Supplemental Data
Files in this Data Supplement:
- Supplemental Fig. S1 - Supplemental Fig. S1 Icelogo plots of HLA-A2, HLA-B7 and HLA-B44 binding peptides of 8-14 mer length and Icelogo plots of HLA-C binding peptides of 8-11 mer length. Peptides of different length clearly display a similar binding motif.
- Supplemental Table S1 - Supplemental Table S1 Listing of all identified 8-11 mer HLA-ligands derived from B-LCLs JY and HHC with a best mascot ion score > 35
- Supplemental Table S2 - Supplemental Table S2 Summary of the number of identified unique 8-11 mer peptides after searching the indicated database with the indicated FDR and/or best mascot ion score >35, and the number of overlapping peptides with the listing based on the use of a best mascot ion score of >35.
- Supplemental Table S3 - Supplemental Table S3 Virus-derived peptides identified, and confirmed by MS/MS of their synthetic counterpart, in our dataset. UTR=untranslated region. ARF=alternative
- Supplemental Table S4 - Supplemental Table S4 Listing of all identified 8-11 mer phosphorylated peptide ligands derived from B-LCLs JYpp65 and HHC with a best mascot ion score >35
- Supplemental Table S5 - Supplemental Table S5 Listing of all identified 8-11 mer cysteinylated peptide ligands derived from B-LCLs JYpp65 and HHC with a best mascot ion score >35