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. Author manuscript; available in PMC: 2024 Feb 1.
Published in final edited form as: J Magn Reson. 2023 Jan 9;347:107366. doi: 10.1016/j.jmr.2023.107366

Site-based Description of R1ρ Relaxation in Local Reference Frames

Hans Koss a, Timothy Crawley a, Arthur G Palmer III a,*
PMCID: PMC9976581  NIHMSID: NIHMS1865493  PMID: 36641894

Abstract

Nuclear magnetic spin relaxation in the presence of an applied radiofrequency field depends critically on chemical exchange processes that transfer nuclear spins between chemical or conformational environments with distinct resonance frequencies. Characterization of chemical exchange processes in R1ρ relaxation dispersion, CEST, and DEST experiments provides powerful insights into chemical and conformational kinetics of biological macromolecules. The present work reformulates expressions for magnetization evolution and the R1ρ relaxation rate constant by focussing on the orientations of the tilted rotating frames of reference for magnetization components in different sites, by treating the spin-locking field strength as a perturbation to free-precession evolution, and by applying the Homotopy Analysis and Laplace transform methods to approximate solutions to the Bloch-McConnell equations. The results provide an expression for R1ρ that is invariant to the topology of the kinetic scheme, an approximate equation for evolution of spin-locked z-magnetization, and an approach for effective simplification of chemical exchange topologies for 2- and N-site chemical exchange processes. The theoretical approach also provides an accurate approximation for relaxation during a constant-amplitude radiofrequency field in the absence of exchange.

Keywords: CEST and relaxation dispersion, Chemical and conformational exchange, NMR spectroscopy, Nuclear magnetic spin relaxation, Protein and nucleic acid dynamics, Rotating-frame relaxation

Graphical Abstract

graphic file with name nihms-1865493-f0001.jpg

Introduction

The family of techniques based on nuclear spin relaxation in the presence of a spin-locking radiofrequency (rf) field, including R1ρ, CEST, and DEST methods, enable highly detailed characterization of chemical exchange kinetic processes in nuclear magnetic resonance (NMR) spectroscopy [1, 2, 3]. When chemical exchange is fast on the chemical shift time scale, Bloch-Wangsness-Redfield (BWR) theory can be used to obtain analytical expressions for the R1ρ relaxation rate constant for arbitrary numbers of exchanging sites N ≥ 2 (in the following, states or sites are used interchangeably) [4, 5, 6]. Expressions for R1ρ applicable to all exchange time scales were first obtained for 2-site exchange by Trott and Palmer [7]. The initial results subsequently were extended to higher accuracy [8, 9], more general conditions [10], and N-site (N > 2) kinetic schemes [11, 12, 13]. As evident in the first 2-site [7] and N-site results [11], the R1ρ relaxation rate constant is uniquely sensitive to the resonance frequency offsets of minor (sparsely populated) chemical or conformational states that cannot be directly observed in first-order NMR spectra. This property of the relaxation of spin-locked magnetization enables characterization of structure and dynamics of sparsely populated states of biological macromolecules using R1ρ, CEST, and DEST experiments [14, 2, 15, 16, 17, 18, 19, 20, 21].

The present work is concerned primarily with the temporal evolution of the spin-locked z-magnetization in the tilted rotating frame subject to N-site chemical exchange, rather than only the R1ρ relaxation rate constant, which is usually defined as the least negative real eigenvalue of the Bloch-McConnell evolution matrix [7]. This analysis focuses on the role of the differences in tilt angles for spin-locked magnetization components in different chemical or conformational states [2]. The Homotopy Analysis Method (HAM) [22] is used to obtain approximate solutions for the Bloch-McConnell equations that are highly accurate when chemical exchange is intermediate-to-slow. The Laplace transform approach developed by Abergel and coworkers [8, 5, 6] also is used to obtain an expression for the long-time evolution of the spin-locked z-magnetization that only requires operations on N × N matrices.

Theory

The following discussion focuses on 2-site exchange; however, the extension to N > 2 sites is conceptually straightforward. Indeed, the following analysis leads to expressions for N-site exchange that have the same formal structure as expressions for 2-site exchange, in constrast to earlier derivations [11, 12, 13]. Initially, the relaxation of isolated spin-1/2 magnetization is treated in a spherical basis in the tilted rotating frame of reference. This treatment also leads to new perspectives for magnetization in the laboratory Cartesian frame of reference.

The Bloch-McConnell equation in the Cartesian rotating frame of reference is given by:

ddt[MA(t)MB(t)]={[LA00LB]+K}[MA(t)MB(t)]+[R1AMA0R1BMB0] (1)

In this equation,

LX=[R2XΩX0ΩXR2Xω10ω1R1X] (2)

is the Bloch evolution matrix, MX(t)=[MxX(t),MyX(t),MzX(t)]T is the Cartesian magnetization vector, MX0=[0,0,MzX0]T is the corresponding equilbrium magnetization vector, R1X and R2X are the relaxation rate constants in the absence of exchange, and ΩX is the resonance offset frequency for a spin in site X = {A, B}. The radio-frequency (rf) field has frequency ωrf, amplitude (Rabi frequency) ω1, and is assumed to have x-phase. The kinetic rate matrix is given by:

K=[k12k21k12k21]I (3)

in which the forward and reverse kinetic rate constants are k12 and k21, respectively. Herein, 0 and I are the empty and identity matrices with conformal dimensions, respectively. In the following, the above equation is modified to:

ddt[ΔMA(t)ΔMB(t)]={[LA00LB]+K}[ΔMA(t)ΔMB(t)] (4)

by defining, ΔMX(t)=MX(t)MXss in which:

[MAssMBss]={[LA00LB]+K}1[R1AMA0R1BMB0] (5)

are the steady-state values of the magnetization components.

The Bloch-McConnell equation is transformed in three steps. The first transformation symmetrizes the kinetic matrix using the following matrix:

S=[pA00pB]I (6)

in which pA = k21/kex is the equilibrium population of site A, pB = k12/kex is the equilibrium population of site B, and kex = k12 + k21. The kinetic matrix is transformed to:

S1KS=[k12k12k21k12k21k21]I (7)

but the Bloch evolution matrices are unaffected.

The second transformation rotates the Bloch evolution matrix for each site to the local tilted rotating frame using the matrix:

R=[Ry(θA)00Ry(θB)] (8)

in which:

Ry(θ)=[cosθ0sinθ010sinθ0cosθ] (9)

The transformed Bloch evolution matrix is given by:

Ry1(θX)LXRy(θX)=[(R2Xcos2θX+R1Xsin2θX)ωXΔRX2sin(2θX)ωXR2X0ΔRX2sin(2θX)0(R2Xsin2θX+R1Xcos2θX)] (10)

in which θX = tan−1(ω1X) is the tilt angle, ωX=(ω12+ΩX2)12 is the effective field in the rotating frame, and ΔRX = R2XR1X for magnetization in site X. The kinetic matrix becomes:

R1S1KSR=[k12Ik12k21Ry(Δθ)k12k21Ry(Δθ)k21I] (11)

in which Δθ = θBθA.

The last transformation converts the Cartesian basis into the spherical basis using the matrix:

U=[u00u] (12)

in which:

u=12[110ii0002] (13)

The Bloch evolution matrix becomes:

L¯X=u1Ry1(θX)LXRy(θX)u=LX0+DX (14)

in which:

LX0=[R2ρXiωX000R2ρX+iωX000R1ρX]DX=ΔRX2[0sin2θX12sin(2θX)sin2θX012sin(2θX)12sin(2θX)12sin(2θX)0] (15)

and the rotating frame relaxation rate constants are defined as:

R2ρX=12[R2X(1+cos2θX)+R1Xsin2θX]R1ρX=R2Xsin2θX+R1Xcos2θX (16)

The kinetic matrix becomes:

K¯=U1R1S1KSRU=[k12Ik12k21R¯y(Δθ)k12k21R¯y(Δθ)k21I] (17)

in which:

R¯y(Δθ)=[12(cosΔθ+1)12(cosΔθ1)12sinΔθ12(cosΔθ1)12(cosΔθ+1)12sinΔθ12sinΔθ12sinΔθcosΔθ] (18)

For completeness, the transformed magnetization is given by:

[ΔM¯A(t)ΔM¯B(t)]=U1R1S1[ΔMA(t)ΔMB(t)] (19)

with a similar expression for the equilibrium and steady-state magnetizations.

With these transformations, the Bloch-McConnell equation is written as:

ddt[ΔM¯A(t)ΔM¯B(t)]={Λ+Γ}[ΔM¯A(t)ΔM¯B(t)] (20)

in which:

Λ=[LA0k12I00LB0k21I]Γ=[DAk12k21R¯y(Δθ)k12k21R¯y(Δθ)DB] (21)

The matrix Λ is diagonal by construction and the matrix Γ is empty (all diagonal elements are zero). Importantly for the following discussion, the only frequency (imaginary) terms, ±ωA and ±ωB, appear on the diagonal of Λ.

Once a solution to Eq. 20 is found or approximated, the solution can be transformed back into the laboratory frame basis by using:

[MA(t)MB(t)]=SRU[ΔM¯A(t)+M¯AssΔM¯B(t)+M¯Bss] (22)

Alternatively, the matrix S commutes with R and U, so the total magnetization in the tilted rotating frame, in the Cartesian basis, is obtained as:

[M~A(t)M~B(t)]=SU[ΔM¯A(t)+M¯AssΔM¯B(t)+M¯Bss] (23)

The former transformation would be used in analyses of CEST or DEST experiments and the latter in analyses of R1ρ experiments.

Initial insights from formulation of the Bloch-McConnell equation in the tilted rotating frame of reference are obtained by considering the limit in which ωA ≫ {(k12k21)1/2, ΔRA} and ωB ≫ {(k12k21)1/2, ΔRB}. This limit always is reached if ω1 ≫ {(k12k21)1/2, ΔRA, ΔRB}. In this limit, off-diagonal elements of DX and R¯y(±Δθ) are non-secular and can be set to zero. The Bloch-McConnell equation becomes:

ddt[ΔM¯A(t)ΔM¯B(t)]=[LA0k12Ik12k21Ck12k21CLB0k21I][ΔM¯A(t)ΔM¯B(t)] (24)

in which:

C=[12(cosΔθ+1)00012(cosΔθ+1)000cosΔθ] (25)

Each secular pair of magnetization components now relaxes independently of other magnetization components. This result shows the importance of the ratio (k12k21)1/2/ω1 = (pApB)1/2kex/ω1: if this ratio is much less than unity, the six-dimensional coupled evolution of the Bloch-McConnell equation simplifies to three independent two-dimensional coupled evolution equations. For example, the resulting equation for evolution of z-magnetization in the tilted frame of reference becomes:

ddt[ΔM¯zA(t)ΔM¯zB(t)]=[R1ρAk12k12k21cosΔθk12k21cosΔθR1ρBk21][ΔM¯zA(t)ΔM¯zB(t)] (26)

This equation shows the fundamental importance for the R1ρ experiment of the difference in tilt angles, Δθ, for spin magnetization in sites A and B, as highlighted by Al-Hashimi and coworkers [2]. To illustrate this point, the radiofrequency field is assumed to be resonant with the spin in site A. If the difference in resonance frequencies Δω = ∣ΩB − ΩA∣ becomes very large , then Δθ → ∣π/2∣ and the z-magnetization components in the two sites relax independently. This is the slow exchange limit in the rotating frame. In the other limit, ω1 → ∞ and Δθ → 0. Assuming for simplicity that ΔRkex, the eigenvalues of the above matrix become −R2 and −(R2 + kex) in which R2 = pAR2A + pBR2B. In this limit, chemical exchange is fully suppressed for one (the more highly populated site) of the z-magnetization components, as expected.

As shown by Koss and coworkers [12], the R1ρ relaxation rate constant can be estimated from the negative reciprocal of the trace of the inverse of the Bloch-McConnell evolution matrix. Thus, using Eq. 26:

R1ρTr1([R1ρAk12k12k21cosΔθk12k21cosΔθR1ρBk21]1)(R1ρA+k12)(R1ρB+k21)k12k21cos2ΔθR1ρA+R1ρB+k12+k21R1ρAR1ρB+k21R1ρA+k12R1ρB+k12k21sin2ΔθR1ρA+R1ρB+kex (27)

Assuming kexR1ρA + R1ρB gives:

R1ρpAR1ρA+pBR1ρB+pApBsin2ΔθkexR¯1ρ+pApBkex[sinθBcosθAcosθBsinA]2R¯1ρ+pApBkexω12Δω2ωA2ωB2R¯1ρ+pApBkexsin2θ¯Δω2ωA2ωB2ωe2 (28)

in which θ¯=tan1(ω1Ω¯), Ω¯=pAΩA+pBΩB, and ωe=(ω12+Ω¯2)12 are the tilt angle, resonance frquency offset, and effective frequency for the population-average magnetization in the rotating frame. The last line is equivalent to the expression originally derived by Trott and Palmer:

R1ρ=R¯1ρ+sin2θ¯Rex=R¯1ρ+sin2θ¯pApBkexΔω2ωA2ωB2ωe2+kex2 (29)

in the limit that ωA2ωB2ωe2kex2, except that the definition R¯1ρ=pAR1ρA+pBR1ρB differs from the definitions used originally [7]. The new definition is more accurate when ω1 is small and the rf field is near resonance with Ω¯.

An additional result is obtained from Eq. 24 if the radiofrequency carrier is positioned exactly between the two resonances and ω1 = Δω/2. In this case, cos Δθ = 0 and the z-magnetizations in sites A and B relax independently of each other with decay constants R2ρA + k12 and R2ρB + k21, respectively. Essentially, the two magnetizations relax as if exchange were infinitely slow. Miloushev and Palmer showed that the R1ρ relaxation rate constant can be calculated analytically when the radiofrequency carrier is positioned midway between the two exchanging resonances or when pA = pB [9]. Al-Hashimi and coworkers noted the maximum in R1ρ is obtained when ω1 = Δω/2 [2]. The decoupling of evolution of the two z-magnetization components is a more general phenomenon and occurs because the effective fields for sites A and B are orthogonal and cos Δθ = 0, whenever ΩAΩB+ω12=0.

The basis of HAM has been described by Liao [22] and used to describe evolution of magnetization during shaped rf pulses by Crawley and Palmer [23].

The concept of HAM is to transform the solution of a solvable linear differential operator ℒ[] into the desired solution of a second, possibly non-linear, differential operator 𝒩[] by solving an iterative series of linear ‘deformation equations’. The transformed Bloch-McConnell equations provide the following definitions of the operators necessary for HAM:

[g(t)]={ddtΛ}g(t) (30)
𝒩[g(t)]={ddtΛΓ}g(t) (31)

in which g(t) is a vector function. The approximate solution to the Bloch-McConnell equation is given by:

[ΔM¯A(t)ΔM¯B(t)]=m=0M[ΔM¯Am(t)ΔM¯Bm(t)] (32)

in which M is the order of approximation.

The 0th-order approximation conveniently is chosen as the solution to Eq. 30:

[ΔM¯A0(t)ΔM¯B0(t)]=eΛt[ΔM¯A(0)ΔM¯B(0)] (33)

The 1st-order HAM deformation equation is:

[ΔM¯A1(t)ΔM¯B1(t)]=c0𝒩[ΔM¯A0(t)ΔM¯B0(t)]{ddtΛ}[ΔM¯A1(t)ΔM¯B1(t)]=c0Γ[ΔM¯A0(t)ΔM¯B0(t)] (34)

in which c0 is called the convergence control parameter (vide infra). The solution to this equation is:

[ΔM¯A1(t)ΔM¯B1(t)]=c0eΛt0tdteΛtΓ[ΔM¯A0(t)ΔM¯B0(t)]=c0eΛt0tdteΛtΓeΛt[ΔM¯A(0)ΔM¯B(0)] (35)

The mth-order deformation equation is:

[ΔM¯Am(t)ΔM¯Bm(t)]={+c0𝒩}[ΔM¯A(m1)(t)ΔM¯B(m1)(t)]{ddtΛ}[ΔM¯Am(t)ΔM¯Bm(t)]=(1+c0){ddtΛ}[ΔM¯A(m1)(t)ΔM¯B(m1)(t)]c0Γ[ΔM¯A(m1)(t)ΔM¯B(m1)(t)] (36)

The solution to this equation is:

[ΔM¯Am(t)ΔM¯Bm(t)]=(1+c0)[ΔM¯A(m1)(t)ΔM¯B(m1)(t)]c0eΛt0tdteΛtΓ[ΔM¯A(m1)(t)ΔM¯B(m1)(t)] (37)

This series solution will be called Method 1 in the following. The exponential of a diagonal matrix is obtained by exponentiating each diagonal element. Consequently the matrix calculations in the above equations can be performed analytically. For example, the first-order expression becomes:

[ΔM¯A1(t)ΔM¯B1(t)]=c0W(t)[ΔM¯A(0)ΔM¯B(0)] (38)

in which the elements of W are given by:

Wij(t)=ΓijeΛjjteΛiitΛjjΛii (39)

Note that Wii(t) = 0 because Γii = 0. Equation 38 is equivalent to the result of first-order perturbation theory, but no assumptions have been made that Γ depends on a small parameter. In addition, Eq. 37 provides a convenient generalization to higher-order terms in the series solution.

Equation 24 suggests another HAM series approximation to the Bloch-McConnell equation by defining: Λ′ = Λ + C and Γ′ = ΓC. In this case, Λ′ is not diagonal, but can be diagonalized by diagnalizing three 2 × 2 submatrices, rather than a general 6 × 6 matrix, as illustrated by Eq. 26. Given the factorization Λ=VΛ^V1, in which Λ^ is diagonal, the Bloch-McConnell equation is transformed to:

ddt[ΔM^A(t)ΔM^B(t)]={Λ^+Γ^}[ΔM^A(t)ΔM^B(t)] (40)

in which

[ΔM^A(t)ΔM^B(t)]=V1[ΔM¯A(t)ΔM¯B(t)] (41)

and Γ^=V1ΓV. Equation 40 has the same structure as Eq. 20 and is solved exactly as shown by Eqs. 33-37 using

[g(t)]={ddtΛ^}g(t)𝒩[g(t)]={ddtΛ^Γ^}g(t) (42)

The results of the HAM approximation then are transformed back to the original variables. This approach will be called Method 2 in the following.

The usual approaches to theoretical analysis of R1ρ relaxation focuses on exchange between states (as in Method 1), but Method 2 suggests that additional insights are obtained by focusing instead on exchange between magnetization components. Thus, the symmetrized Bloch-McConnell equations in the laboratory frame spherical basis (i.e. appying the unitary transformations S and U, but not R) can be reordered to give:

ddt[ΔMˇ(t)ΔMˇ+(t)ΔMˇz(t)]=[Γ0iω12I0Γ+iω12Iiω12Iiω12IΓz][ΔMˇ(t)ΔMˇ+(t)ΔMˇz(t)] (43)

In this expression,

[ΔMˇA(t)ΔMˇB(t)]=U1S1[ΔMA(t)ΔMB(t)] (44)

is reordered so that ΔMˇ(t)=[ΔMˇA(t)ΔMˇB(t)]T and:

Γ=[iΩAR2Ak12k12k21k12k21iΩBR2Bk21] (45)

with corresponding expressions for the other terms. Notably, Γ, Γ+, Γz in general have the dimension N × N and describe the evolution of magnetization in the absence of an applied rf field. Although not pursued herein, HAM applied to the Eq. 43 leads to a power series solution in ω1.

The Bloch-McConnell matrix in Eq. 43 is inverted by use of the Schur complement to give the first-order estimate of R1ρ as [13]:

R1ρ=Tr1{Γ1+Γ+1}{+Γz1[I+ω122(Γ1Γz1+Γ+1Γz1)]1[Iω122(Γ2+Γ+2)]} (46)

in which only matrices of size N × N must be inverted. In this expression, the details of the kinetic topology are contained in the individual Γ, Γ+, Γz matrices, so that the above formal expression does not change for different kinetic schemes. This property contrasts with the use of the Schur complement acting on matrix blocks for each state, in which case different topologies generate distinct and sometimes very complex expressions [13]. Equations 43 and 46 also clearly show the effect of the rf field as a perturbation to the free-precession evolution of magnetization. When ω1 → ∞, R1ρ1Tr{(Γ+1+Γ1)}, which yields the expected limiting value R1ρ = pAR2A + pBR2B for kex ≫ {R2A, R2B}.

The focus on magnetization components also provides an additional perspective when applied to the evolution of magnetization in the tilted rotating reference frame. Reordering Eq. 20 gives:

ddt[ΔM¯(t)ΔM¯+(t)ΔM¯z(t)]=Γ[ΔM¯(t)ΔM¯+(t)ΔM¯z(t)] (47)

in which,

Γ=[Γ11Γ12Γ13Γ21Γ22Γ23Γ31Γ32Γ33] (48)

the on-diagonal blocks are given by:

Γ11=Γ22=[iωAR2ρAk12k12k21(cosΔθ+1)2k12k21(cosΔθ+1)2iωBR2ρBk21]Γ33=[R1ρAk12k12k21cosΔθk12k21cosΔθR2ρBk21] (49)

and the off-diagonal blocks are given by:

Γ12=Γ21=[ΔRA2sin2θAk12k21(cosΔθ1)2k12k21(cosΔθ1)2ΔRB2sin2θB]Γ13=Γ23=Γ31T=Γ32T=[ΔRA22sin(2θA)k12k212sinΔθk12k212sinΔθΔRB22sin(2θB)] (50)

In many experiments, the primary interest is in the evolution of the two spin-locked z-magnetizations. The Bloch-McConnell equation for the six magnetization components can be transformed into a matrix differential equation for evolution of the z-magnetization components. First, note that

dndtnΔM¯z(t)=[Γ31Γ32Γ33]Γn1[ΔM¯(t)ΔM¯+(t)ΔM¯z(t)] (51)

The pair of equations for n = 1 and n = 2 is solved for ΔM¯(t) and ΔM¯+(t), which are substituted into the equation for n = 3. After some algebraic simplification, the resulting third-order differential equation for ΔM¯z(t) is:

d3dt3ΔM¯z(t)=Θ2d2dt2ΔM¯z(t)+Θ1ddtΔM¯z(t)+Θ0ΔM¯z(t) (52)

in which,

Θj=[Γ31Γ32Γ33]Γ2Ψj (53)
Ψ0=[(αβΓ321Γ31)1(γβΓ321Γ33)(βαΓ311Γ32)1(γαΓ311Γ33)I]Ψ1=[(αβΓ321Γ31)1βΓ321(βαΓ311Γ32)1αΓ3110]Ψ2=[(αβΓ321Γ31)1(βαΓ311Γ32)10] (54)
α=Γ31Γ11+Γ32Γ21+Γ33Γ31β=Γ31Γ12+Γ32Γ22+Γ33Γ32γ=Γ31Γ13+Γ32Γ23+Γ33Γ33 (55)

The above expressions are simplified for 2-site exchange because Γ13 = Γ32 (Eq. 50). In essence, a first-order 6 × 6 matrix differential equation has been replaced by a third-order 2 × 2 differential equation. For N-site exchange, the first-order 3N × 3N matrix differential equation is reformulated as a third-order N × N differential equation.

The Laplace transform of Eq. 52 has the solution:

ΔM¯z(s)=[s3IΘ2s2Θ1s+Θ0]1[s2{Θ2ΔM¯z(0)ΔM¯z(0)}sΘ1ΔM¯z(0)Θ2ΔM¯z(0)+ΔM¯z(0)] (56)

in which:

ΔM¯z(0)=ddtΔM¯z(t)t=0=Γ33ΔM¯z(0)ΔM¯z(0)=d2dt2ΔM¯z(t)t=0=γΔM¯z(0) (57)

and the second equality in each expression above is obtained assuming that the initial magnetization is aligned along the tilted frames of reference for the A and B sites.

A [0,1] Padé approximation is obtained from the s → 0 limit of Eq. 56 using Eq. 57 [8, 5]:

ΔM¯z(s)=[sI+BΘ11Θ0]1B(1+Θ11Θ2Γ33Θ11γ)ΔM¯z(0) (58)

in which:

B=[I+Θ11{Θ2Γ33}{Θ1+Θ2Γ33γ}1Θ0]1 (59)

The inverse Laplace transform of Eqn. 58 yields:

ΔM¯z(t)=exp[BΘ11Θ0t]B(I+Θ11Θ2Γ33Θ11γ)ΔM¯z(0) (60)

as an approximate solution for the long-time decay components of the z-magnetization.

Methods

All calculations were performed using Python 3.6. Numerical solutions of Eq. 4 were obtained using the SciPy odeint routine. Open-source code for all calculations is available at Github (https://github.com/hanskoss/HAMr1r).

Results and Discussion

The above theoretical analyses have yielded a number of novel results for evolution of spin-locked magnetization and for approximate expressions for the R1ρ relaxation rate constant. In the following, the accuracy of the analytical approximations are compared to numerical results. In addition, insights obtained by covarying ω1 and ωrf are presented for 2- and N-site chemical exchange topologies.

If c0 = −1, the HAM solutions are identical to an expansion of exp[(Λ + Γ)t] in a series of directional derivatives [24]. A similar series has been used in the analysis of Carr-Purcell-Meiboom-Gill relaxation dispersion by Koss and coworkers [25, 26]. As in the earlier work, such expansions are are accurate at low order when exchange is relatively slow. In contrast to other applications of HAM [23], variation of c0 did not appreciably affect convergence of the series approximations to the Bloch-McConnell equations. Consequently, all calculations performed herin used c0 = −1.

When ω1 is sufficiently large, only secular components in the local tilted frames of reference exchange magnetization through the kinetic process, as shown by Eq. 24. This result is illustrated in Figure 1. Initial magnetization was aligned along the local tilted rotating reference frames, as would be obtained experimentally using an adiabatic sweep [27], so that the initial magnetization is given by [0, 0, pA, 0, 0, pB]T. The x- and y- components of the magnetization remain small in magnitude, because these components are isolated from z-magnetization in Eq. 24. The x- and y-magnetizations are not identically zero at all times because ω1 is not infinitely greater than (k12k21)1/2. The zeroth-order result for method 1 does not couple the z-magnetization for sites A and B and fails to reproduce the numerical results. The zeroth-order result using method 2 is identical to the solution of Eq. 24 and exactly matches the numerical results for z-magnetization, while predicting the ideal results that x- and y-magnetizations are zero. The first-order result using method 2 is nearly exact for all magnetization components. The single exponential approximation to the evolution of ΔM~zA(t) magnetization using Eq. 29 is highly accurate.

Figure 1:

Figure 1:

HAM approximations for R1ρ relaxation in limit of large ω1. (a) Mx(t), (b) My(t), and (c) Mz(t) in local tilted frame for magnetization in site A. (d) Mx(t), (e) My(t), and (f) Mz(t) in local tilted frame for magnetization in site B. (black, solid line) Numerical solution of the Bloch-McConnell equation (Eq. 4). (green, dot-dashed line) Zeroth-order HAM approximation using method 1. (orange, dashed line) Zeroth-order HAM approximation using method 2. (reddish-purple, dotted line) First-order HAM approximation using method 2. (c) (blue, dotted line). Single exponential approximation using Eq. 29. Calculations use ΩA/2π = −200 Hz, ΩB/2π = 0 Hz, Δω/(2π) = 200 Hz, ω1 = Δω, kex = 0.1Δω, pA = 0.8, pB = 0.2, R1A = R1B = 1 s−1, R2A = R2B = 20 s−1, and c0 = −1. Initial magnetization is aligned along the local tilted rotating frames with amplitudes pA and pB, respectively.

When ω1 = Δω/2 is sufficiently large and the radiofrequency carrier is positioned midway between ΩA and ΩB, cos Δθ = 0, and the z-magnetization in sites A and B become decoupled and relax independently, as shown by Eq. 24. This result is illustrated in Figure 2. Initial magnetization was aligned along the local tilted rotating reference frames. As in Fig. 1, the x- and y- components of the magnetization remain small in magnitude. The zeroth-order results using method 1 and method 2 now match the numerical results for z-magnetization, while predicting the ideal results that x- and y-magnetizations are zero. The first-order result using method 2 again is nearly exact for all magnetization components. The single exponential approximation to the evolution of ΔM~zA(t) magnetization using Eq. 29 is highly accurate.

Figure 2:

Figure 2:

HAM approximations for R1ρ relaxation in limit of large ω1 and ΩA = −ΩB. (a) Mx(t), (b) My(t), and (c) Mz(t) in local tilted frame for magnetization in site A. (d) Mx(t), (e) My(t), and (f) Mz(t) in local tilted frame for magnetization in site B. (black, solid line) Numerical solution of the Bloch-McConnell equation (Eq. 4). (green, dot-dashed line) Zeroth-order HAM approximation using method 1. (orange, dashed line) Zeroth-order HAM approximation using method 2. (reddish-purple, dotted line) First-order HAM approximation using method 2. (c) (blue, dotted line) Single exponential approximation using Eq. 29. Calculations use ΩA/2π = −100 Hz, ΩB/2π = 100 Hz, Δω/(2π) = 200 Hz, ω1 = Δω/2, kex = 0.1Δω, pA = 0.8, pB = 0.2, R1A = R1B = 1 s−1, R2A = R2B = 20 s−1, and c0 = −1. Initial magnetization is aligned along the local tilted rotating frames with amplitudes pA and pB, respectively.

The results using method 2 are accurate for relatively low orders of approximation when chemical exchange is slow on the chemical shift time scale or when (k12k21)1/2/ω1 << 1. In practice, results are highly accurate using the second-order (M = 2) expansion if this ratio is < 0.2 and using the fifth-order (M = 5) approximation if this ratio is < 0.5. Even-order terms in the expansion primarily contribute to the accuracy of the evolution of z-magnetization and odd-order terms primarily contribute to the accuracy of the evolution of transverse magnetization.

Approximate expressions for R1ρ relaxation rate constants derived by estimation of the largest (least negative) eigenvalue of the Bloch-McConnell rate matrix generally are accurate when pB << pA [7, 9, 12]. The dependence of the difference in site populations is reduced in higher-order approximations, for example, comparing the results obtained by Trott and Palmer (Eq. 29) to those obtained by Miloushev and Palmer [9]:

ddtR1ρ=R¯1ρ+sin2θ¯Rex=R¯1ρ+sin2θ¯pApBkexΔω2ωA2ωB2ωe2+kex2sin2θ¯pApBΔω(1+2kex2(pAωA2+pBωB2)ωA2ωB2+ωe2kex2) (61)

In contrast, the HAM method is less dependent on the values of the site populations provided the above limits on (k12k21)1/2/ω1 are observed. As shown in Fig. 3, the effective relaxation rate constant obtained by integration of the estimated MzA(t) magnetization in an R1ρ experiment agrees closely with the results of Eq. 61, although the magnetization decay is clearly multi-exponential.

Figure 3:

Figure 3:

HAM approximations for R1ρ relaxation high and low populations of state A. (a) MzA(t) in the local tilted frame for magnetization in site A with site population pA = 0.9. (b) MzA(t) in the local tilted frame for magnetization in site A with site population pA = 0.6. (black, solid line) Numerical solution of the Bloch-McConnell equation (Eq. 4). (reddish-purple, dashed line) fourth-order HAM approximation using method 2 with c0 = −1. (orange, dash-dotted line) Exponential decay with decay constant determined from the integral of the HAM approximation. (blue, dash-dot-dotted line) Exponential decay with rate constant determined from Eq. 29. (green, dotted line) Exponential decay with rate constant determined from Eq. 61. Calculations use ΩA/2π = −200 Hz, ΩB/2π = 0 Hz, Δω/(2π) = 200 Hz, ω1 = 0.25Δω, kex = 0.25Δω, R1A = R1B = 1 s−1, R2A = R2B = 20 s−1. Initial magnetization is aligned along the local tilted rotating frames with amplitudes pA and pB, respectively.

The evolution of z-magnetization can be approximated using Eq. 60 for cases in which the transverse magnetization components, in the tilted rotating frame of reference, are not of interest. Equation 60 is an accurate description of the evolution of magnetization at long times, after decay of initial transients. An example of this approach is shown in Figure 4. The graphs show the evolution of z-magnetization in sites A and B for three different rf carrier positions: on-resonance with spins in site A, at the midpoint between resonances for sites A and B, and on-resonance with spins in site B, as might be sampled as part of a relaxation dispersion measurement. The exchange process is in the intermediate regime with (k12k21)1/2/ω1 = 0.8, giving rise to complicated evolution profiles that are nonetheless well approximated by Eq. 60. The decay rate for magnetization in site A obtained from the least negative eigenvalue of the argument to the exponential in Eq. 60 agrees well with results calculated from Eq. 61. If the evolution of magnetization becomes highly oscillatory, then the factor B is not accurate, leading to divergent evolution profiles. In such cases, fixing B = I yields convergent results comparable to the first-order accuracy of Eq. 29.

Figure 4:

Figure 4:

Approximations for R1ρ relaxation of states A and B. (a,c,e) MzA(t) in the local tilted frame for magnetization in site A. (b,d,f) MzB(t) in the local tilted frame for magnetization in site B. (black, solid line) Numerical solution of the Bloch-McConnell equation (Eq. 4); (reddish-purple, dashed line) calculation from Eq. 60; and (blue, dotted line) calculation from Eq. 60 with B = I. The rf carrier positions were (a, b) equal to the resonance frequency for site A, (c, d) midway between the resonance frequencies for sites A and B, and (e,f) equal to the resonance frequency for site B. Other parameters are pA = 0.8, ΩA/2π = 0 Hz, ΩB/2π = 200 Hz, Δω/(2π) = 200 Hz, ω1 = 0.5Δω, kex = Δω, R1A = R1B = 1 s−1, R2A = R2B = 20 s−1. Initial magnetization is aligned along the local tilted rotating frames with amplitudes pA and pB, respectively.

When chemical exchange is not extremely fast, the position of the minor (state B) resonance is identified as a local maximum of Rex=(R1ρR¯1ρ)sin2θ¯ as a function of resonance offset (or local minimum in resonance intensity in CEST experiments) [3]. Equation 24 suggests another strategy for determining Δω, and hence ΩB. If resonance offset is varied while maintaining a fixed tilt angle θA, a local maximum is obtained when cos Δθ = 0. The simplest approach is to fix θA = 45° or 135°, depending on whether ΩA is upfield or downfield of ΩB, respectively; in these cases, the local maximum occurs for ω1 = Δω/2 [2]. Also as indicated by Eq. 26, at this critical point, evolution of magnetization in state A is decoupled from evolution of magnetization is state B (Fig. 2). In practice, resonance offsets may be measured from Ω¯, rather than ΩA. If ω1 and ωrf are shifted to maintain Δθ = 90°, then:

0=ΩAΩB+ω12=(pBΔω+ω1)(pAΔωω1)+ω12=2ω12ω1Δω(pApB)pApBΔω2 (62)

in which ΩA = sgnω)(−pBΔωω1) and ΩB = sgnω)(pAΔωω1). The solution to this quadratic equation is:

ω1=Δω4(pApB±1+4pApB)=Δω4(12pB±1+4pB4pB2) (63)

When pApB:

ω1{Δω2,pBΔω} (64)

The first solution is the desired result and is identical to that obtained if resonance offset is measured relative to ΩA. The second solution trivially yields a second maximum in R1ρ at the resonance position of the major state A. These results are exact when ω1 ≫ {(k12k21)1/2, ΔRA, ΔRB} and approximate otherwise. Once Δω is determined, the desired value of ΩB is obtained using the known value of ΩA because Δω = ΩB − ΩA.

Examples of the two approaches are shown in Figure 5 for (k12k21)1/2/ω1 = 0.03 and 0.075. In Fig. 5a, local maxima in R1ρ are observed at ω1/2π = 100 and ω1/2π = 98 Hz for the two different values of kex when resonance offset is measured from ΩA = −ω1. Both maxima are observed at ω1/2π = 98 Hz when resonance offset is measured from Ω¯=ω1. These results are in excellent agreement with with expected value of ω1 = Δω/2 for Δω/2π = 200 Hz. At the maxima, the tilt angles are θA = 135° and θB = 45° when resonance offset is measured from ΩA. The tilt angles are θA = 140° and θB = 50° when resonance offset is measured from Ω¯. In both cases, ∣θBθA∣ = 90° and cos Δθ = 0. The maximum values of R1ρ are (green solid line) 24.8, (orange dotted line), 22.7, (blue, dashed line) 41.1, and (reddish-purple dashed-dotted line) 38.4 1/s, compared with limiting theoretical values of R1ρ=R¯1ρ+k12=25.1,23.1,44.0, and 41.9 1/s, respectively. In Fig. 5b, Rex is shown as a function of ΩA in the established approach for identifying the resonance frequency of the sparsely populated state. Local maxima are observed at −ΩA/2π = (black solid) 199 and (reddish-purple, dashed) 198 Hz, compared to the expected value of Δω = 200 Hz. Note that the approach illustrated in Fig. 5a does not require knowledge of R¯1ρ for calculation of Rex as in Fig. 5b.

Figure 5:

Figure 5:

Alternate methods of determining Δω. (a) R1ρ calculated as a function of ω1 with the constraint (green, solid line and blue dashed line) ΩA = −ω1 or (orange, dotted line and reddish-purple dashed-dotted line) ΩA = −pBΔωω1, giving a constant θA or θ¯=135, respectively. Values of ΩB = Δωω1 or ΩB = pAΔωω1, respectively. Values of kex were (green, solid line and orange dotted line) 0.1Δω or (blue dashed line and reddish-purple dashed-dotted line) 0.25Δω. (b) Rex calcuated as a function of ΩA with ω1 = Δω/2. Values of (green, solid line) kex = 0.1Δω and (blue, dashed line) kex = 0.25Δω. Other parameters are Δω/(2π) = 200 Hz, pA = 0.9, pB = 0.1, R1A = R1B = 1 s−1, and R2A = R2B = 20 s−1. R1ρ relaxation rates are calculated numerically and agree closely with appproximations using Eq. 61.

Many of the above results generalize in straightforward fashion to N-site chemical exchange, in particular Eq. 46 and Eqs. 52-60, simply by expanding the dimensionality of the relevant sub-matrix blocks. The observation that ∣Δθ∣ = 90° for specific combinations of ω1 and resonance offsets remains true for N-sites. For any two sites X and Y, ∣ΔθXY∣ = ∣θXθY∣ = 90° when ΩXΩY+ω12=0. If at the same time, ω1 is sufficiently large that non-secular interactions can be neglected (vide supra), then the z-magnetization components in sites X and Y relax independently of each other, while remaining connected to the other sites. A triangular A-B-C system is considered as an example. If ∣ΔθBC∣ = 90°, then the triangular system becomes equivalent to a pseudo-linear C-A-B system (while cross-exchange between states B and C is eliminated, the on-diagonal matrix elements for sites B and C remain unchanged). In contrast, if ∣ΔθAC∣ = 90°, then then the triangular system becomes equivalent to a pseudo-linear A-B-C system. These effects are illustrated in Figure 6. The system has ΩA < ΩB < ΩC. The value of ω1 is varied from 0 to ΔωCB while setting ΩB = −ω1. The values of R1ρ are plotted as a function of ω1 for the triangular A-B-C system and the two pseudo-linear systems C-A-B and A-B-C. As shown in Fig. 6, ΔθBC = 90° when ω1/2π = 100 Hz; at this point ΩB = 135° and ΩC = 45°. As predicted, R1ρ for the triangular and C-A-B linear systems coincide. In addition, ΔθAC = 90° when ω1/2π = 128.1 Hz; at this point ΩA = 150.7° and ΩC = 60.7°. As predicted, R1ρ for the triangular and A-B-C linear systems coincide. The effective decoupling and linearization illustrated in this example is a potential test for the identification of the topology of an N-site chemical exchange scheme.

Figure 6:

Figure 6:

Decoupling and linearziation of triangular A-B-C kinetic scheme with ΩA < ΩB < ΩC. (a) R1ρ calculated as a function of ω1 with the constraint ΩB = −ω1, giving ΩA = −ΔωBAω1, and ΩC = ΔωCBω1. (black, solid line) numerical eigenvalue of the triangular system; (reddish-purple, dashed line) numerical eigenvalue of the pseudo-linear C-A-B system; and (orange, dashed-dotted line) numerical eigenvalue of the pseudo-linear A-B-C system. Vertical blue dotted lines are drawn at ω1/2π = 100 and 128.1 Hz. (b) Absolute values of (reddish-purple, dashed line) ΔθBC and (orange, dashed-dotted line) ΔθAC. Vertical blue dotted lines are drawn at ω1/2π = 100 and 128.1 Hz. The horizontal black line is drawn at 90°. Site populations are pA = 0.85, pB = 0.05, pC = 0.10. Resonance frequency differences were ΔωBA/2π = 100 Hz and ΔωCB/2π = 200 Hz. Relaxation rate constants are R1A = R1B = R1C = 1 s−1, and R2A = R2B = R2C = 20 s−1. Kinetic parameters are k12 + k21 = 150, k13 + k31 = 100, and k23 + k32 = 226 s−1.

Furthermore, the relationship ΩXΩY+ω12=0 can be solved to obtain values of resonance offsets and 0 ≤ ω1 ≤ ΔωXY/2 that maintain ∣θXθY∣ = 90°. Figure 7 illustrates linearization of the A-B-C triangular system to the pseudo-linear C-A-B and A-B-C systems. The agreement between the calculated values of R1ρ for the triangular and linear systems is excellent except when ω1 is not sufficiently large.

Figure 7:

Figure 7:

Band decoupling and linearziation of triangular A-B-C kinetic scheme. Unless noted, parameters are identical to those in Fig. 6 (a) R1ρ calculated as a function of ω1 and ΩB. (black, solid line) numerical eigenvalue of the triangular system; (reddish-purple, dashed line) numerical eigenvalue of the pseudo-linear C-A-B system; vertical blue dotted line is drawn at ΔωCB/2π. (b) Value of ω1 obtained from ΩBΩC+ω12=0 used in calculations shown in (a). (a,b) ΩA = −ΔωBA + ΩB, and ΩC = ΔωCB + ΩB. (c) R1ρ calculated as a function of ω1 and ΩA. (black, solid line) numerical eigenvalue of the triangular system; (reddish-purple, dashed line) numerical eigenvalue of the pseudo-linear A-B-C system; vertical blue dotted line is drawn at ΔωCA/2π. (d) Value of ω1 obtained from ΩAΩC+ω12=0 used in calculations shown in (c). (c,d) ΩB = ΔωBA + ΩA and ΩC = ΔωCA + ΩA.

The orthogonality of effective fields is expected to change, and in many cases amplify, the sensitivity of R1ρ to variations of exchange parameters. In conventional off-resonance R1ρ or CEST experiments, the informed choice for a (typically) constant ω1 is not trivial. A hypothetical experiment based on known or predicted site resonance freqencies has the advantage of having defined ω1 by choosing two sites for which the effective fields are set to be orthogonal. Following a previously published example of three-site triangular kinetics with mixed slow- and fast-intermediate exchange [28], the impact of various exchange parameters on R1ρ were simulated for hypothetical experiments with ∣θXθY∣ = 90° (Fig. 8). Conventional R1ρ or CEST experiments only offer similar distinguishability with scenario-specific optimized ω1; however, they only offer superior distinguishability between R1ρ rate constants when exchange becomes fast and requires larger values of ω1. Setting ω1 to achieve orthogonality of effective fields might emerge as a reasonable experimental choice, especially when minor site chemical shifts are known or need to be validated.

Figure 8:

Figure 8:

Distinguishing R1ρ or CEST exchange parameters using orthogonal effective rf fields in a triangular ABC kinetic scheme. The −ΩA scale in the hypothetical experiments covers the sites according to the order ΩA < ΩB < ΩC. (a-f) R1ρ rates were obtained using orthogonal effective fields, with the constraint ΩXΩY+ω12=0. In panels (a-c), X = A and Y = C; in panels (d-f), X = A, Y = B for −ΩA < ΩB; and X = B, Y = C for −ΩA > ΩB. (g-i) R1ρ rates were obtained for conventional off-resonance R1ρ and CEST type experiments, using constant rf fields ω1/2π ≕ (g) 80 Hz, (h) 152 Hz, and (i) 83 Hz. For all panels, the reference case (black, solid line) has the following parameters: ΩB/2π = 69 Hz; ΩC/2π = 276.5 Hz; pB = 1.52; pC = 1.565; k12 + k21 = 3170 s−1; k31 + k31 = 695 s−1; k23 + k32 = 1250 s−1; R2A = R2B = R2C = 10 s−1; R1A = R1B = R1C = 1 s−1. This reference case has been adapted from a kinetic scenario described for residue Ile38 in Cadherin-11 [28]. All ω1 settings were set based on this reference case; all other simulated R1ρ curves to simulate other exchange parameters were based on this reference ω1 set. The left panels (a,d,g) illustrate z-fold changes of pB, (reddish-purple) z > 1, and (blue) z < 1; ∣z − 1∣ within each color group is increasing with dashed – dash-dot-dotted – dash-dotted – dotted; z factors are 0.05, 0.2, 0.5, 0.75, 1.25, 1.5, 2, 3. The center panels (b,e,h) illustrate z-fold changes in k12 + k21. Color schemes and line styles are defined as in the left panels; z factors are 0.00, 0.05, 0.2, 0.5, 2, 5, 10, 20. The right panels (c,f,i) illustrate z-fold changes in ΔωCA, (reddish-purple) z >= 1, (orange) 0 < z < 1, and (blue) z <= 0. Line styles are as defined as in the left panels; z factors are −5, −0.5, 0, 0.1, 0.3, 0.75, 0.9, 1.25, 1.5, 2, 5. The magnitudes of ω1 in panels (g-i) were determined by grid searches varying ω1 and T to maximize the average difference between the reference case and other simulated exchange parameters for each panel.

In addition, in the absence of chemical exchange, the first-order HAM approximation yields extremely accurate resuts for evolution during a rectangular pulse. The results shown in Figure 9, for initial z-magnetization, are nearly exact and should be compared to Figure 5 of Crawley and Palmer [23]. The improvement illustrates a major strength of HAM: different choices for the linear operator, initial approximation, and c0 can favorably impact the accuracy of the resulting approximate solutions.

Figure 9:

Figure 9:

HAM approximations for rectangular (a,b,c) 90°, (d,e,f) 180°, (g,h,i) 270°, and (j,k,l) 360° pulses applied to initial z-magnetization. Values of (a,d,g,j) Mx(Ω), (b,e,h,k), My(Ω), and (c,f,i,l) Mz(Ω) are shown as functions of resonance offset Ω. Magnetization components in absence of relaxation (black dotted line), first-order HAM approximation of the Bloch equations (reddish-purple dashed line), and exact solution of the Bloch equations (blue solid line). Calculations used ω1/(2π) = 250 Hz, R1 = 2 s−1, R2 = 200 s−1, and c0 = −1.

Conclusions

Nuclear magnetic spin relaxation in the presence of a spin-locking rf field, variously implemented in R1ρ, CEST, and DEST experiments, has emerged as an extremely powerful probe of biological macromolecules, enabling detailed descriptions of chemical and conformational states whose populations or kinetics are modified during biological processes. The present work, by examining the form of the Bloch-McConnell equation for 2-site chemical exchange in local frames of reference, emphasizes the importance of the ratio (k12k21)1/2/ω1 and the difference in local tilt angles θBθA in determining the qualitative properties of coupled magnetization evolution. The results also identify a special property of the R1ρ relaxation rate constant that allows determination of Δω by varying the rf carrier frequency and the spin-locking field strength in tandem. This same approach also can lead to effective decoupling and simplification of exchange topologies for N-site kinetic schemes in favorable circumstances. A compact trace expression for R1ρ is derived that has the same functional form for arbitrary number of sites N. Finally an approximate equation is obtained for evolution of coupled z-magnetization in the tilted rotating frame of reference. These results advance qualitative understanding of rotating-frame relaxation and may suggest fruitful experimental approaches.

Highlights.

Dependence of R1ρ relaxation on local tilt angles for pairs of sites.

Equation for R1ρ rate constant for N-site exchange.

Long-time evolution of z-magnetization for N-site exchange.

Simplification of R1ρ relaxation for N-site exchange.

Acknowledgments

Supported by U.S. National Institutes of Health grant R35 GM130398 (A.G.P).

Footnotes

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Declaration of interests

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

References

  • [1].Palmer AG, Massi F, Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy, Chem. Rev 106 (5) (2006) 1700–19. [DOI] [PubMed] [Google Scholar]
  • [2].Rangadurai A, Szymaski ES, Kimsey IJ, Shi H, Al-Hashimi HM, Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R relaxation dispersion, Prog. Nucl. Magn. Reson. Spectrosc 112-113 (2019) 55–102. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [3].Palmer AG, Koss H, Chemical exchange, Meth. Enzymol 615 (2019) 177–236. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [4].Grey MJ, Wang C, Palmer AG, Disulfide bond isomerization in basic pancreatic trypsin inhibitor: multisite chemical exchange quantified by CPMG relaxation dispersion and chemical shift modeling, J. Am. Chem. Soc 125 (47) (2003) 14324–35. [DOI] [PubMed] [Google Scholar]
  • [5].Abergel D, Palmer AG, On the use of the stochastic Liouville equation in NMR: Application to R relaxation in the presence of exchange, Concepts Magn. Reson 19A (2003) 134–148. [Google Scholar]
  • [6].Abergel D, Palmer AG, A Markov model for relaxation and exchange in NMR spectroscopy, J. Phys. Chem. B 109 (11) (2005) 4837–44. [DOI] [PubMed] [Google Scholar]
  • [7].Trott O, Palmer AG, R relaxation outside of the fast-exchange limit, J. Magn. Reson 154 (1) (2002). [DOI] [PubMed] [Google Scholar]
  • [8].Trott O, Abergel D, Palmer AG, An average-magnetization analysis of R relaxation outside the fast-exchange limit, Molec. Phys 101 (2003) 753–763. [Google Scholar]
  • [9].Miloushev VZ, Palmer AG, R relaxation for two-site chemical exchange: general approximations and some exact solutions, J. Magn. Reson 177 (2) (2005) 221–227. [DOI] [PubMed] [Google Scholar]
  • [10].Baldwin AJ, Kay LE, An R expression for a spin in chemical exchange between two sites with unequal transverse relaxation rates, J. Biomol. NMR 55 (2) (2013) 211–218. [DOI] [PubMed] [Google Scholar]
  • [11].Trott O, Palmer AG, Theoretical study of R rotating-frame and R2 free-precession relaxation in the presence of n-site chemical exchange, J. Magn. Reson 170 (1) (2004) 104–12. [DOI] [PubMed] [Google Scholar]
  • [12].Koss H, Rance M, Palmer AG, General expressions for R relaxation for N-site chemical exchange and the special case of linear chains, J. Magn. Reson 274 (2017) 36–45. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [13].Rance M, Palmer AG, Compact expressions for R relaxation for N-site chemical exchange using Schur decomposition, J. Magn. Reson 313 (2020) 106705. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [14].Liu B, Shi H, Al-Hashimi HM, Developments in solution-state NMR yield broader and deeper views of the dynamic ensembles of nucleic acids, Curr. Opin. Struct. Biol 70 (2021) 16–25. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [15].Rovó P, Recent advances in solid-state relaxation dispersion techniques, Solid State Nucl. Magn. Reson 108 (2020) 101665. [DOI] [PubMed] [Google Scholar]
  • [16].Tugarinov V, Ceccon A, Clore GM, NMR methods for exploring ‘dark’ states in ligand binding and protein-protein interactions, Prog. Nucl. Magn. Reson. Spectrosc 128 (2022) 1–24. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [17].Vugmeyster L, Recent developments in deuterium solid-state NMR for the detection of slow motions in proteins, Solid State Nucl. Magn. Reson 111 (2021) 101710. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [18].Walinda E, Morimoto D, Sugase K, Resolving biomolecular motion and interactions by R2 and R relaxation dispersion NMR, Methods 148 (2018) 28–38. [DOI] [PubMed] [Google Scholar]
  • [19].Zhuravleva A, Korzhnev DM, Protein folding by NMR, Prog. Nucl. Magn. Reson. Spectrosc 100 (2017) 52–77. [DOI] [PubMed] [Google Scholar]
  • [20].Sekhar A, Kay LE, An NMR view of protein dynamics in health and disease, Annu. Rev. Biophys 48 (1) (2019) 297–319. [DOI] [PubMed] [Google Scholar]
  • [21].Alderson TR, Kay LE, NMR spectroscopy captures the essential role of dynamics in regulating biomolecular function, Cell 184 (3) (2021) 577–595. [DOI] [PubMed] [Google Scholar]
  • [22].Liao S, Homotopy Analysis Method in Nonlinear Differential Equations, Springer, Berlin, Heidelberg, 2012. [Google Scholar]
  • [23].Crawley T, Palmer AG, Approximate representations of shaped pulses using the homotopy analysis method, Magn. Reson 2 (1) (2021) 175–186. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [24].Najfeld I, Havel T, Derivatives of the matrix exponential and their computation, Adv. Appl. Math 16 (3) (1995) 321–375. [Google Scholar]
  • [25].Koss H, Rance M, Palmer AG, General expressions for Carr-Purcell-Meiboom-Gill relaxation dispersion for N-site chemical exchange, Biochem. 57 (31) (2018) 4753–4763. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [26].Koss H, Rance M, Palmer AG, Algebraic expressions for Carr-Purcell-Meiboom-Gill relaxation dispersion for N-site chemical exchange, J. Magn. Reson 321 (2020) 106846. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • [27].Mulder FAA, de Graaf RA, Kaptein R, Boelens R, An off-resonance rotating frame relaxation experiment for the investigation of macromolecular dynamics using adiabatic rotations, J. Magn. Reson 131 (1998) 351–357. [DOI] [PubMed] [Google Scholar]
  • [28].Koss H, Honig BH, Shapiro LS, Palmer AG, Dimerization of cadherin-11 involves multi-site coupled unfolding and strand swapping, Structure 29 (2021) 1105–1115. [DOI] [PMC free article] [PubMed] [Google Scholar]

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