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. 2023 Feb 22;18(2):e0269762. doi: 10.1371/journal.pone.0269762

Diagnostic delay of sarcoidosis: Protocol for an integrated systematic review

Tergel Namsrai 1, Christine Phillips 2, Jane Desborough 1,*, Dianne Gregory 3,4, Elaine Kelly 3,4, Matthew Cook 4, Anne Parkinson 1
Editor: Muhammad Shahzad Aslam5
PMCID: PMC9946231  PMID: 36812191

Abstract

Introduction

Sarcoidosis is a rare systemic inflammatory granulomatous disease of unknown cause. It can manifest in any organ. The incidence of sarcoidosis varies across countries, and by ethnicity and gender. Delays in the diagnosis of sarcoidosis can lead to extension of the disease and organ impairment. Diagnosis delay is attributed in part to the lack of a single diagnostic test or unified commonly used diagnostic criteria, and to the diversity of disease manifestations and symptom load. There is a paucity of evidence examining the determinants of diagnostic delay in sarcoidosis and the experiences of people with sarcoidosis related to delayed diagnosis. We aim to systematically review available evidence about diagnostic delay in sarcoidosis to elucidate the factors associated with diagnostic delay for this disease in different contexts and settings, and the consequences for people with sarcoidosis.

Methods and analysis

A systematic search of the literature will be conducted using PubMed/Medline, Scopus, and ProQuest databases, and sources of grey literature, up to 25th of May 2022, with no limitations on publication date. We will include all study types (qualitative, quantitative, and mixed methods) except review articles, examining diagnostic delay, incorrect diagnosis, missed diagnosis or slow diagnosis of all types of sarcoidosis across all age groups. We will also examine evidence of patients’ experiences associated with diagnostic delay. Only studies in English, German and Indonesian will be included. The outcomes we examine will be diagnostic delay time, patients’ experiences, and factors associated with diagnostic delay in sarcoidosis. Two people will independently screen the titles and abstracts of search results, and then the remaining full-text documents against the inclusion criteria. Disagreements will be resolved with a third reviewer until consensus is reached. Selected studies will be appraised using the Mixed Methods Appraisal Tool (MMAT). A meta-analysis and subgroup analyses of quantitative data will be conducted. Meta-aggregation methods will be used to analyse qualitative data. If there is insufficient data for these analyses, a narrative synthesis will be conducted.

Discussion

This review will provide systematic and integrated evidence on the diagnostic delay, associated factors, and experiences of diagnosis delay among people with all types of sarcoidosis. This knowledge may shed light on ways to improve diagnosis delays in diagnosis across different subpopulations, and with different disease presentations.

Ethics and dissemination

Ethical approval will not be required as no human recruitment or participation will be involved. Findings of the study will be disseminated through publications in peer-reviewed journals, conferences, and symposia.

Trial registration

PROSPERO Registration number: CRD42022307236. URL of the PROSPERO registration: https://www.crd.york.ac.uk/PROSPEROFILES/307236_PROTOCOL_20220127.pdf.

Background

Sarcoidosis is a rare systemic inflammatory granulomatous disease. The incidence and prevalence of sarcoidosis vary across countries, and by ethnicity and gender. In studies using national datasets or large cohorts, the reported incidence is highest in northern Europe at 11.5 per 100,000 per year in Sweden [1] and 11.3–14.8 per 100,000 per year in Denmark [2]. Lower incidences have been reported in Asian countries [35]. Intra-country differences attributed to race are reported in the USA where the incidence among African Americans is higher than that of other Americans [6]. In Canada, migrants accounted for 10% of cases, with South East Asian migrants disproportionately represented [7]. Higher incidence rates among women have been reported in some studies, [6, 8, 9] but not in others [10]. The pattern of disease may differ for women, and they may be diagnosed at a later age [1, 11, 12].

Sarcoidosis is a disease of unknown cause, which can manifest in any organ including heart, skin, liver, joints, nervous system and eye, but it most commonly affects the lungs [9]. Its symptoms reflect the range of organs involved, from symptoms attributable to its more common pulmonary manifestation to unusual presentations involving other organs and subtle symptoms such as fatigue and pain [1316]. Sarcoidosis can be asymptomatic, and be discovered incidentally; in one study, 13.6% of cases of pulmonary sarcoidosis were asymptomatic [17]. There is no single diagnostic test for sarcoidosis, nor a unified, commonly used set of diagnostic criteria. Diagnosis of sarcoidosis relies on clinical manifestations along with radiological or histological evidence and exclusion of possible alternative diagnoses [18].

The reported delay of onset of sarcoidosis ranges from six months to nine years depending on the organ involvement [19, 20]. In one study in the USA, only 15.3% of cases were diagnosed at the first visit [21]. Delays in diagnosis of sarcoidosis can lead to extension of the disease, organ impairment and can be accompanied by physical suffering and exhaustion among patients.

There have been no systematic reviews of studies about determinants of delay, incorporating qualitative and quantitative research to incorporate people’s experiences of the processes associated with diagnostic delay. We aim to systematically review the evidence about diagnostic delay in sarcoidosis to elucidate the factors associated with diagnostic delay for this disease in different contexts and settings, and the consequences of this delay for people with sarcoidosis. More detailed information about the factors associated with delay may help throw light on points of intervention, and strategies to ensure earlier diagnosis.

Research objective

The aim of this integrated systematic review is to review the evidence regarding diagnostic delay in sarcoidosis. To this end, our aim is to answer two key research questions:

RQ1. What are the factors associated with diagnostic delay of sarcoidosis?

RQ2. What are patients’ experience of the impact of diagnostic delay of sarcoidosis?

Methods and analysis

Protocol development

This study protocol has been developed in accordance with the Preferred Reporting Items for Systematic Review and Meta-Analysis Protocols (PRISMA-P) and the Cochrane Handbook for Systematic Reviews [22, 23].

Search strategy

The search strategy was developed to ensure reproducibility and increase transparency following the PRISMA-P checklist [22]. Research questions and search terms were developed using the PICOS tool (Population/Intervention/Comparison/Outcomes/Study Design) to ensure reliability and homogeneity of search results [24]. The study is registered with PROSPERO (CRD42022289830). A systematic search of peer reviewed literature will be conducted using PubMed/Medline, Scopus, and ProQuest databases, and searches of the grey literature will include Open Access Theses and Dissertations (https://oatd.org/), ProQuest Thesis and Dissertations and the National Library of Australia. Reference lists of selected studies and review articles will also be searched.

Search term

Search terms were developed in collaboration with research team members (TN, AP, JD, CP), and combined using Boolean operators “AND” and “OR”. A preliminary exploratory search on Pubmed/Medline was conducted on 15th October 2021 (Table 1) to inform the final search strategy and determine outcomes. The preliminary search conducted during the development of the search string on Pubmed/Medline identified 162 relevant titles (Table 1). This search strategy was updated and peer reviewed (TN, AP) using the PRESS checklist [11]. The final search terms will include sarcoidosis AND ("delay in diagnosis" OR "diagnostic delay" OR "misdiagnosis" OR "time to diagnosis" OR "incorrect diagnosis" OR "missed diagnosis" OR "delayed diagnosis") without restrictions on study type, date, and language.

Table 1. Search string conducted on Pubmed/Medline.

Search number Query Search Details Results
1 sarcoidosis [Title/Abstract] sarcoidosis [Title/Abstract] 26,719 titles
2 delay in diagnosis [Title/Abstract] delay in diagnosis [Title/Abstract] 5,899 titles
3 delayed diagnosis [Title/Abstract] delayed diagnosis [Title/Abstract] 8,461 titles
4 diagnostic delay [Title/Abstract] diagnostic delay [Title/Abstract] 3,134 titles
5 time to diagnosis [Title/Abstract] time to diagnosis [Title/Abstract] 2,601 titles
6 misdiagnosis [Title/Abstract] misdiagnosis [Title/Abstract] 16,390 titles
7 missed diagnosis [Title/Abstract] missed diagnosis [Title/Abstract] 2,338 titles
8 incorrect diagnosis [Title/Abstract] incorrect diagnosis [Title/Abstract] 1,290 titles
9 #2 OR #3 OR #4 OR #5 OR #6 OR #7 OR #8 delay in diagnosis [Title/Abstract] OR "delayed diagnosis"[Title/Abstract] OR "diagnostic delay"[Title/Abstract] OR "time to diagnosis"[Title/Abstract] OR "misdiagnosis"[Title/Abstract] OR "missed diagnosis"[Title/Abstract] OR "incorrect diagnosis"[Title/Abstract] 37,630 titles
10 #1 AND #9 sarcoidosis [Title/Abstract] AND ("delay in diagnosis"[Title/Abstract] OR "delayed diagnosis"[Title/Abstract] OR "diagnostic delay"[Title/Abstract] OR "time to diagnosis"[Title/Abstract] OR "misdiagnosis"[Title/Abstract] OR "missed diagnosis"[Title/Abstract] OR "incorrect diagnosis"[Title/Abstract]) 162 titles

Study selection (inclusion and exclusion criteria)

The eligibility of the studies identified through the literature search will be determined according to the pre-developed PICOS eligibility criteria outlined in Table 2.

Table 2. Inclusion and exclusion criteria.

PICOS Inclusion criteria Exclusion criteria
Population Studies examining people with sarcoidosis of all ages Animal studies
Intervention/Exposure Studies examining delayed, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis -
Comparison Not applicable -
Outcome Primary outcome: diagnostic delay. -
Secondary outcomes:
i) factors of diagnostic delay
ii) people with sarcoidosis’ experiences of diagnostic delay
Study design All study designs Review articles
Language English, German, Indonesian Articles except English, German and Indonesian
Setting No restriction Clinical trials, randomized trials not reporting on delayed, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis.
Timing No restriction -

Inclusion criteria

Population. Studies examining people with all types of sarcoidosis and of all ages.

Intervention/Exposure. Studies about delayed diagnosis, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis.

Comparison. Given the nature of the study there will be no comparison group.

Outcomes. Studies that have measures on diagnostic delay, factors of diagnostic delay, and people with sarcoidosis’ experiences of diagnostic delay.

Study design. Qualitative, quantitative and mixed methods will be included if they meet the PICOS eligibility criteria.

Other. No setting or publication date limitations will be applied. Only studies in English, German and Indonesian will be included.

Exclusion criteria

Studies on animals, review articles, clinical trials, randomized trials not reporting on delayed diagnosis, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis.

Screening

Studies identified through the systematic search will undergo title and abstract screening followed by full text screening for those remaining.

Two review authors (TN and AP) will independently screen titles and abstracts, and full texts against the pre-developed inclusion criteria. Any conflicts will be discussed and resolved by consensus with a third reviewer (JD). Exclusion rationales will be recorded.

Data management

To ensure an independent review and screening process of the studies identified through the literature search we will use an internet-based software, Covidence, that facilitates collaboration between reviewers while maintaining independence [25]. All search results will be imported to Covidence, and research team members will screen individually while being blinded to the choices made by other members. Any conflicts will be resolved through discussion and consensus following each screening process.

Data extraction/Data collection

Following completion of the study selection and screening, data extraction will be conducted in four stages: 1) development of a data extraction tool, 2) peer-review of the data extraction tool, 3) piloting of the data extraction tool, and 4) final data extraction. The data extraction tool will be designed by TN based on discussions with the research team and then reviewed by the team. This will be followed by a piloting stage where two reviewers (TN and AP) will independently extract data from the same five studies and compare their results to establish consensus and validity of the data extraction tool. Final data extraction will be conducted by an individual reviewer (TN).

Data items

The following data items will be extracted from the included studies:

  • 1. Identification of the study

This will include name of the journal, authors, publication year, short citation, research center/university/hospital/organisation, conflict of interest, and funding/sponsorship.

  • 2. Methods

This will include study aim, study design, diagnostic criteria used, participant demographics (mean age, sex, number of participants, ethnicity, country), recruitment process, inclusion, exclusion criteria, and statistical analysis.

  • 3. Main findings

This will include diagnosis (sarcoidosis location), type of diagnostic delay (doctor’s delay or patient’s delay), diagnostic delay in months (standard deviation, standard error, confidence interval of the diagnostic delay) factors of delay (estimates, odds ratio, relative risk, standard deviations, standard errors and confidence intervals), main symptoms, patients’ experiences, and other relevant outcomes.

Methodological evaluation/quality appraisal

The Mixed Methods Appraisal Tool (MMAT), will be used to appraise the quality of included studies (quantitative, qualitative and mixed methods) [26]. If the selected studies are only quantitative, an appropriate adapted version of Newcastle-Ottawa scale will be used depending on the study types included. The chosen quality appraisal tool will be piloted by two independent review authors (TN and AP), on a randomly selected five samples with any conflicts resolved by a third reviewer following discussion (JD). An independent reviewer (TN) will continue quality appraisal on the remaining studies.

Assessment of risk of bias

The risk of bias of the included studies will be assessed through examining data presented as a funnel plot, a scatter plot of the effect sizes against the study sample [27]. Visual inspection of asymmetry of the funnel plot will initially be conducted, with consideration of causes, including heterogeneity, reporting bias, publication bias and chance. In cases of funnel plot asymmetry, when there are more than ten studies included in the meta-analysis, further tests for funnel plot asymmetry will be used to assess the cause of bias [28].

Data synthesis

The extracted data items will be exported to Excel (spreadsheet software) [20]. The data synthesis will be conducted using R programming running under R studio version 4.2.1. The data synthesis process will comprise four stages: 1) data checking and cleaning, 2) data conversion, 3) descriptive statistics, 4) data examination for eligibility for inclusion in meta-analysis. In the data checking and cleaning stage, all extracted data items will be checked for misspelling and missing data will be double checked to ensure any data is not mistakenly left out. This will be followed by the conversion of outcomes to unified units (i.e., delay in diagnosis will be converted to months). In this stage, all data items will be labelled (i.e., delay in diagnosis will be labelled as a numerical value). This will be followed by summarising descriptive statistics of the included studies which will be used to examine the possibility of conducting a meta-analysis.

Narrative synthesis and meta-analysis

A systematic narrative synthesis will be undertaken to explore the findings of included studies in relation to time from symptom onset to diagnosis, and people’s experiences related to delayed diagnosis in line with guidance from the Centre for Reviews and Dissemination [29].

A meta-analysis will also be conducted if extracted quantitative data are homogenous, using a random-effects model. The main analysis will be pooled diagnostic delay in each type of sarcoidosis in conjunction with subgroup analyses (i.e., location of sarcoidosis, symptom presentation, ethnic background, health service utilisation, year of publication, country). Meta-analysis including pooling of diagnostic delay and subgroup analysis will be conducted using R studio version 4.2.1 using “meta” package. Extracted qualitative data will be meta-synthesised using meta-aggregation. Similarly, processed data (findings) from qualitative studies will be extracted and aggregated into a single set of categories, which will then be further aggregated and synthesised into a set of statements that may be useful to inform clinical practice.

Quality of evidence

The quality/certainty of evidence for all quantitative outcomes included in a meta-analysis will be judged using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) working group methodology [30]. The domains of risk of bias, consistency of effect, imprecision, indirectness, and publication bias will be used to assess the certainty of the body of evidence, which will be reported in four levels: high, moderate, low, and very low.

Discussion

In this systematic review protocol, a detailed plan of all steps of the review including protocol development, search strategy, study selection, data extraction, quality assessment, and data synthesis has been described to ensure the production of unbiased evidence regarding the diagnostic delay of sarcoidosis, its factors, and the experiences of diagnostic delay among people with sarcoidosis. Knowledge gained from this review may throw light on ways to improve delays in diagnosis across different subpopulations, and with different disease presentations.

Strengths and limitations

The main strength of this systematic review will be the inclusion of all study types (qualitative, quantitative, and mixed methods) to integrate and analyse the current literature about diagnostic delay, its determinants and consequences, including people’s experiences of delayed diagnosis in all types of sarcoidosis. A potential limitation of the study will be insufficient studies with data on ethnic or gender differences in diagnostic delay. While there will be sufficient studies exploring pulmonary sarcoidosis, there may be insufficient studies for some rarer types to identify factors associated with delays in diagnosing sarcoidosis.

Amendments

If the protocol is amended prior to commencing the study, these amendments (date, explanation, and rationale) will be described in the final protocol. The record will be in tabular format as recommended by the Cochrane Collaboration [23].

Supporting information

S1 File. Diagnostic delay of sarcoidosis: A protocol of an integrated systematic review.

(DOCX)

Data Availability

No datasets were generated or analysed during the current study. All relevant data from this study will be made available upon study completion.

Funding Statement

This review is part of the “Missed opportunities in clinical practice: Tools to enhance healthcare providers’ awareness and diagnosis of rare diseases in Australia” project funded by the Commonwealth represented by Department of Health Australia (Grant ID 4-G5ZN0T7). The funders had and will have no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.

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Decision Letter 0

Consolato M Sergi

5 Aug 2022

PONE-D-22-15192Diagnostic delay of sarcoidosis: protocol for an integrated systematic reviewPLOS ONE

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Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Partly

Reviewer #2: Yes

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2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: No

Reviewer #2: Yes

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Reviewer #1: No

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Thank you for asking me to review this protocol.

The intention is laudable in that the diagnosis of sarcoidosis is often delayed, in part due to the fact that it is uncommon, but also because the diseases manifests in multiple ways and in different organs. The systematic review does not indicate how many articles they expect to identify nor are there many in the literature to date. This reviewer finds the publication of protocols of this nature somewhat unhelpful and would prefer to see the final article as publishes in the Cochrane database or elsewhere, rather than piecemeal.

The main issues are:

The appears to be the same protocol already available on the internet, raising the issue of duplicate publication.

https://www.medrxiv.org/content/10.1101/2022.05.30.22275771v1

https://www.crd.york.ac.uk/PROSPEROFILES/307236_PROTOCOL_20220127.pdf

Is this intended to be a Cochrane review? If so, it should be listed as such and the title on their website.

Specific comments:

The choice of languages for the available articles is curious, but presumably reflects the skills of the authors- it would be useful to include other languages particularly Japanese which has a large body of literature on the topic of sarcoidosis.

The introduction is somewhat lacking in balance: it is not a rare disease (10-40 in 100,000). Seizures not are a common presentation- ophthalmological, respiratory and rheumatological symptoms are much more common.

Reviewer #2: This is expected to be a good study at conception with valid research questions and expected outcomes.

Authors have expressed their concerns on the limited number of available studies that deal with diagnostic delay in sarcoidosis. Has there been a preliminary literature search that can assure authors of being able to get reasonable number of manuscripts for review?

How do the authors plan to do statistical analysis, have they got the skill or this will be sourced out?

Assuming there are enough manuscript from literature search, I believe this study will be helpful to both patients as well as clinicians.

recommendations will be helpful in looking at causes and consequences of delay in diagnosis and way forward.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: Segun Samson Odetola

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2023 Feb 22;18(2):e0269762. doi: 10.1371/journal.pone.0269762.r002

Author response to Decision Letter 0


10 Aug 2022

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see:

Response: We have provided a reference for the preprint as follows:

On page 8 line 120:

“The preliminary search conducted during the development of the search string on PUBMED/MEDLINE identified 162 relevant titles (Table 1).”

Attachment

Submitted filename: Response to reviewers.docx

Decision Letter 1

Muhammad Shahzad Aslam

14 Sep 2022

PONE-D-22-15192R1Diagnostic delay of sarcoidosis: protocol for an integrated systematic reviewPLOS ONE

Dear Dr. Namsrai,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please specify your study and mentioned details eligibility criteria.

Please provide screening methodology, selection methodology

Please provide exclusion criteria with details

Please provide possible limitation in the study.

The current information given were incomplete. Please provide background of study, problem statement and rational of the study.

Please provide statistical signification of the sarcoidosis disease? such as prevalence rate all around the world.

Please provide data management tools.

Please provide data collection process in detail 

Please provide data items, data synthesis methodology. All information must written in detail under separate heading.

Please give PICO in detail under each heading.

Please provide implication of study protocol and what will be benefit of this protocol.

Include some more tool to assess and compare bias in different studies. The current methodology is insufficient.

Please submit your revised manuscript by Oct 29 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Muhammad Shahzad Aslam, Ph.D.,M.Phil., Pharm-D

Academic Editor

PLOS ONE

Additional Editor Comments:

Please specify your study and mentioned details eligibility criteria.

Please provide screening methodology, selection methodology

Please provide exclusion criteria with details

Please provide possible limitation in the study.

The current information given were incomplete. Please provide background of study, problem statement and rational of the study.

Please provide statistical signification of the sarcoidosis disease? such as prevalence rate all around the world.

Please provide data management tools.

Please provide data collection process in detail

Please provide data items, data synthesis methodology. All information must written in detail under separate heading.

Please give PICO in detail under each heading.

Please provide implication of study protocol and what will be benefit of this protocol.

Include some more tool to assess and compare bias in different studies. The current methodology is insufficient.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Partly

Reviewer #2: Yes

Reviewer #3: Yes

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Descriptions of methods and materials in the protocol should be reported in sufficient detail for another researcher to reproduce all experiments and analyses. The protocol should describe the appropriate controls, sample size calculations, and replication needed to ensure that the data are robust and reproducible.

Reviewer #1: No

Reviewer #2: Yes

Reviewer #3: Yes

**********

4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: No

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors have responded to the queries raised. This reviewer would prefer to see the main findings rather than just the protocol.

Reviewer #2: Previous comments have been sufficiently addressed.

The outcome of this study is promising and will most likely fulfil objectives of the study and contributes to the body of knowledge in this field.

Reviewer #3: Thank you for the opportunity to review this protocol. The protocol is significantly improved from the previous version. I have only have a few comments.

Lines 132-135: How will the authors examine patients’ experiences associated with diagnostic delays? This is not described in detail. Will there be a survey? Will evidence be based on published literature or follow up with respective authors? In the event that there are not enough studies detailing patients’ experiences, how do the authors plan to make up for that?

Since there are no limitations on publication dates, it would be interesting to see if the study shows a trend of stagnancy or improvement in diagnostic delay over the years.

I totally agree with reviewer 1 about publishing the protocol as part of a complete systematic review and meta-analysis manuscript because that will be more informative and helpful.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: Dr Segun Samson Odetola

Reviewer #3: Yes: Shakirat Adetunji

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2023 Feb 22;18(2):e0269762. doi: 10.1371/journal.pone.0269762.r004

Author response to Decision Letter 1


18 Oct 2022

Editor's comments:

1. Comment 1

Please specify your study and mentioned details eligibility criteria.

Response:

Thank you for your comment. A separate section on study selection (inclusion and exclusion criteria) has been added to provide more detail on the eligibility of the studies identified through the systematic search of the literature.

Edit in the manuscript:

Study selection (inclusion and exclusion criteria)

The eligibility of the studies identified through the literature search will be determined according to the pre-developed PICOS eligibility criteria outlined in Table 2.

Inclusion criteria

Population

Studies examining people with all types of sarcoidosis and of all ages.

Intervention/Exposure

Studies about delayed diagnosis, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis.

Comparison

Given the nature of the study there will be no comparison group.

Outcomes

Studies that have measures on diagnostic delay, factors of diagnostic delay, and people with sarcoidosis’ experiences of diagnostic delay.

Study design

Qualitative, quantitative and mixed methods will be included if they meet the PICOS eligibility criteria.

Other

No setting or publication date limitations will be applied. Only studies in English, German and Indonesian will be included.

Exclusion criteria

Studies on animals, review articles, clinical trials, randomized trials not reporting on delayed diagnosis, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis.

2. Comment 2

Please provide screening methodology, selection methodology

Response:

Separate sections on study selection and the study screening process have been added as suggested.

Edits in the manuscript:

Study selection (inclusion and exclusion criteria) – please see changes as described above in response to comment 1

Screening

Studies identified through the systematic search will undergo title and abstract screening followed by full text screening for those remaining.

Two review authors (** and **) will independently screen titles and abstracts, and full texts against the pre-developed inclusion criteria. Any conflicts will be discussed and resolved by consensus with a third reviewer (**). Exclusion rationales will be recorded.

3. Comment 3

Please provide exclusion criteria with details

Response:

Thank you for highlighting an important factor. A detailed exclusion criteria section has been added to the study selection and Table 2 as well.

Edits in the manuscript:

Exclusion criteria

Studies on animals, review articles, clinical trials, randomized trials not reporting on delayed diagnosis, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis.

4. Comment 4

Please provide possible limitation in the study.

Response:

A separate strengths and limitations section has been added to the manuscript.

Edits in the manuscript:

Strengths and limitations

The main strength of this systematic review will be the inclusion of all study types (qualitative, quantitative, and mixed methods) to integrate and analyse the current literature about diagnostic delay, its determinants and consequences, including people’s experiences of delayed diagnosis in all types of sarcoidosis. A potential limitation of the study will be insufficient studies with data on ethnic or gender differences in diagnostic delay. While there will be sufficient studies exploring pulmonary sarcoidosis, there may be insufficient studies for some rarer types to identify factors associated with delays in diagnosing pulmonary sarcoidosis.

5. Comment 5

We have expanded the introduction to include a background to the study and added a problem statement as requested. The rationale of the study has also been amended as suggested.

Edits in the manuscript:

Background

Sarcoidosis is a rare systemic inflammatory granulomatous disease. The incidence and prevalence of sarcoidosis vary across countries, and by ethnicity and gender. In studies using national datasets or large cohorts, the reported incidence is highest in northern Europe at 11.5 per 100,000 per year in Sweden (1) and 11.3-14.8 per 100,000 per year in Denmark (2). Lower incidences have been reported in Asian countries (3-5). Intra-country differences attributed to race are reported in the USA where the incidence among African Americans is higher than that of other Americans (6). In Canada, migrants accounted for 10% of cases, with South East Asian migrants disproportionately represented (7). Higher incidence rates among women have been reported in some studies, (6, 8, 9) but not in others (10) The pattern of disease may differ for women, and they may be diagnosed at a later age (1, 11) (12).

Sarcoidosis is a disease of unknown cause, which can manifest in any organ including heart, skin, liver, joints, nervous system and eyes (13, 14), but it most commonly affects the lungs (9). Its symptoms reflect the range of organs involved, from symptoms attributable to its more common pulmonary manifestation to unusual presentations involving other organs and subtle symptoms such as fatigue and pain (15-18). Sarcoidosis can be asymptomatic, and be discovered incidentally; in one study, 13.6% of cases of pulmonary sarcoidosis were asymptomatic (19). There is no single diagnostic test for sarcoidosis, nor a unified, commonly used set of diagnostic criteria. Diagnosis of sarcoidosis relies on clinical manifestations along with radiological or histological evidence and exclusion of possible alternative diagnoses (20).

The reported delay of onset of sarcoidosis ranges from six months to nine years depending on the organ involvement (21, 22). In one study in the USA, only 15.3% of cases were diagnosed at the first visit (23). Delays in diagnosis of sarcoidosis can lead to extension of the disease, organ impairment and can be attended by physical suffering and exhaustion among patients.

While there are studies investigating determinants of delay, there have been few systematic reviews of these studies, and none incorporating qualitative and quantitative research to incorporate people’s experiences of the processes associated with diagnostic delay. We aim to systematically review the evidence about diagnostic delay in sarcoidosis to elucidate the factors associated with diagnostic delay for this disease in different contexts and settings, and the consequences of this delay for people with sarcoidosis. More detailed information about the factors associated with delay may help throw light on points of intervention, and strategies to ensure earlier diagnosis.

6. Comment 6

Please provide statistical signification of the sarcoidosis disease? such as prevalence rate all around the world.

Response:

Apologies for not including this important information. We have added information about incidence rates as the study focuses on the diagnostic delay, Incidence rate is drawn from multiple countries around the world, it has been added as a range.

Edits in the manuscript:

Sarcoidosis is a rare systemic inflammatory granulomatous disease. The incidence and prevalence of sarcoidosis vary across countries, and by ethnicity and gender. In studies using national datasets or large cohorts, the reported incidence is highest in northern Europe at 11.5 per 100,000 per year in Sweden and 11.3-14.8 per 100,000 per year in Denmark (2). Lower incidences have been reported in Asian countries (3-5). Intra-country differences attributed to race are reported in the USA where the incidence among African Americans is higher than that of other Americans (6). In Canada, migrants accounted for 10% of cases, with South East Asian migrants disproportionately represented (7). Higher incidence rates among women have been reported in some studies, (6, 8, 9) but not in others (10) The pattern of disease may differ for women, and they may be diagnosed at a later age (1, 11) (12).

7. Comment 7

Please provide data management tools.

Response:

Thank you for your comment. A separate section on data management added.

Edits in the manuscript:

Data management

To ensure an independent review and screening process of the studies identified through the literature search we will use an internet-based software, Covidence, that facilitates collaboration between reviewers while maintaining independence (24). All search results will be imported to Covidence, and research team members will screen individually while being blinded to the choices made by other members. Any conflicts will be resolved through discussion and consensus following each screening process.

8. Comment 8

Please provide data collection process in detail

Response:

A detailed data extraction/collection section has been added as requested.

Edits in the manuscript:

Data extraction/ Data collection

Following completion of the study selection and screening, data extraction will be conducted in four stages: 1) development of a data extraction tool, 2) peer-review of the data extraction tool, 3) piloting of the data extraction tool, and 4) final data extraction. The data extraction tool will be designed by ** based on discussions with the research team and then reviewed by the team. This will be followed by a piloting stage where two reviewers (** and **) will independently extract data from the same five studies and compare their results to establish consensus and validity of the data extraction tool. Final data extraction will be conducted by an individual reviewer.

9. Comment 9

Please provide data items, data synthesis methodology. All information must written in detail under separate heading.

Response:

Thank you for pointing out this important issue. A separate and detailed section on data items and data synthesis has been added.

Edits in the manuscript:

Data items

The following data items will be extracted from the included studies:

1. Identification of the study

This will include name of the journal, authors, publication year, short citation, research center/university/hospital/organisation, conflict of interest, and funding/sponsorship.

2. Methods

This will include study aim, study design, diagnostic criteria used, participant demographics (mean age, sex, number of participants, ethnicity, country), recruitment process, inclusion, exclusion criteria, and statistical analysis.

3. Main findings

This will include diagnosis (sarcoidosis location), type of diagnostic delay (doctor’s delay or patient’s delay), diagnostic delay in months (standard deviation, standard error, confidence interval of the diagnostic delay) factors of delay (estimates, odds ratio, relative risk, standard deviations, standard errors and confidence intervals), main symptoms, patients’ experiences, and other relevant outcomes.

Data synthesis

The extracted data items will be exported to Excel (spreadsheet software) (20). The data synthesis will be conducted using R programming running under R studio version 4.2.1. The data synthesis process will comprise four stages: 1) data checking and cleaning, 2) data conversion, 3) descriptive statistics, 4) data examination for eligibility for inclusion in meta-analysis. In the data checking and cleaning stage, all extracted data items will be checked for misspelling and missing data will be double checked to ensure any data is not mistakenly left out. This will be followed by the conversion of outcomes to unified units (i.e., delay in diagnosis will be converted to months). In this stage, all data items will be labelled (i.e., delay in diagnosis will be labelled as a numerical value). This will be followed by summarising descriptive statistics of the included studies which will be used to examine the possibility of conducting a meta-analysis.

10. Comment 10

Please give PICO in detail under each heading.

Response:

A detailed section with separate headings for PICOS has been added as requested.

Edits in the manuscripts:

Study selection (inclusion and exclusion criteria)

The eligibility of the studies identified through the literature search will be determined according to the pre-developed PICOS eligibility criteria outlined in Table 2.

Inclusion criteria

Population

Studies examining people with all types of sarcoidosis and of all ages.

Intervention/Exposure

Studies about delayed diagnosis, incorrect diagnosis, missed diagnosis or slow diagnosis of sarcoidosis.

Comparison

Given the nature of the study there will be no comparison group.

Outcomes

Studies that have measures on diagnostic delay, factors of diagnostic delay, and people with sarcoidosis’ experiences of diagnostic delay.

Study design

Qualitative, quantitative and mixed methods will be included if they meet the PICOS eligibility criteria.

Other

No setting or publication date limitations will be applied. Only studies in English, German and Indonesian will be included.

11. Comment 11

Please provide implication of study protocol and what will be benefit of this protocol.

Response:

Thank you for your comment. Implications of the study protocol have been added.

Edits in the manuscripts:

Discussion

In this systematic review protocol, a detailed plan of all steps of the review including protocol development, search strategy, study selection, data extraction, quality assessment, and data synthesis has been described to ensure the production of unbiased evidence regarding the diagnostic delay of sarcoidosis, its factors, and the experiences of diagnostic delay among people with sarcoidosis. Knowledge gained from this review may throw light on ways to improve delays in diagnosis across different subpopulations, and with different disease presentations.

12. Comment 12

Include some more tool to assess and compare bias in different studies. The current methodology is insufficient.

Response:

Thank you for pointing out an important issue. We have included the MMAT as the methodological evaluation and NOS as an alternative choice if the included studies are all quantitative. We have also included an assessment of risk of bias as suggested.

Edits in the manuscript:

Assessment of risk of bias

The risk of bias of the included studies will be assessed through examining data presented as a funnel plot, a scatter plot of the effect sizes against the study sample (27). Visual inspection of asymmetry of the funnel plot will initially be conducted, with consideration of causes, including heterogeneity, reporting bias, publication bias and chance. In cases of funnel plot asymmetry, when there are more than ten studies included in the meta-analysis, further tests for funnel plot asymmetry will be used to assess the cause of bias (28).

Reviewer 1's comments:

1. Comment 1

The authors have responded to the queries raised. This reviewer would prefer to see the main findings rather than just the protocol.

Response:

Thank you for reviewing the manuscript. The results of the systematic review will be published when completed along with the data.

Reviewer 2's comments:

1. Comment 1

Previous comments have been sufficiently addressed.

The outcome of this study is promising and will most likely fulfil objectives of the study and contributes to the body of knowledge in this field.

Response:

Thank you for reviewing the manuscript and for your supportive comments. The results of this review will be published when completed and we hope this will contribute to the body of knowledge in diagnosis of sarcoidosis.

Reviewer 3's comments:

1. Comment 1

Lines 132-135: How will the authors examine patients’ experiences associated with diagnostic delays? This is not described in detail. Will there be a survey? Will evidence be based on published literature or follow up with respective authors? In the event that there are not enough studies detailing patients’ experiences, how do the authors plan to make up for that?

Response:

In this review we will review the available evidence of people’s experience of diagnostic delay of sarcoidosis. This evidence would most often be reported through the use of surveys or qualitative studies, including individual interviews or focus groups with people living with sarcoidosis. For this reason, we will include all types of studies (quantitative, qualitative and mixed methods).

If there is a lack of studies on people’s experience in diagnostic delay of sarcoidosis, due to the guidelines, we cannot take any additional steps as it may introduce bias to the study. However, in that case, it would mean we have identified a gap in the literature and future studies could focus on closing that gap and bringing more knowledge on the topic.

2. Comment 2

Since there are no limitations on publication dates, it would be interesting to see if the study shows a trend of stagnancy or improvement in diagnostic delay over the years.

Response:

Thank you for the interesting point. Yes, looking at the trend would bring in good idea of the diagnostic improvement over the years. We can do an analysis on the year of publication. This was reflected in the manuscript as well.

Edits in the manuscript:

The main analysis will be pooled diagnostic delay in each type of sarcoidosis in conjunction with subgroup analyses (i.e., types of sarcoidosis, health service utilization, year of publication).

3. Comment 3

I totally agree with reviewer 1 about publishing the protocol as part of a complete systematic review and meta-analysis manuscript because that will be more informative and helpful.

Response:

Thank you for your comment. We agree publishing the results will be important when the review is complete.

However, we are keen to publish this protocol as a methodological paper and as a foundation for our research and as a guide for future researchers.

Attachment

Submitted filename: Response to reviewers_final_submission.docx

Decision Letter 2

Muhammad Shahzad Aslam

5 Dec 2022

Diagnostic delay of sarcoidosis: protocol for an integrated systematic review

PONE-D-22-15192R2

Dear,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Muhammad Shahzad Aslam, Ph.D.,M.Phil., Pharm-D

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Partly

Reviewer #3: Yes

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Yes

Reviewer #3: Yes

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Descriptions of methods and materials in the protocol should be reported in sufficient detail for another researcher to reproduce all experiments and analyses. The protocol should describe the appropriate controls, sample size calculations, and replication needed to ensure that the data are robust and reproducible.

Reviewer #1: Yes

Reviewer #3: Yes

**********

4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: No

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: No new comments

Reviewer #3: Authors have adequately addressed my concerns. It will be interesting to see the outcome of this study and how the results bridge the gaps in knowledge of sarcoidosis diagnosis delays.

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Reviewer #1: No

Reviewer #3: Yes: Shakirat A Adetunji

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Acceptance letter

Muhammad Shahzad Aslam

7 Dec 2022

PONE-D-22-15192R2

Diagnostic delay of sarcoidosis: protocol for an integrated systematic review

Dear Dr. Parkinson:

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on behalf of

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 File. Diagnostic delay of sarcoidosis: A protocol of an integrated systematic review.

    (DOCX)

    Attachment

    Submitted filename: Response to reviewers.docx

    Attachment

    Submitted filename: Response to reviewers_final_submission.docx

    Data Availability Statement

    No datasets were generated or analysed during the current study. All relevant data from this study will be made available upon study completion.


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