Comparative Genetic Mapping and Discovery of Linkage Disequilibrium Across Linkage Groups in White Clover (Trifolium repens L.)

Supporting Information for Isobe et al, 2012

Files in this Data Supplement:

  • Supporting Information - Figures S1-S5 and Tables S1-S5 (PDF, 4 MB)
  • Figure S1 - Graphical genotypes of the largest linkage groups of the 'T17-349'-specific map constructed before disassembling the locus data (PDF, 181 KB)
  • Figure S2 - Functional classification of non-redundant EST sequences of T. repens and unigene sequences of L. japonicus, A. thaliana, and O. sativa based on KOG categories (PDF, 330 KB)
  • Figure S3 - Graphical genotypes of 50 of the 188 F1 populations mapped onto the largest linkage group shown in Figure S1 (PDF, 1.5 MB)
  • Figure S4 - Graphical view of syntenic blocks between white clover and M. truncatula (PDF, 164 KB)
  • Figure S5 - List of loci with identified LD showing r2>0.5 between loci mapped onto different linkage groups, and photographs of acrylamide gel electrophoresis of PCR amplicons of the listed loci (PDF, 11.6 MB)
  • Table S1 - Primer sequences, SSR motifs, and expected sizes of amplicons of white clover EST-SSR markers (.xls, 374 KB)
  • Table S2 - Locus name, position, and segregation distortion of the integrated and parental-specific maps (.xls, 480 KB)
  • Table S3 - List of the non-redundant white clover ESTs (.xls, 1.8 MB)
  • Table S4 - Number of mapped multiple loci and loci exhibiting parental-specific polymorphisms (.xls, 31 KB)
  • Table S5 - Locus name and position of an integrated linkage map of red clover developed from a cross between HR and R130 (.xls, 182 KB)