Skip to main content
Membranes logoLink to Membranes
. 2023 Jan 19;13(2):131. doi: 10.3390/membranes13020131

Mathematical Analysis on Current–Voltage Relations via Classical Poisson–Nernst–Planck Systems with Nonzero Permanent Charges under Relaxed Electroneutrality Boundary Conditions

Yiwei Wang 1, Lijun Zhang 1, Mingji Zhang 1,2,*
Editors: Annarosa Arcangeli, Claudia Duranti
PMCID: PMC9962733  PMID: 36837634

Abstract

We focus on a quasi-one-dimensional Poisson–Nernst–Planck model with small permanent charges for ionic flows of two oppositely charged ion species through an ion channel. Of particular interest is to examine the dynamics of ionic flows in terms of I–V (current–voltage) relations with boundary layers due to the relaxation of neutral conditions on boundary concentrations. This is achieved by employing the regular perturbation analysis on the solutions established through geometric singular perturbation analysis. Rich dynamics are observed, particularly, the nonlinear interplays among different physical parameters are characterized. Critical potentials are identified, which play critical roles in the study of ionic flows and can be estimated experimentally. Numerical simulations are performed to further illustrate and provide more intuitive understandings of our analytical results.

Keywords: PNP, permanent charges, I–V relations, critical potentials, boundary layers

MSC: 34A26, 34B16, 34D15, 37D10, 92C35

1. Introduction

Ion channels are pore-forming membrane proteins allowing charged particles to pass through the channel pore. Ion channels are embedded in cell membranes, which provide a major medium for cells to communicate with each other and with outside environment ([1,2,3]). In this way, ion channels control a wide range of biological functions, in particular, many varied functions are necessary for life (see [2] for more discussion). Clinically, malfunctioning channels cause cystic fibrosis, cholera, neuronal disorders, and many other diseases ([4]). Therefore, it is significant to explore the mechanism of ion channels.

The study of ion channels generally consists of two related major topics: structures of ion channels and ionic flow properties. The physical structure of ion channels is defined by the channel shape and the spacial distribution of permanent charges and the polarity of these charges. For open channels with given structures, the main interest is in the study of its electrodiffusion property. The most challenging part in examining the properties of ionic flows through membrane channels is the characterization of the nonlinear interplays among specific physical parameters involved in the system, particularly, the boundary concentrations and membrane potential, permanent charge distribution within the channel, channel geometry and diffusion coefficients. On the other hand, all present experimental measurements about ionic flow are of input-output type ([1]); that is, the internal dynamics within the channel cannot be measured with the current technology. Therefore, it is extremely difficult to extract coherent properties or to formulate specific characteristic quantities from the experimental measurements.

Mathematical analysis plays important and unique roles for generalizing and understanding the principles that allow control of electrodiffusion, explaining the mechanics of observed biological phenomena and for discovering new ones, under the assumption that a more or less explicit solution of the associated mathematical model can be obtained. Recently, there have been some successes in mathematical analysis of Poisson–Nernst–Planck (PNP) models for ionic flows through membrane channels ([5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26] etc.). Particularly, for those that were studied under the dynamical system framework of geometric singular perturbation analysis, interesting phenomena of ionic flows were observed for relatively simple setups. However, for all the works mentioned here, the so-called electroneutrality boundary conditions are reinforced, and the boundary layers, which play critical roles in the study of ion channel problems, disappear.

To further understand the correlations/interactions among ions, we consider a PNP model with nonzero but small permanent charges under relaxed electroneutrality boundary concentration conditions. Of particular interest is the effect on the I–V relations from boundary layers, which can be mathematically extracted from solutions of the PNP system. Our study will take great advantage of the work conducted in [11]. To be specific, in [11], the authors treat the nonzero permanent charge as a small parameter, and employ the regular perturbation analysis to the solutions, from which they obtain the zeroth-order and first-order individual fluxes under electroneutrality boundary conditions. This will be our starting point. More precisely, the individual fluxes obtained in [11] allow us to define the current–voltage (I–V) relations directly (see (15) in Section 2.2). To examine the boundary layer effects on the I–V relations, we relax the electroneutrality boundary conditions by introducing two positive parameters, σ and ρ close to but not simultaneously equal to 1 (see our discussion in Section 1.3). We next employ the regular perturbation analysis to these two parameters, in other words, we expand our I–V relations at (σ,ρ)=(1,1) up to the first order and neglect higher order terms. Our main interest is then in the first-order terms, the leading terms that contain boundary layer effects.

1.1. One-Dimensional Poisson–Nernst–Planck Models

PNP system is a basic macroscopic model for electrodiffusion of charges through ion channels ([27,28,29,30,31,32,33,34,35,36], etc.) Under various reasonable conditions, the PNP system can be derived as a reduced model from molecular dynamics, Boltzmann equations, and variational principles ([37,38,39,40]).

Based on the fact that the channel is narrow and one can effectively view it as a one-dimensional channel [0,l], where l (with unit nm) is the length of the channel together with the baths that the channel links. A quasi-one-dimensional steady-state PNP model for a mixtures of n ion species though a single channel reads (first proposed in [41])

1h(x)ddxεr(x)ε0h(x)dΦdx=es=1nzscs+Q(x),dJkdx=0,Jk=1kBTDk(x)h(x)ckdμkdx,k=1,2,,n, (1)

where x[0,1] is the coordinate along the axis of the channel that is normalized to [0,1], h(x) is the area of cross-section of the channel over the location x.

For system (1), we have the following boundary conditions (see [8] for a reasoning), for k=1,2,,n,

Φ(0)=V,ck(0)=Lk>0;Φ(1)=0,ck(1)=Rk>0,k=1,2,,n, (2)

where

  • e1.60×1019 (C = coulomb) is the elementary charge;

  • kB1.38×1023 (JK1) is the Boltzmann constant;

  • T is the absolute temperature (unit K (kelvin)), it is T=273.16 (K);

  • Φ(x) is the electric potential with the unit V = Volt = JC1;

  • Q(x) is the permanent charge density of the channel (with unit 1/m3);

  • ε0(x) is the local dielectric coefficient (with unit Fm1);

  • εr(x) is the relative dielectric coefficient (with unit 1);

  • h(x) represents the area of the cross-section over the point x (with unit m2);

  • n is the number of distinct types of ion species (with unit 1);

  • for the jth ion species;
    • -
      cj is the number density (with unit 1/m3);
    • -
      zj is the valence (the number of charges per particle with unit 1);
    • -
      μj is the electrochemical potential (with unit J = CV);
    • -
      Jj is the number flux density (with unit 1/s) – the number of particles across each cross-section per unit time;
    • -
      Dj(x) is the diffusion coefficient (with unit m2/s).

1.2. Permanent Charges

It is known that the spatial distribution of side chains in a specific channel defines the permanent charge of the channel. Although some information could be obtained without considering the permanent charge and by focusing on the effects of other system parameters, such as boundary conditions, ion valences, ion sizes, etc., we believe that different channel types differ mainly in the distribution of permanent charge ([2]). To better understand the dependence of ionic flows on permanent charges, we demonstrate that the role of permanent charges in membrane channels is similar to the role of doping profiles in semiconductor devices. Semiconductor devices are similar to membrane channels in the way that they both use atomic-scale structures to control macroscopic flows from one reservoir to another. Ions move a lot like quasi-particles move in semiconductors. Roughly, holes and electrons are the cations and anions of semiconductors. Semiconductor technology depends on the control of migration and diffusion of quasi-particles of charge in transistors and integrated circuits. Doping is the process of adding impurities into intrinsic semiconductors to modulate its electrical, optical, and structural properties ([42,43]). Roughly speaking, one may understand in the following sense, doping provides the charges that acid and basic side chains provide in a protein channel. There is no doubt that, for both ion channels and semiconductors, permanent charges add an additional component—probably the most important one—to their rich behavior. In general, the permanent charge Q(x) is modeled by a piecewise constant function, that is, we assume, for a partition x0=0<x1<<xm1<xm=l of [0,l] into m subintervals, Q(x)=Qj for x(xj1,xj) where Qj’s are constants with Q1=Qm=0 (the intervals [x0,x1] and [xm1,xm] are viewed as the reservoirs where there is no permanent charge).

In [8], under the framework of geometric singular perturbation theory, the existence and uniqueness (local) was established for the boundary value problem (1) and (2) with one cation and one anion and the permanent charge function modeled by

Q(x)=0if0<x<a;Q(x)=Q0ifa<x<b;Q(x)=0ifb<x<1, (3)

where Q0 is some nonzero constant. Due to the challenge in obtaining explicit expressions of the I–V relation with nonzero permanent charges, in [11], the author studied the case with Q0 in (3) being small and employed regular perturbation analysis (viewing Q0 as a small perturbation to the solutions of the system (1) and (2)) to further study the effects on ionic flows from the permanent charges. The analysis in [11] (Proposition 4.11 and its following discussion) indicates that to optimize the effect of the permanent charge, a short and narrow neck within which the permanent charge is confined, is expected. This indicates the critical role that the permanent charge plays in the study of ionic flow properties of interest.

1.3. Relaxed Electroneutrality Boundary Conditions

To describe the actual behavior of channels or useful transistors, macroscopic reservoirs linked by ion channels must be included ([30,31,44,45]). Macroscopic boundary conditions that describe such reservoirs introduce boundary layers of concentration and charge. If those boundary layers reach into the part of the device that performs atomic control, they prominently influence its behavior. Particularly, boundary layers of charge are probably to produce artifacts over long distances because the electric field spreads a long way.

The boundary layer should be handled more carefully in the study of such problems, particularly for ion channel problems. In [8,13,26], the boundary layer is characterized partially, mainly in establishing the existence and local uniqueness result of the PNP system. However, the effects from the boundary layers on ionic flows, which in general carry more rich information, are not analyzed. This is because, very often, when examine the qualitative properties of ionic flows through ion channels, electroneutrality boundary conditions are naturally enforced at both ends of the channel (see, e.g., [5,6,11,12,20,21,46,47,48,49,50,51]). They are defined as

s=1nzsLs=s=1nzsRs=0. (4)

However, under the condition (4), the two boundary layers disappear (see [52] for more detailed discussion).

To better understand the mechanism of ionic flows through membrane channels, the boundary layer effects should be carefully considered during the study. Meanwhile, due to the sensitivity of electric potentials on boundary layers, a first but natural step is to study the state that is not neutral but close to. More precisely, one may assume (taking n=2 in (4), for example)

z2L2z1L1=σandz2R2z1R1=ρ, (5)

where σ and ρ are some positive constants close to but not equal to 1 simultaneously (σ=1=ρ in (5) implies neutral state). Following this idea, some recent works (see [22,52,53] for examples) have shown that more rich qualitative properties of ionic flows were observed while boundary layers are involved. Particularly, the authors in [52] analyzed the boundary layer effects on individual fluxes via PNP system with nonzero but small permanent charges. All the works indicate the importance of the role played by the boundary layer in the study of ionic flow properties of interest.

1.4. Problem Set-Up

In this work, we take the same setting as that in [11] but without assuming electroneutrality boundary conditions (4) for n=2, which includes:

  • (A1).

    We consider two charged particles (n=2) with z1>0 and z2<0;

  • (A2).
    The PNP model only includes the ideal component μiid(X) of the electrochemical potential defined by
    μkid(x)=zkeΦ(x)+kBTlnck(x)c0, (6)
    where c0 is some characteristic number density.
  • (A3).

    εr(X)=εr and Di(X)=Di.

We will assume (A1)–(A3) from now on. We first make the following dimensionless rescaling ([11]). Let

ϕ=ekBTΦ,V=ekBTV,ε2=εrε0kBTe2,Jk=Jkc0Dk,

Correspondingly, the boundary value problem (1) and (2) becomes

ε2h(x)ddxh(x)ddxϕ=z1c1z2c2Q(x),h(x)dckdx+zkh(x)ckdϕdx=Jk,dJkdx=0,k=1,2 (7)

with the boundary conditions

ϕ(0)=V,ck(0)=Lk;ϕ(1)=0,ck(1)=Rk,k=1,2. (8)

2. Methods

We take the advantage of the work done in [11], and further employ regular perturbation analysis on the parameters σ and ρ introduced in (5).

2.1. Previous Results

To get started, we first recall some results from [11], which are fundamental for our following discussion. Treating the nonzero permanent charge |Q0| small compared to the boundary concentrations Lk’s and Rk’s, the authors in [11] expanded the individual flux Jk(V;Q0) along Q0=0:

Jk(V;Q0)=Jk0(V)+Jk1(V)Q0+o(Q0), (9)

where Jk=DkJk. It follows that Jk0=DkJk0 and Jk1=DkJk1, where

J10=(c1Lc1R)(z1V+lnL1lnR1)H(1)(lnc1Llnc1R),J20=(c2Lc2R)(z2V+lnL2lnR2)H(1)(lnc2Llnc2R),J11=A(z2(1B)λ+1)(z1z2)H(1)(z1λ+1),J21=A(z1(1B)λ+1)(z2z1)H(1)(z2λ+1), (10)

with

λ=ϕLϕRlnc1Llnc1R,A=(c1Lc1R)(c10bc10a)c10ac10b(lnc1Llnc1R),B=lnc10blnc10aA=(lnc1Llnc1R)(lnc10blnc10a)(c1Lc1R)(c10bc10a)c10ac10b. (11)

Here,

ϕL=V1z1z2lnz2L2z1L1,z1c1L=z2c2L=(z1L1)z2z1z2(z2L2)z1z1z2,ϕR=1z1z2lnz2R2z1L1,z1c1R=z2c2R=(z1R1)z2z1z2(z2R2)z1z1z2,c10a=c1L+α(c1Rc1L),c10b=c1L+β(c1Rc1L), (12)

where, with H(x)=0x1h(s)ds,

α=H(a)H(1)andβ=H(b)H(1). (13)

We define the following function, which will be used often in our analysis. For t>0, set

γ(t)=tlntt+1(t1)lntfort1andγ(1)=12. (14)

One establishes easily that

Lemma 1.

For t>0, one has

0<γ(t)<1,γ(t)>0,limt0γ(t)=0andlimtγ(t)=1.

2.2. Main Interest and Regular Perturbation Analysis

The most basic function of membrane channels is to regulate the permeability of membranes for a given species of ions and to select the types of ions and to facilitate and modulate the diffusion of ions across cell membranes. Currently, the permeation and selectivity properties of ion channels are usually characterized by the I–V relations measured experimentally [27,54]. Our main interest is to analyze the qualitative properties of the I–V relations and characterize the nonlinear interplays between physical parameters. More precisely, we consider

I(V;ε,Q0)=I0(V)+I1(V;λ)Q0+o(Q0), (15)

where

I0=z1D1J10+z2D2J20=z1D1c1Lc1Rz1V+lnL1lnR1H(1)(lnc1Llnc1R)+z2D2c2Lc2Rz2V+lnL2lnR2H(1)(lnc2Llnc2R),I1=z1D1J11+z2D2J21=z1D1A(z2(1B)λ+1)(z1z2)H(1)(z1λ+1)+z2D2A(z1(1B)λ+1)(z2z1)H(1)(z2λ+1).

Note that the assumption (5) implies that, for fixed L1 and R1,

c1L=σz1z1z2L1,c1R=ρz1z1z2R1,c2L=z1z2σz1z1z2L1,c2R=z1z2ρz1z1z2R1,λ(σ,ρ)=V1z1z2(lnσlnρ)θ(σ,ρ),A(σ,ρ)=(αβ)σz1z1z2L1ρz1z1z2R12θ(σ,ρ)ω(β;σ,ρ)ω(α;σ,ρ),B(σ,ρ)=θ(σ,ρ)ω(β;σ,ρ)ω(α;σ,ρ)lnω(β;σ,ρ)lnω(α;σ,ρ)(αβ)σz1z1z2L1ρz1z1z2R12,

where

ω(x;σ,ρ)=(1x)σz1z1z2L1+xρz1z1z2R1,θ(σ,ρ)=z1z1z2(lnσlnρ)+lnL1lnR1. (16)

For convenience, we define five functions P00=P00(σ,ρ),P01=P01(σ,ρ), P10=P10(σ,ρ), P11=P11(σ,ρ) and P12=P12(σ,ρ) by

P00=z1σz1z1z2L1ρz1z1z2R1H(1)θ(σ,ρ)(D1D2)(lnL1lnR1)D2(lnσlnρ),P01=z1(z1D1z2D2)σz1z1z2L1ρz1z1z2R1H(1)θ(σ,ρ),P10=A(z1z2)H(1)[z1z2(z1D1z2D2)(1B)(lnσlnρ)2(z1z2)2θ2(σ,ρ)z1z2(D1D2)(1B)+z12D1z22D2(lnσlnρ)(z1z2)θ(σ,ρ)+z1D1z2D2],P11=A(z1z2)H(1)[2z1z2(z1D1z2D2)(1B)(lnσlnρ)(z1z2)θ2(σ,ρ)+z1z2(D1D2)(1B)+z12D1z22D2θ(σ,ρ)],P12=z1z2(z1D1z2D2)(1B)A(z1z2)H(1)θ2(σ,ρ). (17)

Then, I0 and I1 can be rewritten as

I0(V;σ,ρ)=P00(σ,ρ)+P01(σ,ρ)V,I1(V;σ,ρ)=P10(σ,ρ)+P11(σ,ρ)V+P12(σ,ρ)V2. (18)

Recall that our main interest in this work is to examine the qualitative properties of the I–V relations close to the state of electroneutrality, more precisely, based on our set-ups, it is the case as (σ,ρ)(1,1). We now employ the regular perturbation analysis and expand Ik(V;σ,ρ) for k=0,1 at (σ*,ρ*)=(1,1) up to the first order and neglect higher orders. Careful calculations give

I0(V;σ,ρ)=P00(1,1)+P00σ(1,1)(σ1)+P00ρ(1,1)(ρ1)+[P01(1,1)+P01σ(1,1)(σ1)+P01ρ(1,1)(ρ1)]V,I1(V;σ,ρ)=P10(1,1)+P10σ(1,1)(σ1)+P10ρ(1,1)(ρ1)+[P11(1,1)+P11σ(1,1)(σ1)+P11ρ(1,1)(ρ1)]V+[P12(1,1)+P12σ(1,1)(σ1)+P12ρ(1,1)(ρ1)]V2, (19)

where

P00(1,1)=z1(D1D2)H(1)(L1R1),P00σ(1,1)=z1(z1D1z2D2)(z1z2)H(1)f0(L1,R1)z1(D1D2)z1D1z2D2L1,P00ρ(1,1)=z1(z1D1z2D2)(z1z2)H(1)f0(L1,R1)z1(D1D2)z1D1z2D2R1,
P01(1,1)=z1(z1D1z2D2)H(1)f0(L1,R1),P01σ(1,1)=z12(z1D1z2D2)f0(L1,R1)L1(z1z2)H(1)(lnL1lnR1),P01ρ(1,1)=z12(z1D1z2D2)f0(L1,R1)R1(z1z2)H(1)(lnL1lnR1),P10(1,1)=(z1D1z2D2)A(1,1)(z1z2)H(1),P10σ(1,1)=1(z1z2)H(1)(z1z2(D1D2)(1B(1,1))+z12D1z22D2(z1z2)(lnL1lnR1)A(1,1)+(z1D1z2D2)Aσ(1,1)),P10ρ(1,1)=1(z1z2)H(1)(z1z2(D1D2)(1B(1,1))+z12D1z22D2(z1z2)(lnL1lnR1)A(1,1)+(z1D1z2D2)Aρ(1,1)),P11(1,1)=z1z2(D1D2)(1B(1,1))+z12D1z22D2(z1z2)H(1)(lnL1lnR1)A(1,1),P11σ(1,1)=1(z1z2)H(1)[z1z2(D1D2)(1B(1,1))+z12D1z22D2lnL1lnR1Aσ(1,1)z1(z2(1B(1,1))z1(D1D2)+2(z1D1z2D2)+z12D1z22D2(z1z2)(lnL1lnR1)2+z2(D1D2)lnL1lnR1Bσ(1,1))A(1,1)],P11ρ(1,1)=1(z1z2)H(1)(z1z2(D1D2)(1B(1,1))+z12D1z22D2lnL1lnR1Aρ(1,1)+z1[z2(1B(1,1))z1(D1D2)+2(z1D1z2D2)+z12D1z22D2(z1z2)(lnL1lnR1)2z2(D1D2)lnL1lnR1Bρ(1,1))A(1,1)],P12(1,1)=z1z2(z1D1z2D2)(1B(1,1))A(1,1)(z1z2)H(1)(lnL1lnR1)2,P12σ(1,1)=z1z2(z1D1z2D2)(z1z2)H(1)[(1B(1,1))Aσ(1,1)Bσ(1,1)A(1,1)(lnL1lnR1)22z1(1B(1,1))A(1,1)(z1z2)(lnL1lnR1)3],P12ρ(1,1)=z1z2(z1D1z2D2)(z1z2)H(1)[(1B(1,1))Aρ(1,1)Bρ(1,1)A(1,1)(lnL1lnR1)2+2z1(1B(1,1))A(1,1)(z1z2)(lnL1lnR1)3].

Here

f0(L1,R1)=L1R1lnL1lnR1,A(1,1)=(αβ)(L1R1)ω(β;1,1)ω(α;1,1)f0(L1,R1),B(1,1)=ω(β;1,1)ω(α;1,1)lnω(β;1,1)lnω(α;1,1)(αβ)(L1R1)f0(L1,R1),Aσ(1,1)=z1(αβ)f0(L1,R1)(z1z2)ω(α;1,1)ω(β;1,1)[2L1f0(L1,R1)(1β)ω(α;1,1)+(1α)ω(β;1,1)ω(α;1,1)ω(β;1,1)L1(L1R1)],Aρ(1,1)=z1(αβ)f0(L1,R1)(z1z2)ω(α;1,1)ω(β;1,1)[2R1+f0(L1,R1)βω(α;1,1)+αω(β;1,1)ω(α;1,1)ω(β;1,1)R1(L1R1)],Bσ(1,1)=1A2(1,1)[z1(αβ)L1R1A(1,1)(z1z2)ω(α;1,1)ω(β;1,1)lnω(β;1,1)lnω(α;1,1)A(σ,ρ)σ(1,1)],Bρ(1,1)=1A2(1,1)[z1(αβ)L1R1A(1,1)(z1z2)ω(α;1,1)ω(β;1,1)+lnω(β;1,1)lnω(α;1,1)A(σ,ρ)ρ(1,1)],

where ω(α;1,1)=(1α)L1+αR1 and ω(β;1,1)=(1β)L1+βR1.

3. Results

In this section, based on the regular perturbation analysis provided in Section 2.2, we further examine the qualitative properties of ionic flows with boundary layers. To provide more intuitive illustrations of the analytical results obtained in Section 3.1 and Section 3.2, numerical simulations under different set-ups are performed in Section 3.3.

To examine the effects on the I–V relations from the boundary layers, we consider

I0d:=I0(V;σ,ρ)I0(V;1,1)andI1d:=I1(V;σ,ρ)I1(V;1,1), (20)

respectively. Correspondingly, one has

Id=I0d+QI1d+o(Q). (21)

From (19), one has

I0d=P00σ(1,1)(σ1)+P00ρ(1,1)(ρ1)+[P01σ(1,1)(σ1)+P01ρ(1,1)(ρ1)]V,I1d=P10σ(1,1)(σ1)+P10ρ(1,1)(ρ1)+[P11σ(1,1)(σ1)+P11ρ(1,1)(ρ1)]V+P12σ(1,1)(σ1)+P12ρ(1,1)(ρ1)V2. (22)

3.1. Analysis on I0d

Note that I0d is a linear function in the potential V. The sign of the slope is of particular interest for us, and the following result can be established.

For t=L1/R1, direct computation gives

P01σ(1,1)(σ1)+P01ρ(1,1)(ρ1)=z12(z1D1z2D2)R1(z1z2)H(1)ln2th(t),

where h(t)=(σ1)tlnt+(1ρ)lnt+(ρσ)(t1). For the function h(t), one has

Lemma 2.

Assume (σ,ρ)(1,1) with σ>ρ and t=L1/R1>1. One has

  • (i)

    h(t)>0 if σ+ρ>2 with σ>1;

  • (ii)

    h(t)<0 if σ+ρ<2 with σ<1;

  • (iii)

    There exists a unique t*>1 such that for (σ,ρ)(1+,1) with σ+ρ<2, one has h(t)<0 if 1<t<t* and h(t)>0 if t>t*. In particular, t* is the root of h(t)=0.

Proof. 

The proof is straightforward, and we omit it here. □

It follows from Lemma 2 that

Theorem 1.

Assume (σ,ρ)(1,1) with σ>ρ and t=L1/R1>1. One has

  • (i)

    I0d is increasing in the potential V if one of the following conditions holds

    • (i1)

      σ+ρ>2 with σ>1;

    • (i2)

      t>t* with σ+ρ<2 and σ>1.

    Furthermore, there exists a unique zero V01d of I0d(V;σ,ρ)=0 such that

    I0d(V;σ,ρ)>0 (respectively, I0d(V;σ,ρ)<0) if V>V01d (respectively, V<V01d), equivalently, the effect from boundary layers enhances (respectively, reduces) I0 for V>V01d (respectively, V<V01d).

  • (ii)

    I0d is decreasing in the potential V if one of the following conditions holds

    • (ii1)

      σ+ρ<2 with σ<1;

    • (ii2)

      t<t* with σ+ρ<2 and σ>1.

    Furthermore, there exists a unique zero V02d of I0d(V;σ,ρ)=0 such that

    I0d(V;σ,ρ)>0 (respectively, I0d(V;σ,ρ)<0) if V<V02d (respectively, V>V02d), equivalently, the effect from boundary layers enhances (respectively, reduces) I0 for V<V02d (respectively, V>V02d).

3.2. Analysis of I1d

We first consider the sign of the coefficient of V2 in I1d(V). For convenience, we define g(β)=P12σ(1,1)(σ1)+P12ρ(1,1)(ρ1). For t=L1/R1, one has

g(β)=z12z2(z1D1z2D2)(z1z2)2ω1(α;1,1)ω1(β;1,1)H(1)ln3tg1(β),

where

g1(β)=2ω1(α;1,1)ω1(β;1,1)(σρ)lnω1(β;1,1)ω1(α;1,1)+(αβ)[t(ρσ)lnt+(t1)(2t(σ1)2(ρ1)+3(t1)(ρσ)lntt1ω1(α;1,1)ω1(β;1,1)(t(σ1)[(1β)ω1(α;1,1)+(1α)ω1(β;1,1)]+(ρ1)[βω1(α;1,1)+αω1(β;1,1)]))],ω1(α;1,1)=(1α)t+α,ω1(β;1,1)=(1β)t+β.

Lemma 3.

Assume (σ,ρ)(1,1) with σ>ρ and t=L1/R1>1. Let α1=ttt1, one has

  • (i)

    If α(0,α3), then g(β)>0;

  • (ii)

    If α[α3,α1), then g(β)<0;

  • (iii)

    If α[α1,α4), then there exists a unique β1>α such that g(β)<0 for β(α,β1) and g(β)>0 for β(β1,1);

  • (iv)

    If α[α4,1), then g(β)>0.

Here, α3 and α4 are two roots of g2(α)=0 with

g2(α)=(1t)(2tlnt+3(1t)ω1(α;1,1))+tω1(α;1,1)ln2t2(t1)ω12(α;1,1)lnt.

They are given by

α3=3(1t)2tln2t+4t(t1)lntp(t)4(t1)2lnt,α4=3(1t)2tln2t+4t(t1)lnt+p(t)4(t1)2lnt,

where p(t)=9(t1)4+t2ln4t10t(t1)2ln2t.

Proof. 

It is clear that g(β) has the opposite sign as that of g1(β). Note that

limβαg1(β)=0,limβαg1(β)=σρω1(α;1,1)lntg2(α),limβαg1(β)=2(σρ)(t1)2ω12(α;1,1)g3(α),

where g3(α)=ω12(α;1,1)t.

For t>1, g3(α) is a quadratic function in α, and concave upward, it follows that g3(α)=0 has two roots given by α1 and α2=t+tt1>1. For (σ,ρ)(1,1), σ>ρ and t=L1/R1>1, if α(0,α1], then g3(α)0 and limβαg1(β)0; if α(α1,1), then g3(α)<0 and limβαg1(β)<0.

For t>1, g2(α) is a quadratic function in α, and concave downward, it follows that g2(α)=0 has two roots given by α3 and α4. For (σ,ρ)(1,1), σ>ρ and t=L1/R1>1, if α(0,α3][α4,1), then g2(α)0 and limβαg1(β)0; if α(α3,α4), then g2(α)>0 and limβαg1(β)>0.

Direct computation gives 0<α3<α1<α4<1, for (σ,ρ)(1,1), σ>ρ and t=L1/R1>1. Since limβαg1(β)=0, one has

  • (i)

    If α(0,α3), then limβαg1(β)>0 and limβαg1(β)<0. We can easily get g1(1)<0, and hence g1(β)<0;

  • (ii)

    If α[α3,α1), then limβαg1(β)>0 and limβαg1(β)0, hence g1(β)>0;

  • (iii)

    If α[α1,α4), then limβαg1(β)0 and limβαg1(β)>0. We can easily get g1(1)<0, and hence, there exists a unique β1>α such that g1(β)>0 for β(α,β1) and g1(β)<0 for β(β1,1);

  • (iv)

    If α[α4,1), then limβαg1(β)<0 and limβαg1(β)0, hence g1(β)<0.

This completes the proof. □

Form Lemma 3, the following result can be established.

Theorem 2.

Assume (σ,ρ)(1,1) with σ>ρ and t=L1/R1>1. There exists a unique critical potential V1c such that

  • (i)

    For α(0,α3), one has I1d(V) increases (respectively, decreases) in the potential V if V>V1c (respectively, V<V1c);

  • (ii)

    For α[α3,α1), one has I1d(V) increases (respectively, decreases) in the potential V if V<V1c (respectively, V>V1c);

  • (iii)

    For α[α1,α4), then there exists a unique β1>α such that I1d(V) decreases in the potential V for β(α,β1) and increases in V for β(β1,1);

  • (iv)

    For α[α4,1), I1d(V) increases in the potential V.

We now turn to the sign of I1d(V). We first consider the sign of g4(α), which will be used in the proof of Theorem 3. Here, g4(α) is defined by

g4(α)=4t2ln2t8t(t1)ω1(α;1,1)lnt+3(t1)2ω12(α;1,1)[(z12D1z22D2)2+z1z2(αγ(t))(8z1z2D1D22(z12D1+z22D2)(D1+D2))lnt+z12z22(D1D2)2(αγ(t))2ln2t]+(t1)2ω12(α;1,1)(z12D1z22D2+z2(2z2D2z1D1z1D2)(αγ(t))lnt)2+2z2tlnt(t1)ω1(α;1,1)lnt×(z12D1z22D2)(z1D1+z1D22z2D2)z12z2(D1D2)2(αγ(t))lntω12(α;1,1).

For the function g4(α), the following result can be established.

Lemma 4.

Assume t=L1/R1(1,2) and γ(t) be as in (14). For the function g4(α), there exists a unique zero α* such that g4(α)>0 for α<α*, and g4(α)<0 for α>α*.

Proof. 

The discussion is then straightforward, and we omit it here. □

Remark 1.

The function g4(α) defined above is very complicated to analyze. The number of zeros depends on the parameter t sensitively. In this work, we just consider the simplest case.

If g(β)0, then I1d=0 is a quadratic equation in V, whose discriminant is

Δ=Δ1(z1z2)2H2(1)(lnL1lnR1)2,

where Δ1=Δ10+Δ11+Δ12+Δ13+Δ14 with

Δ10=[z1z2(1B(1,1))(8z1z2D1D22(z12D1+z22D2)(D1+D2))+(z12D1z22D2)2+z12z22(D1D2)2(1B(1,1))2]×Aσ(1,1)(σ1)+Aρ(1,1)(ρ1)×Aσ(1,1)(σ1)+Aρ(1,1)(ρ1)+2z1(ρσ)A(1,1)(z1z2)(lnL1lnR1),Δ11=z12(σρ)2A2(1,1)(z1z2)2(lnL1lnR1)2(z12D1z22D2+z2(1B(1,1))(2z2D2z1D1z1D2))2,
Δ12=z12z22(D1D2)2[z1(αβ)(σρ)L1R1A(1,1)(z1z2)ω(α;1,1)ω(β;1,1)Aσ(1,1)(σ1)+Aρ(1,1)(ρ1)lnω(β;1,1)ω(α;1,1)]2,Δ13=2z1z2(ρσ)(z1z2)(lnL1lnR1)(z12z2(D1D2)2(1B(1,1))+(z12D1z22D2)(z1D1+z1D22z2D2))[z1(αβ)(σρ)L1R1A(1,1)(z1z2)ω(α;1,1)ω(β;1,1)Aσ(1,1)(σ1)+Aρ(1,1)(ρ1)lnω(β;1,1)ω(α;1,1)],Δ14=2z1z2A(1,1)(2(z1D1z2D2)2z1z2(D1D2)2(1B(1,1))(D1D2)(z12D1z22D2))[z1(αβ)(σρ)L1R1A(1,1)(z1z2)ω(α;1,1)ω(β;1,1)Aσ(1,1)(σ1)+Aρ(1,1)(ρ1)lnω(β;1,1)ω(α;1,1)]×Aσ(1,1)(σ1)+Aρ(1,1)(ρ1).

Theorem 3.

Assume (σ,ρ)(1,1) with σ>ρ and t=L1/R1(1,2). With 0<α3<α*<α1<α4<1, one has

  • (i)

    If α(0,α3), then Δ>0, and there exist two critical potentials V11d and V12d (assuming V11d<V12d for convenience) such that

    • (i1)

      If V=V11d or V=V12d, then I1d(V)=0;

    • (i2)

      If V(V11d,V12d), then I1d(V)<0;

    • (i3)

      If V(V11d,V12d), then I1d(V)>0;

  • (ii)

    If α(α3,α*), then Δ>0, and there exist two critical potentials V13d and V14d (assuming V13d<V14d for convenience) such that

    • (i1)

      If V=V13d or V=V14d, then I1d(V)=0;

    • (i2)

      If V(V13d,V14d), then I1d(V)>0;

    • (i3)

      If V(V13d,V14d), then I1d(V)<0;

  • (iii)

    If α(α*,α1), then Δ<0, and hence I1d(V)<0;

  • (iv)

    If α(α1,α4), then Δ<0, and there exists a unique β1>α such that I1d(V)<0 for β(α,β1) and I1d(V)>0 for β(β1,1);

  • (v)

    If α(α4,1), then Δ<0, and hence I1d(V)>0.

Proof. 

It is clear that Δ has the same sign as that of Δ1. For 1<t<2, one has

limβαΔ1=0,limβαΔ1=0,limβαΔ1=2z12(t1)2(σρ)2(z1z2)2ω16(α;1,1)ln4tg4(α).

From Lemma 4, we can easily obtain the sign of limβαΔ1, and hence know the sign of Δ1. □

Remark 2.

In Theorem 3, the result established further depends on the order of some critical values related to channel geometry, α*,α1,α3 and α4. We demonstrate that the order is not unique, which further depends on the nonlinear interaction between other system parameters, particularly, a,b, the jumping points of the permanent charge, and L1,R1, the boundary concentrations. However, similar result should be obtained. Moreover, the result stated in Theorem 3 indicates that under different conditions on the channel geometry, the small positive permanent charge Q0 can either enhance the current I0d(V;σ,ρ) or reduce it. Taking the statement (i) as an example, for α(0,α*) with V11d<V12d, one has the small permanent charge Q0 enhances I0d(V;σ,ρ) for V(,V11d)(V12d,), while reduces it for V(V11d,V12d). Furthermore, the result stated in Theorem 2 provides an efficient way to adjust the effects from the leading term I1d that contains small permanent charge.

3.3. Numerical Simulations

In this part, numerical simulations are performed to provide more intuitive illustrations of some analytical results. To be specific, we numerically identify the critical potentials V01d,V11d,V12d and V1c, which characterized the effects caused by the appearance of boundary layers. To further illustrate the boundary layer effects on ionic flows, we also numerically obtain the zeroth-order (respectively, the first-order) I–V relations in small positive Q0 without and with boundary layers, respectively. Corresponding critical potentials for each setup are identified, from which one is able to observe the effects on ionic flows from boundary layers clearly.

To get started, we rewrite the system (7) and (8) as a system of first-order ordinary differential equations. Upon introducing u=εddxϕ, one has

εddxϕ=u,εh(x)ddx(h(x)u)=z1c1z2c2Q(x),εddxc1=z1c1uεJ1h(x),εddxc2=z2c2uεJ2h(x),ddxJ1=ddxJ2=0, (23)

with boundary conditions

ϕ(0)=V,ck(0)=Lk;ϕ(1)=0,ck(1)=Rk,k=1,2. (24)

In our simulations to system (23) and (24), we take z1=z2=1,L1=12,R1=8,ε=0.01,Q0=0.008,a=0.4,b=0.48, D1=2.032,D2=1.334,

Q(x)=0,0<x<a,Q0,a<x<b,0,b<x<1,andh(x)=πx+r0+a2,0x<a,πr02,ax<b,πx+r0b2,bx<1.

We comment that the choice of h(x) is based on the fact that the ion channel is cylinder-like, and the variable cross-section area is chosen to reflect the fact that the channel is not uniform and much narrower in the neck (0.4<x<0.48) than other regions ([11]). We further take r0=0.5 and the function h(x) is then continuous at the jumping points a=0.4 and b=0.48. Different models for h(x) may be chosen, and similar numerical results should be obtained.

Our numerical simulations show that:

  • (A)

    The term I0d(V) is increasing in the potential V, and there exists a unique zero V01d such that I0d(V)>0 for V>V01d while I0d(V)<0 for V<V01d. This is consistent with the first statement in Theorem 1 (see the left figure in Figure 1);

  • (B)

    The term I1d(V), as a quadratic function, under our setup, it is concave up with two zeros V11d and V12d. At V1c, the critical point, I1d(V) attains its global minimum. Furthermore, I1d(V)>0 (respectively, I1d(V)<0) for V(,V11d)(V12d,) (respectively, V(V11d,V12d)); I1d(V) is increasing for V>V1c while it is decreasing for V<V1c. The numerical results are consistent with the first statement in Theorem 2 and Theorem 3, respectively (see the right figure in Figure 1).

Figure 1.

Figure 1

Numerical simulations for effects on I–V relations from boundary layers with small positive permanent charge.

To further illustrate the boundary layer effects on the I–V relations, we also performed numerical simulations to the system with electroneutrality boundary concentration conditions (no boundary layers, the left figures in both Figure 2 and Figure 3) and relaxed electroneutrality boundary conditions (appearance of boundary layers, the right figures in both Figure 2 and Figure 3), respectively. In each setup, the corresponding critical potentials are identified. To be specific, V01EN,V11EN and V12EN are the critical potentials detected under electroneutrality boundary conditions, while V01bd,V11bd and V12bd are the ones with boundary layers. From the numerical simulations, one observes V01EN<V01bd,V11EN>V11bd and V12EN>V12bd. The observation indicates the important role played by the boundary layers. We take I0(V) as an example. For many studies on PNP type models, electroneutrality boundary conditions are applied, based on our numerical result, this means I0(V;1,1)>0 for V>V01EN. However, if the boundary layers are considered, I0(V;σ,ρ)<0 for V01EN<V<V01bd, even for (σ,ρ)(1,1). The dynamics of ionic flows are totally different.

Figure 2.

Figure 2

Numerical simulations of I0(V), the zeroth-order I–V relations in Q0 for two different setups. The left figure is under electroneutrality boundary conditions, while the right one is with boundary layers.

Figure 3.

Figure 3

Numerical simulations of I1(V), the first-order I–V relations in Q0 for two different setups. The left figure is under electroneutrality boundary conditions, while the right one is with boundary layers.

Remark 3.

For our numerical simulation, we only considered the case with D1>D2. Interested readers can follow our argument to consider the case with D1<D2.

4. Concluding Remarks

We study a one-dimensional steady-state Poisson–Nernst–Planck system with two oppositely charged ion species and small but nonzero permanent charges. The main purpose is to understand the problem from the mathematical point of view, which should provide some insights into related studies of ion channel problems. Particularly, we focus on the qualitative properties of the I–V relations with boundary layers due to the violation of the electroneutrality boundary conditions, which are studied from two directions:

  • (i)

    Boundary layer effects on the zeroth-order (in Q0) I–V relations in terms of the function I0d(V;σ,ρ);

  • (ii)

    Boundary layer effects on the first-order (in Q0) I–V relations in terms of the function I1d(V;σ,ρ).

Detailed analysis along each direction is provided, which includes the signs of I0d(V;σ,ρ) and I1d(V;σ,ρ) and their monotonicity. From the study, one can better understand the mechanism of ionic flows through membrane channels, particularly the internal dynamics of ionic flows, which are non-intuitive and cannot be detected by current technology. Critical potentials that balance the small permanent charge effects on the I–V relations are identified, and their critical roles played in the study of ionic flow properties are characterized. Numerical simulations are performed to provide more intuitive illustrations of the analytical results, and they are consistent. Among others, we find

  • (I)

    The monotonicity of I0d depends sensitively on the parameter t defined by L1/R1 and the boundary layers through the parameters σ and ρ;

  • (II)

    The sign of I1d depends sensitively on the interplays among system parameters, particularly, the parameter t defined by the ratio L1/R1, and the parameter α=H(a)/H(1) representing the channel geometry, while the monotonicity of I1d is only sensitive on α.

Finally, we comment that the setup in this work is relatively simple, and the study in this work is the first step in the analysis of more realistic models. The simple model considered allows us to obtain a more explicit expression of the I–V relations in terms of physical parameters of the problem so that we are able to extract concrete information of the effects from boundary layers and small but nonzero permanent charges. Moreover, the analysis in this simpler setting provides further understanding of the qualitative properties of the I–V relations through membrane channels, and detailed characterization of the nonlinear interplay among different system parameters. The critical potentials identified in this work are critical for one to observe different ionic flow properties through membrane channels. More importantly, some of them can be approximated experimentally.

Author Contributions

Conceptualization, M.Z.; formal analysis, Y.W. and M.Z.; Methodology, M.Z.; writing—original draft preparattion, Y.W. and L.Z.; writing—review and editing, L.Z. and M.Z.; supervision, M.Z. All authors have read and agreed to the published version of the manuscript.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Not applicable.

Conflicts of Interest

The authors declare no conflict of interest.

Funding Statement

This research was funded by Simons Foundation (No. 628308) and NSF of China (No. 12172199).

Footnotes

Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.

References

  • 1.Eisenberg B. Crowded charges in ion channels. In: Rice S.A., editor. Advances in Chemical Physics. John Wiley & Sons; Hoboken, NJ, USA: 2011. pp. 77–223. [Google Scholar]
  • 2.Gillespie D. Ph.D. Thesis. Rush University at Chicago; Chicago, IL, USA: 1999. A singular perturbation analysis of the Poisson-Nernst-Planck system: Applications to Ionic Channels. [Google Scholar]
  • 3.Eisenberg B. Ions in Fluctuating Channels: Transistors Alive. Fluct. Noise Lett. 2012;11:76–96. doi: 10.1142/S0219477512400019. [DOI] [Google Scholar]
  • 4.Dworakowska B., Dolowy K. Ion channels-related diseases. Acta Biochim. Pol. 2000;47:685–703. doi: 10.18388/abp.2000_3989. [DOI] [PubMed] [Google Scholar]
  • 5.Bates P.W., Chen J., Zhang M. Dynamics of ionic flows via Poisson-Nernst-Planck systems with local hard-sphere potentials: Competition between cations. Math. Biosci. Eng. 2020;17:3736–3766. doi: 10.3934/mbe.2020210. [DOI] [PubMed] [Google Scholar]
  • 6.Bates P.W., Jia Y., Lin G., Lu H., Zhang M. Individual flux study via steady-state Poisson-Nernst-Planck systems: Effects from boundary conditions. SIAM J. Appl. Dyn. Syst. 2017;16:410–430. doi: 10.1137/16M1071523. [DOI] [Google Scholar]
  • 7.Bates P.W., Wen Z., Zhang M. Small permanent charge effects on individual fluxes via Poisson-Nernst-Planck models with multiple cations. J. Nonlinear Sci. 2021;31:1–62. doi: 10.1007/s00332-021-09715-3. [DOI] [Google Scholar]
  • 8.Eisenberg B., Liu W. Poisson-Nernst-Planck systems for ion channels with permanent charges. SIAM J. Math. Anal. 2007;38:1932–1966. doi: 10.1137/060657480. [DOI] [Google Scholar]
  • 9.Eisenberg B., Liu W., Xu H. Reversal charge and reversal potential: Case studies via classical Poisson-Nernst-Planck models. Nonlinearity. 2015;28:103–128. doi: 10.1088/0951-7715/28/1/103. [DOI] [Google Scholar]
  • 10.Ji S., Liu W. Flux ratios and channel structures. J. Dyn. Diff. Equ. 2019;31:1141–1183. doi: 10.1007/s10884-017-9607-1. [DOI] [Google Scholar]
  • 11.Ji S., Liu W., Zhang M. Effects of (small) permanent charges and channel geometry on ionic flows via classical Poisson-Nernst-Planck models. SIAM J. Appl. Math. 2015;75:114–135. doi: 10.1137/140992527. [DOI] [Google Scholar]
  • 12.Lin G., Liu W., Yi Y., Zhang M. Poisson-Nernst-Planck systems for ion flow with density functional theory for local hard-sphere potential. SIAM J. Appl. Dyn. Syst. 2013;12:1613–1648. doi: 10.1137/120904056. [DOI] [Google Scholar]
  • 13.Liu W. Geometric singular perturbation approach to steady-state Poisson-Nernst-Planck systems. SIAM J. Appl. Math. 2005;65:754–766. doi: 10.1137/S0036139903420931. [DOI] [Google Scholar]
  • 14.Liu P., Ji X., Xu Z. Modified Poisson-Nernst-Planck model with accurate Coulomb correlation in variable media. SIAM J. Appl. Math. 2018;78:226–245. doi: 10.1137/16M110383X. [DOI] [Google Scholar]
  • 15.Liu W., Xu H. A complete analysis of a classical Poisson-Nernst-Planck model for ionic flow. J. Differ. Equ. 2015;258:1192–1228. doi: 10.1016/j.jde.2014.10.015. [DOI] [Google Scholar]
  • 16.Ma M., Xu Z., Zhang L. Modified Poisson-Nernst-Planck model with accurate Coulomb and hard-sphere correlations. SIAM J. Appl. Math. 2021;81:1645–1667. doi: 10.1137/19M1310098. [DOI] [Google Scholar]
  • 17.Mofidi H., Eisenberg B., Liu W. Effects of Diffusion Coefficients and Permanent Charge on Reversal Potentials in Ionic Channels. Entropy. 2020;22:325. doi: 10.3390/e22030325. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18.Park J.-K., Jerome J.W. Qualitative properties of steady-state Poisson-Nernst-Planck systems: Mathematical study. SIAM J. Appl. Math. 1997;57:609–630. doi: 10.1137/S0036139995279809. [DOI] [Google Scholar]
  • 19.Song Z., Cao X., Horng T.L., Huang H. Selectivity of the KcsA potassium channel: Analysis and computation. Phys. Rev. E. 2019;100:022406. doi: 10.1103/PhysRevE.100.022406. [DOI] [PubMed] [Google Scholar]
  • 20.Song Z., Cao X., Huang H. Electroneutral models for dynamic Poisson-Nernst-Planck system. Phys. Rev. E. 2018;97:012411. doi: 10.1103/PhysRevE.97.012411. [DOI] [PubMed] [Google Scholar]
  • 21.Song Z., Cao X., Huang H. Electroneutral models for a multidimensional dynamic Poisson-Nernst-Planck systems. Phys. Rev. E. 2018;98:032404. doi: 10.1103/PhysRevE.98.032404. [DOI] [PubMed] [Google Scholar]
  • 22.Wen Z., Zhang L., Zhang M. Dynamics of classical Poisson-Nernst-Planck systems with multiple cations and boundary layers. J. Dyn. Diff. Equ. 2021;33:211–234. doi: 10.1007/s10884-020-09861-4. [DOI] [Google Scholar]
  • 23.Zhang L., Eisenberg B., Liu W. An effect of large permanent charge: Decreasing flux with increasing transmembrane potential. Eur. Phys. J. Spec. Top. 2019;227:2575–2601. doi: 10.1140/epjst/e2019-700134-7. [DOI] [Google Scholar]
  • 24.Zhang M. Competition between cations via Poisson-Nernst-Planck systems with nonzero but small permanent charges. Membranes. 2021;11:236. doi: 10.3390/membranes11040236. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Zhang L., Liu W. Effects of large permanent charges on ionic flows via Poisson-Nernst-Planck models. SIAM J. Appl. Dyn. Syst. 2020;19:1993–2029. doi: 10.1137/19M1289443. [DOI] [Google Scholar]
  • 26.Liu W. One-dimensional steady-state Poisson-Nernst-Planck systems for ion channels with multiple ion species. J. Diff. Equ. 2009;246:428–451. doi: 10.1016/j.jde.2008.09.010. [DOI] [Google Scholar]
  • 27.Eisenberg R.S. From Structure to Function in Open Ionic Channels. J. Memb. Biol. 1999;171:1–24. doi: 10.1007/s002329900554. [DOI] [PubMed] [Google Scholar]
  • 28.Chen D.P., Eisenberg R.S. Charges, currents and potentials in ionic channels of one conformation. Biophys. J. 1993;64:1405–1421. doi: 10.1016/S0006-3495(93)81507-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29.Eisenberg B. Proteins, Channels, and Crowded Ions. Biophys. Chem. 2003;100:507–517. doi: 10.1016/S0301-4622(02)00302-2. [DOI] [PubMed] [Google Scholar]
  • 30.Gillespie D., Eisenberg R.S. Physical descriptions of experimental selectivity measurements in ion channels. European Biophys. J. 2002;31:454–466. doi: 10.1007/s00249-002-0239-x. [DOI] [PubMed] [Google Scholar]
  • 31.Gillespie D., Nonner W., Eisenberg R.S. Coupling Poisson-Nernst-Planck and density functional theory to calculate ion flux. J. Phys. Condens. Matter. 2002;14:12129–12145. doi: 10.1088/0953-8984/14/46/317. [DOI] [Google Scholar]
  • 32.Henderson L.J. The Fitness of the Environment: An Inquiry Into the Biological Significance of the Properties of Matter. Macmillan; New York, NY, USA: 1927. [Google Scholar]
  • 33.Im W., Roux B. Ion permeation and selectivity of OmpF porin: A theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory. J. Mol. Biol. 2002;322:851–869. doi: 10.1016/S0022-2836(02)00778-7. [DOI] [PubMed] [Google Scholar]
  • 34.Noskov S.Y., Berneche S., Roux B. Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands. Nature. 2004;431:830–834. doi: 10.1038/nature02943. [DOI] [PubMed] [Google Scholar]
  • 35.Noskov S.Y., Roux B. Ion selectivity in potassium channels. Biophys. Chem. 2006;124:279–291. doi: 10.1016/j.bpc.2006.05.033. [DOI] [PubMed] [Google Scholar]
  • 36.Roux B., Allen T.W., Berneche S., Im W. Theoretical and computational models of biological ion channels. Quat. Rev. Biophys. 2004;37:15–103. doi: 10.1017/S0033583504003968. [DOI] [PubMed] [Google Scholar]
  • 37.Barcilon V. Ion flow through narrow membrane channels: Part I. SIAM J. Appl. Math. 1992;52:1391–1404. doi: 10.1137/0152080. [DOI] [Google Scholar]
  • 38.Hyon Y., Eisenberg B., Liu C. A mathematical model for the hard sphere repulsion in ionic solutions. Commun. Math. Sci. 2010;9:459–475. [Google Scholar]
  • 39.Hyon Y., Fonseca J., Eisenberg B., Liu C. A new Poisson-Nernst-Planck equation (PNP-FS-IF) for charge inversion near walls. Biophys. J. 2011;100:578a. doi: 10.1016/j.bpj.2010.12.3342. [DOI] [Google Scholar]
  • 40.Schuss Z., Nadler B., Eisenberg R.S. Derivation of Poisson and Nernst-Planck equations in a bath and channel from a molecular model. Phys. Rev. E. 2001;64:1–14. doi: 10.1103/PhysRevE.64.036116. [DOI] [PubMed] [Google Scholar]
  • 41.Nonner W., Eisenberg R.S. Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type Calcium channels. Biophys. J. 1998;75:1287–1305. doi: 10.1016/S0006-3495(98)74048-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 42.Rouston D.J. Bipolar Semiconductor Devices. McGraw-Hill; New York, NY, USA: 1990. [Google Scholar]
  • 43.Warner R.M., Jr. Microelectronics: Its unusual origin and personality. IEEE Trans. Electron Devices. 2001;48:2457–2467. doi: 10.1109/16.960368. [DOI] [Google Scholar]
  • 44.Boda D., Busath D., Eisenberg B., Henderson D., Nonner W. Monte Carlo simulations of ion selectivity in a biological Na+ channel: Charge-space competition. Phys. Chem. Chem. Phys. 2002;4:5154–5160. doi: 10.1039/B203686J. [DOI] [Google Scholar]
  • 45.Gillespie D., Nonner W., Eisenberg R.S. Density functional theory of charged hard-sphere fluids. Phys. Rev. E. 2003;68:0313503. doi: 10.1103/PhysRevE.68.031503. [DOI] [PubMed] [Google Scholar]
  • 46.Abaid N., Eisenberg R.S., Liu W. Asymptotic expansions of I-V relations via a Poisson-Nernst-Planck system. SIAM J. Appl. Dyn. Syst. 2008;7:1507–1526. doi: 10.1137/070691322. [DOI] [Google Scholar]
  • 47.Bates P.W., Liu W., Lu H., Zhang M. Ion size and valence effects on ionic flows via Poisson-Nernst-Planck systems. Commun. Math. Sci. 2017;15:881–901. doi: 10.4310/CMS.2017.v15.n4.a1. [DOI] [Google Scholar]
  • 48.Ji S., Liu W. Poisson-Nernst-Planck Systems for Ion Flow with Density Functional Theory for Hard-Sphere Potential: I-V relations and Critical Potentials. Part I: Analysis. J. Dyn. Diff. Equ. 2012;24:955–983. doi: 10.1007/s10884-012-9277-y. [DOI] [Google Scholar]
  • 49.Jia Y., Liu W., Zhang M. Qualitative properties of ionic flows via Poisson-Nernst-Planck systems with Bikerman’s local hard-sphere potential: Ion size effects. Discrete Contin. Dyn. Syst. Ser. B. 2016;21:1775–1802. doi: 10.3934/dcdsb.2016022. [DOI] [Google Scholar]
  • 50.Liu W., Tu X., Zhang M. Poisson-Nernst-Planck Systems for Ion Flow with Density Functional Theory for Hard-Sphere Potential: I-V relations and Critical Potentials. Part II: Numerics. J. Dyn. Diff. Equ. 2012;24:985–1004. doi: 10.1007/s10884-012-9278-x. [DOI] [Google Scholar]
  • 51.Zhang M. Asymptotic expansions and numerical simulations of I-V relations via a steady-state Poisson-Nernst-Planck system. Rocky Mt. J. Math. 2015;45:1681–1708. doi: 10.1216/RMJ-2015-45-5-1681. [DOI] [Google Scholar]
  • 52.Chen J., Wang Y., Zhang L., Zhang M. Mathematical analysis of Poisson-Nernst-Planck models with permanent charges and boundary layers: Studies on individual fluxes. Nonlinearity. 2021;34:3879–3906. doi: 10.1088/1361-6544/abf33a. [DOI] [Google Scholar]
  • 53.Zhang M. Boundary layer effects on ionic flows via classical Poisson-Nernst-Planck systems. Comput. Math. Biophys. 2018;6:14–27. doi: 10.1515/cmb-2018-0002. [DOI] [Google Scholar]
  • 54.Gillespie D. Energetics of divalent selectivity in a calcium channel: The Ryanodine receptor case study. Biophys. J. 2008;94:1169–1184. doi: 10.1529/biophysj.107.116798. [DOI] [PMC free article] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

Not applicable.


Articles from Membranes are provided here courtesy of Multidisciplinary Digital Publishing Institute (MDPI)

RESOURCES