Abstract
Wearable, mobile, and point-of-care (POC) sensors comprise a rapidly expanding field of devices aimed at improving human health by relaying real-time biometric data such as heart rate and glucose levels. The current scope of what these devices can offer healthcare is limited by their inability to measure biomarkers associated with inflammation, well-being, and disease. Photonic biosensors that integrate sensing elements directly with spectrometers, lasers, and detectors are an attractive approach to enabling POC sensors, with distinct advantages in terms of size, weight, power consumption, and cost. Here, we have demonstrated for the first time the integration of photonic microring resonator biosensors with an on-chip microring filter bank spectrometer for the controlled detection of inflammatory biomarker C-reactive protein (CRP) in serum. We demonstrate that sensor and spectrometer performance is tolerant of temperature variation, as temperature dependence moves in parallel. Finally, we assess the impact of manufacturing variability on the 300 mm wafer scale on the performance of the spectrometer. Taken together, these results suggest that integration of on-chip ring filter bank spectrometers with ring resonator-based biosensors constitutes an attractive approach toward cost-effective integrated sensor development.
Keywords: microring resonators, photonic sensors, filter bank spectrometers, biosensing, AIM Photonics
Laboratory diagnostics have revolutionized modern medicine by improving the diagnosis, prognosis, and treatment of disease. However, state-of-the-art laboratory diagnostics are not suitable for wearable, mobile, or point-of-care (POC) applications because they are large, require skilled operators, and are costly to acquire and maintain. There is substantial interest in developing alternative diagnostic platforms that obviate the limitations of current technologies.1,2 Integrated photonic approaches to biosensing offer clear advantages in size, weight, power, and cost by leveraging the established semiconductor manufacturing infrastructure. Examples of photonic structures used for sensing include ring resonators,3,4 photonic crystals,5−7 and Mach–Zehnder interferometers.8−10
When a device is fully reusable, monolithic integration of components (such as a laser source and detector) decreases size and cost. For biosensing applications, it is desirable to make certain components, such as the signal transducer, single-use and disposable. An open question is whether there is a middle approach, where a transducer and spectrometer may be integrated without significantly increasing cost.
Several approaches to integrated photonic spectrometry have been demonstrated. Miniaturized dispersive systems such as arrayed waveguide gratings (AWGs)11 and Echelle gratings12,13 have been used to scale down traditional free-space optical spectrometer systems. Biosensing with these devices has typically focused on detection of analytes by their Raman or infrared spectral signature.14 While there are examples of sensors integrated with AWGs for biosensing,15,16 one of the challenges with this configuration of the transducer and spectrometer is the disparity between the temperature dependence of the ring resonator and the AWG. Here, we show that integrating ring resonators for sensing with ring filter banks for spectrometry alleviate this concern over divergent temperature dependence.
Spectrometers have been used in a range of applications including spectroscopy to study the spectral features of atoms, molecules, and bulk materials. Here, an integrated filter bank spectrometer is used to monitor the spectral characteristics of an upstream ring resonator that is exposed to the environment for sensing.
In general, spectrometers are optimized for high resolution by increasing channel count and density while decreasing simultaneous activation of adjacent channels. This is critical for identifying the narrow spectral features of molecular Raman signals. However, when the spectral feature is comparatively broad, such as the drop spectrum of an add/drop ring resonator, the resonance wavelength may be identified using fewer, sparsely placed channels (Figure 1). Narrowband filters such as microring filter banks17,18 have been used extensively for spectral analysis and signal processing but, as far as we are aware, have not been integrated with transducers in a biosensing context.
In this paper, we demonstrate this concept for bulk sensing of sucrose solutions and specific detection of C-reactive protein (CRP) in serum at biologically relevant concentrations. To the best of our knowledge, this is the first reported example of such a device and sets the stage for further development of spectrometer-integrated photonic biosensors.
Experimental Techniques
Materials
The C-reactive protein (CRP) and anti-CRP antibody were a gift from Ortho Clinical Diagnostics (Rochester, NY). Antifluorescein (anti-FITC) and fetal bovine serum (FBS) were obtained from Rockland Immunochemicals (Limerick, PA). CRP was diluted in 20% FBS in assay wash buffer (AWB), by volume. AWB is composed of modified phosphate-buffered saline–potassium-free (mPBS), 3 mM EDTA, and 0.01% Tween-20.
Microring Resonators
Modeling of silicon nitride ring waveguides was performed using the finite difference (FD) method in Synopsys OptoDesigner. Silicon nitride waveguides were modeled as 1.5-μm-wide and 220-nm-thick with a refractive index of 1.98, silicon dioxide cladding with refractive index 1.44, and silicon substrate with refractive index of 3.48. Sensing ring waveguides were modeled with an upper water cladding of refractive index 1.32. Once the effective index of the guided mode, bending loss, and substrate loss had been determined by FD, coupled mode theory (CMT) in Synopsys OptoDesigner was used to determine the optimum gap between the bus waveguide and ring resonator. Coupling gaps were designed to achieve broad low-Q sensing ring resonance and narrower high-Q spectrometer ring resonance.
Several sensing ring-coupled spectrometer devices were incorporated onto a larger chip, as shown in Figure 2a, for ease of handling and testing of several designs during a single experiment. A single device or many could be used per chip for a typical use case (i.e., in diagnostics or in a field-deployable biosensor) to either minimize the size and cost or facilitate multiplexing and statistical averaging. Two types of sensing ring-coupled spectrometer devices were designed. The first type, shown in Figure 2a, contained a single add/drop sensing ring upstream of six spectrometer rings. The spectrometer rings share a single bus waveguide and have slightly different circumferences, leading to different resonant wavelengths. This type of device was used for bulk sensing experiments, where the sensing ring resonance changes in response to changing bulk refractive index of the solution above the ring. However, for targeted detection of an analyte, it is desirable to have a second ring to serve as a negative control and enable correction for nonspecific binding and shift due to change in the background refractive index. To accomplish specific biosensing, we designed a device with two sensing rings upstream of the filter bank (Figure 2b). In this case, one ring serves as a negative control while the other is functionalized with capture antibodies specific to the analyte of interest.
Exposed sensing rings were designed with a diameter of 197.270 μm and a coupling gap of 650 nm to yield an FSR of ∼2.2 nm at a wavelength of 1550 nm under aqueous cladding. Oxide-clad spectrometer rings were designed with a diameter of 197.169 μm and a coupling gap of 750 nm to achieve an identical FSR range of ∼2.2 nm.
Photonic Chip Fabrication
The photonic sensor/spectrometers were fabricated via photolithography using a 300 mm wafer process available at AIM Photonics in Albany, New York.19 Fabricated wafers were diced and returned on dicing tape. An image of a diced filter bank die, as received from the dicing vendor, is shown in Figure 2c. A complete description of the AIM Photonics passives MPW format from which our layer stack derives has been reported previously.19
The measured Q-factor of fabricated sensing (aqueous-clad) and spectrometer (oxide-clad) rings was 1.3 × 104 and 2.4 × 105, respectively. As fabricated, the FSR of sensing and spectrometer rings differed by 60 pm, measured as 2.183 and 2.123 nm, respectively.
Photonic Sensor Chip Functionalization
Diced sensor chips were removed from the dicing tape and washed for 15 min in a 1:1 mixture of hydrochloric acid and methanol, then rinsed sequentially in four Petri dishes filled with Nanopure water. Another wash was performed for 15 min in a 3:1 mixture of sulfuric acid and 25% hydrogen peroxide (“piranha” solution; Caution!Piranha solution is highly caustic and reacts violently with organics), rinsed sequentially with Nanopure water in four Petri dishes, and finally dried with nitrogen. Next, the chips were submerged in a solution of 1% (3-triethoxysilyl)propylsuccinic anhydride (Gelest, Morrisville, PA) in anhydrous toluene (freshly distilled over sodium metal under a nitrogen atmosphere) for 40 min and subsequently rinsed in anhydrous toluene for 1 min and dried with nitrogen. The chips were transferred to a 110 °C oven for 30 min to cure the silane layer and then used immediately.
Antibodies were covalently attached to the functionalized chip surface by printing antibody solution directly on the sensing rings using a Scienion SciFLEXARRAYER SX microarrayer (Figure S1b). The probe rings were spotted with approximately 3 nL of anti-CRP at 400 μg/mL in mPBS (pH 7.2), and the control rings received anti-FITC at 600 μg/mL in mPBS (pH 5.8; Figure S1c). These were incubated in the microarrayer at 75% humidity for 30 min before overspotting an identical volume of StabilCoat Plus (Surmodics; Figure S1d). After a subsequent 30 min, the chips were removed from the 75%-humidity arrayer chamber and placed into a small desiccator with fresh desiccant at room temperature for at least 4 h, as the manufacturer suggests. In our hands, coated chips have a shelf life of at least several months.
Microfluidic Assembly
To enable efficient sample delivery to the sensor surface, the device was packaged into a microfluidic assembly (Figure 3). The sensor was surrounded on three sides with silicon substrates to provide a uniform surface that extended several millimeters beyond the chip perimeter. Next, 3M adhesive transfer tape (467MP) was cut with a Silhouette Cameo craft cutter to define a boundary around the exposed sensing rings and to form a sealing layer. On top of that, a second layer of 3M adhesive was cut to define a channel connecting input and output fluidic ports beyond the boundary of the sensor. Finally, a PDMS gasket with polyimide tubing for input and output was aligned to the adhesive channel.
Measurement Apparatus
The measurement apparatus is presented in Figure S2. A tunable laser source was aligned to the PIC microfluidic assembly by maximizing coupling between the waveguides of the PIC and a fiber array with nine single mode SMF-28 fibers on a 127-μm pitch (OZ Optics). Light from the tunable laser source (Keysight N7745A) was routed through a polarization controller (Thorlabs FPC561) to ensure linearly polarized light was properly oriented for the TE mode of the waveguide. Output light captured by fibers of the same fiber array was routed to each of the eight channels of the optical power meter (Keysight N7745A). The tunable laser and optical power meter were connected to a computer via a GPIB interface and controlled using Keysight’s Photonic Application Suite. Optical alignment was assisted by a dual camera VIS/IR microscope consisting of a 5× IR objective lens (Mitutoyo Plan Apo NIR 46-402) fitted to a 6.5× zoom lens with coaxial illumination (Thorlabs MVL6X3Z) and a dual-camera mount (Thorlabs 2SCM1-DC) with a long-pass dichroic mirror (Thorlabs DMLP950R) to pass IR light to the IR camera (WiDy InGaAs 650) and reflect visible light to the CMOS camera (Thorlabs DCC1645C).
Spectral Measurements and Sample Addition
Once the device was packaged in the microfluidic assembly and aligned, 80 nm spectra were recorded continuously at 1 pm resolution from 1500 to 1580 nm. Each scan took about 8 s to complete. All 8 channels of the optical power meter were monitored simultaneously using the insertion loss interface of the Keysight Photonic Application suite. Example spectra are shown in Figure 4.
Samples were introduced to the sensor surface using a Fluigent EZ system with M-switch (North Chelmsford, MA) at a flow rate of 15 μL/min. For bulk sensing experiments to determine the refractive index sensitivity of the devices, sucrose solutions with concentrations ranging from 0 to 10% (v/v) were sequentially introduced, with each solution allowed to flow until the resonance stabilized, and the spectra recorded. For biosensing experiments, the 20% FBS/AWB solution was pumped over the surface for 15 min to remove the StabilCoat Plus from sensing rings and block the ancillary surfaces of the sensor and microfluidic channel. Subsequently, increasing concentrations of CRP diluted in 20% FBS/AWB were pumped through the sensor for 15 min at a time, and the spectra wererecorded. The observed resonance wavelengths of the sensing rings generally stabilized after ∼10 min.
Analysis of Spectra
Collected spectra were processed automatically through a custom Python script, modified from that which was described previously.3 The output spectra for each channel were collected simultaneously and stored in the same file. Minor modifications were made to the pipeline to accommodate multiple output channels. Briefly, spectral features including peak location, peak height, quality factor, chi-squared values, and peak fitting parameters are extracted by fitting the peak features with Lorentzian functions. As shown in Figure 4b, the transmitted T1 signal alone was sufficient to determine the resonance wavelength of the sensing ring. However, correlating the transmitted power with the tunable laser wavelength during a scan requires synchronizing the laser and detectors, adding expense and complexity to the apparatus. This requirement was obviated by instead, recording the maximum power transmitted through each of the spectrometer channels during a scan. Then, the maximum power and wavelength of the spectrometer channels were used to determine the resonance wavelength of the sensing ring.
Experimental Results
Bulk Sensing Sucrose Solutions
To characterize the bulk sensitivity of unfunctionalized devices, several different concentrations of sucrose solutions were pumped sequentially over the surface of a single-sensing ring spectrometer. Since the refractive indices of these solutions are well-known, the refractive index sensitivity of the device can be reported in terms of shift per refractive index unit (nm/RIU). Typical spectra from a bulk sensing experiment are shown in Figure 5. When the concentration of sucrose increases from 0 to 10%, the resonance shifts over 2.4 nm, exceeding the FSR of the sensing and spectrometer rings. The average sensitivity of 152 devices measured from the redshift of the T1 resonance was 179.7 ± 36 nm/RIU.
At intermediate sucrose concentrations over this range, the intensity measured at each spectrometer channel is observed to increase with proximity to the resonance wavelength of the sensing ring. Whereas resolution in spectrometers with narrow channel spacing is optimized by decreasing interchannel crosstalk, in a spectrometer with sparse channel spacing and a broad source that spans several adjacent channels, identification of the central wavelength is facilitated by assessing the relative power transmitted to adjacent channels.
Controlled Biosensing of C-Reactive Protein (CRP)
CRP is a serum cytokine that has been indicated as a biomarker of inflammation and disease. FDA-approved clinical assays for CRP are routinely used.20 Normal levels of CRP in healthy individuals are <3 ng/mL, with values rising to more than 500 ng/mL in acute inflammation.21 As such, it is an ideal analyte for testing these devices in the surface-sensing regime with a clinically relevant biomarker. The layout of a dual-ring sensor integrated with a filter bank spectrometer is presented in Figure 6a. Of the nine waveguides at the bottom of the device, the second serves as the input and is coupled to two sensing rings as a bus waveguide. Transmitted light then returns to the first waveguide T1. Light that couples through one of the sensing rings is dropped to a second bus waveguide with six spectrometer rings buried in the oxide cladding. The resonance wavelengths of these rings are designed to be separated by 300 pm to uniformly span their free spectral range of ∼2.2 nm. As fabricated, the average separation for this device was 336 pm with a standard deviation of 19 pm. Light that is resonant with a spectrometer ring drops to its corresponding output waveguide, labeled 1 through 6. Finally, light that is transmitted beyond the filter bank spectrometer is measured from the waveguide labeled T2. To measure the specific binding of C-reactive protein (CRP), one sensing ring was functionalized with the anti-CRP antibody as a capture probe, while the other sensing ring was functionalized with the anti-FITC antibody as a negative control.
Typical biosensing spectra are presented in Figure 6b. Here, spectra measured for 4 ng/mL CRP are overlaid with the spectra for 20 ng/mL CRP, to show that the spectrometer can be used to resolve a 5-fold difference in concentration. The wavelength of the tunable laser source is scanned, and the output power (reported as loss (dB)) is measured for all output channels of the device. The spectrometer channels appear at the bottom of the plot uniformly distributed from green to gray. There is a negligible change in the location of the anti-FITC resonance in response to an increasing concentration of CRP, and as such there is very little change in the output power of the first spectrometer channel (the closest match to the control anti-FITC resonance). However, a readily discernible 30 nW decrease in power measured from the third spectrometer channel is observed for two sequential concentrations of CRP (Figure 6c).
Spectra for CRP diluted in 20% FBS/AWB at concentrations spanning 0–500 ng/mL are overlaid in Figure 6c. As the sensing resonance moves from left to right across the third spectrometer channel, the normalized power observed increases and subsequently decreases, as shown in Figure 6d. The observed power is inversely proportional to the separation between the resonance wavelength of the sensing ring and the center wavelength of the spectrometer ring. This relationship is used to estimate the resonance wavelength of the sensing ring from the measured output power of the spectrometer channel. With the response for both the anti-CRP and anti-FITC control ring measured on separate channels, the FITC-corrected shift is calculated by subtracting the FITC shift from the CRP shift, to correct for nonspecific binding and bulk effects. The result is the dose–response curve presented in Figure 6e. The CRP-dependent redshift in resonance wavelengths for anti-CRP and anti-FITC rings was also recorded for T1 for comparison with the ring filter bank spectrometer output. Differences between the T1 and spectrometer output may be attributed to error in the Lorentzian fit of resonance spectra.
Temperature Dependence and Manufacturing Variability
There are two potential concerns with regard to the use of microring filter banks for biosensing. First, since the resonant condition of microring resonators is well-known to have a temperature dependence, questions about the need for rigorous temperature control of the device might arise. This turns out to not be an issue: since the microrings used for sensing and those constituting the microring filter bank are made of the same material and are on the same chip, their sensitivity to thermal fluctuations should be quite similar if not identical. Thus, as temperature fluctuates, the resonance wavelengths of the sensors and spectrometer move together, and the observed power on a spectrometer channel is unaffected. The spectrum presented in Figure 7a demonstrates that the resonance of the sensing rings and spectrometer rings move together over a 20° range. The deviation between the two is less than 2 pm per degree Celsius (Figure 7b).
The second potential concern about this approach concerns the sensitivity of the design to manufacturing variability. Fabrication variations across the wafer, both stochastic and deterministic, may lead to unacceptable device properties. To test this, we acquired microring filter bank spectra from 36 devices taken from separate reticles on a single wafer. Modest variation in the refractive index of the silicon nitride may lead to dilation and contraction of the spectrometer channel spacing from one die to the next. For example, spectra presented in Figure 8a exhibit modest contraction leading to a larger gap between the final spectrometer channel (gray) and the first (green). This level of variation may be accommodated as there is not significant overlap between what should be independent channels. However, dice exhibiting spectra similar to those shown Figure 8b are unacceptable because the channel order and spacing are irregular. Of the 36 dice sampled, we judged 17 (47%) as exhibiting sufficient variation as to be unusable, and they were almost exclusively close to the perimeter of the wafer (Figure 8c).
Discussion
In general, spectrometers are optimized for high resolution by increasing channel count and density while decreasing interchannel crosstalk. However, we have shown that a spectrometer with few, sparsely spaced channels can be used to measure the shift of an upstream sensing ring resonator. The bulk refractive index sensitivity (179.7 ± 36 nm/RIU) observed for these devices is state of the art for silicon nitride. For biosensing, CRP was detected in diluted serum at 32 pg/mL.
One of the challenges of integrating photonic sensors with spectrometers is matching the temperature dependence of each component. Here, we have shown agreement between the temperature dependence of the sensing rings and the integrated filter bank spectrometers, with a shift of less than 2 pm per degree Celsius over a 20° range. As with all photonic technologies there continues to be a need to improve fabrication yield. We anticipate that the implementation of the design for manufacturing (DFM) methodology coupled with a better understanding of wafer-scale variation in the silicon nitride refractive index will help in this regard. Additionally, since the sparse sampling approach can tolerate limited random variation of the center wavelengths of spectrometer rings, one approach to avoid overlapping channels that lead to undersampling of the sensing ring is to increase the density of spectrometer channel spacing. In this scenario, the device can be designed to tolerate one or more overlapping rings.
We also anticipate several opportunities for improving performance. In the current design of a double sensing ring-coupled filter bank, the two sensing rings are not independent. As can be seen in typical spectra, the peak intensity of the second ring is less than that of the first ring because it is downstream. This limits the ability to resolve small changes in resonance shift, because the corresponding change in spectrometer power may not be significant enough to distinguish from the noise. This issue could be resolved either by decreasing the coupling gap of the second ring to compensate for the disparity or by separating the inputs for both sensing rings. The latter approach could be accomplished by inserting a two-way splitter between the edge coupled input and the sensing rings. Of course, one could also increase confidence in the measurement via use of multiple sensor/spectrometer instances on the same chip or use multiple devices for multianalyte (multiplex) sensing. This would increase the cost of the device due to a larger chip footprint but may be warranted in some applications.
A limited amount of control can be demonstrated over setting the bandwidth of the spectrometer channel. The channel width, as measured by the full width at half maximum (fwhm), can be adjusted between ∼45 pm and ∼15 pm by increasing the coupling gap. However, a trade-off exists where increasing bandwidth decreases resolution. Varying the coupling gaps of upstream sensing rings and downstream spectrometer rings in tandem can optimize sampling of the sensing ring spectra.
There is also opportunity to split the optical signal downstream of sensing rings to address several branches of spectrometer filter rings. Such a configuration enables not only an increase of the surface density of the spectrometer but also enables an increase in ring count while decreasing the likelihood of downstream channels interfering with upstream channels in strongly coupled configurations.
Although the current footprint of a six-channel device is 1 mm × 2 mm, more efficient routing of waveguides would decrease this by half. The footprint could be decreased further by decreasing the radii of the spectrometer and sensing rings. However, this will also increase the FSR, and additional channels may be required to span the range between successive resonances.
In summary, here we have presented the integration of sensor and spectrometer microring resonators for the detection of inflammatory biomarker CRP in serum. We have shown that this configuration is tolerant to temperature variation but is also subject to fabrication variability inherent to wafer-scale photolithography. The results shown here suggest that integration of ring resonator-based biosensors with on-chip ring filter bank spectrometers represents a promising approach to inexpensive integrated sensor development.
Glossary
Abbreviations
- AIM
American Institute for Manufacturing
- AWB
Assay Wash Buffer
- AWG
Arrayed Waveguide Grating
- CMT
Coupled Mode Theory
- CRP
C-Reactive Protein
- DFM
Design For Manufacturing
- FBS
Fetal Bovine Serum
- FD
Finite Difference
- FITC
Fluorescein
- FSR
Free-Spectral Range
- fwhm
Full-Width at Half-Maximum
- mPBS
Modified Phosphate-Buffered Saline
- MPW
Multi-Project Wafer
- PDMS
Polydimethylsiloxane
- POC
Point-of-Care
- RIU
Refractive Index Units
Supporting Information Available
The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acssensors.2c02276.
Layout and photomicrographs of double sensing ring-coupled filter banks; schematic of the full measurement apparatus (PDF)
Author Contributions
The manuscript was written through contributions of all authors. All authors have given approval to the final version of the manuscript. M.B.: Conceptualization, methodology, software, investigation, writing–original draft preparation, visualization. J.N.B.: Investigation, validation, formal analysis, writing–review and editing. J.B.: Investigation, validation, formal analysis, writing–review and editing. B.M.: Conceptualization, writing–review and editing, supervision, funding acquisition.
This work was supported by the U.S. Department of Defense under AIM Photonics, Air Force Contract FA8650-15-2-5220. The views and opinions expressed in this paper are those of the authors and do not reflect the official policy or position of the United States Air Force, Department of Defense, or the U.S. Government.
The authors declare no competing financial interest.
Supplementary Material
References
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