Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors

Supplemental Data

Files in this Data Supplement:

• Suppl figure S1-S6 - Pdf file with supplementary figures S1-S6
• Suppl fig S7_Part1 - MSMS spectra for single peptide based identifications.
• Suppl fig S7_Part2 - MSMS spectra for single peptide based identifications.
• Suppl fig S7_Part3 - MSMS spectra for single peptide based identifications.
• Text for supplementary material - Text for supplementary material
• S1ProteinTable_matched - Table with the list of identified proteins and their absolute abundances after matching.
• S2ProteinTable_notmatched - Table with the list of identified proteins in C2C12 and muscle without matching.
• S3Cumulative and Ranked protein abundance - Table describing cumulative and Ranked protein abundance for proteins identified in C2C12 and muscle.
• S4Significantly different proteins - List of significantly different proteins between C2C12 and muscle
• S5Enriched clusters with annotations - Table described protein category enriched after Fisher exact test.
• S62D annotation scores - Table describing 2D annotation enrichment scores for C2C12 and muscle
• S7Absolute abundance - Table describing absolute abundances for proteins involved in insulin and AMPK signaling.
• S8Single peptide identification details - Table describing details of single peptide based identifications.
• S9Deamidation of Asn - Table describing the proteins identified with deamidation of Asn as variable modification.