole gender and specie: Acinetobacter spp, Mycoplasma spp or pneumoniae? Streptococcus spp, Pseudomonas aeruginosa or spp?

Lines 179-187. The searching of lymphocyte subgroups should be added in the methods.

Figure 2 legend is very difficult to read. Describe also, the meaning of the different colors used.

Minor

I suggest the title should establish the severity prediction will be based in a previous score used for pneumonia patients. So maybe could be: “Clinical characteristics and severity prediction score of…….”

Introduction:

Lines 52-53: … with inadequate immunity, such as newborns and organ transplant recipients”. These infections are very common in hematopoietic stem cell transplants. I suggest to add these too.

Methods

line 113. Describe the abbreviations for IFA, or it should be IFV?

Results

Line 134. Approximately 89.96% (20/23) of patients who required ICU…. Approximately? Consider to eliminate the word

Eliminate the two decimals (.00) and leave the whole number

Tables

IN the first column, you can leave the number, example (n=23, %). And eliminate all the symbol % in all the rest of the lines.

Typo

Line 235. Should be pathogens, nor parthenogens

Reviewer #3: Authors evaluated the applicability of severity score in predicting intensive care unit admission of Adenovirus pneumonia such as PSI, CURB-65, SMART-COP, and PaO2/FiO2. The study brought out few important data. The manuscript may be accepted with following few corrections in manuscript:

1. Abstract should have the sample size used for the study.

2. End of the manuscript (line 262) mentioned in there that 56 patients, this needs to be clarified in the methodological section appropriately.

3. Methodological details regarding RT-PCR or NGS should be given - at least some minimal details need to be given.

4. When the manuscript focuses immunocompetent individuals, including some diseased/clinical conditions such as Diabetes and Pregnancy may not be appropriate.

5. Table 3: All the bacteria terms should be initialized.

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Reviewer #2: No

Reviewer #3: Yes: Pachamuthu Balakrishnan

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Decision Letter 1

Muhammad Adrish

16 Nov 2022

PONE-D-22-17138R1Clinical characteristics and severity prediction score of Adenovirus pneumonia in immunocompetent adultsPLOS ONE

Dear Dr. Jiang,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by December 15, 2022. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

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  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

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If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Muhammad Adrish, MD, MBA, FCCP, FCCM

Academic Editor

PLOS ONE

Additional Editor Comments:

Please review comments made by the reviewers and provide your response in the revised manuscript.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

Reviewer #2: Yes

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3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: (No Response)

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5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Given the high rate of co-infection with other agents, it is very difficult to assert that a score can predict the severity of adenovirus pneumonia when in reality it is mostly co-infection with multiple agents.

In the conclusions it is stated: "In conclusion, adenovirus pneumonia is not uncommon in immunocompetent adult patients who are prone to coinfection with multiple agents."

This part of the conclusion, in my opinion, if it is possible to extract from the study done.

However, the second part of the conclusion: "Our data suggest that the initial SMART-COP score is a valid predictive assessment of ICU admission in adult non-immunocompromised patients hospitalized with adenovirus pneumonia" does not seem to me to be drawn from the reported study.

Reviewer #2: All the suggestions were made.

It is only important to correct the names of the bacteria: if it has a gender and specie, it is no longer necessary to include spp. (eg. Klebsiella pneumoniae). If it is only the genus without species, must include spp (species), example: Acinetobacter spp. Run lines 204, 205, table 3, and everything that corresponds

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7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

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[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Decision Letter 2

Muhammad Adrish

19 Dec 2022

PONE-D-22-17138R2Clinical characteristics and severity prediction score of Adenovirus pneumonia in immunocompetent adultsPLOS ONE

Dear Dr. Jiang,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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ACADEMIC EDITOR: Reviewer has one final comment. Please address it at your earliest convenience" in my opinion the separate results for co-infected versus non co-infected should be included and highlight that there was no significant difference, implying that co-infections do not affect the validity of the SMART-COP score."

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Please submit your revised manuscript by 01-15-2023. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Muhammad Adrish, MD, MBA, FCCP, FCCM

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

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5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: in my opinion the separate results for co-infected versus non co-infected should be included and highlight that there was no significant difference, implying that co-infections do not affect the validity of the SMART-COP score.

Reviewer #2: The authors made the changes according to the recommendations made in the previous version. I consider it can be published.

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7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

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[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Decision Letter 3

Muhammad Adrish

27 Jan 2023

Clinical characteristics and severity prediction score of Adenovirus pneumonia in immunocompetent adults

PONE-D-22-17138R3

Dear Dr. Jiang,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

"Please add  IRB/ethics submission and approval in the methodology"

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Muhammad Adrish, MD, MBA, FCCP, FCCM

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: the requested corrections have been made

the only concern is that in the latest version the mention of the ethics committee that evaluated the project and the informed consent waiver was removed,

I am not sure if I did not find the file, but the IRB/ethics submission and approval must appear in the methodology.

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7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

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Acceptance letter

Muhammad Adrish

7 Feb 2023

PONE-D-22-17138R3

Clinical characteristics and severity prediction score of Adenovirus pneumonia in immunocompetent adult

Dear Dr. Jiang:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Muhammad Adrish

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Checklist. STROBE statement—checklist of items that should be included in reports of observational studies.

    (PDF)

    Attachment

    Submitted filename: PONE-D-17138 Pneumonia adenovirus immunocompetern sep 2022.docx

    Attachment

    Submitted filename: renamed_9d910.docx

    Attachment

    Submitted filename: renamed_77903.docx

    Attachment

    Submitted filename: renamed_95dea.docx

    Data Availability Statement

    All relevant data are within the paper and its Supporting Information files.


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