Salmonella Serotype Determination Utilizing High-Throughput Genome Sequencing Data

Supplemental material

Files in this Data Supplement:

• Supplemental file 1 -

  Text S1 (Considerations for interpreting serotype in Salmonella based on the conventions of the White-Kauffmann-Le minor scheme)

  PDF, 246K

• Supplemental file 2 -

  Fig. S1 (Reads dilution effect)

  PDF, 94K

• Supplemental file 3 -

  Table S1 (CDC isolates used in validation of SeqSero)

  XLSX, 26K

• Supplemental file 4 -

  Table S2 (GenomeTrakr isolates used in validation of SeqSero)

  XLSX, 183K

• Supplemental file 5 -

  Table S3 (Genome assemblies used in validation of SeqSero)

  XLSX, 30K

• Supplemental file 6 -

  Table S4 (Additional markers for differentiating O groups O2, O9, O9,46, O9,46,27, O3,10, and O1,3,19)

  XLSX, 9.9K

• Supplemental file 7 -

  Table S5 (Predefined H antigen clusters)

  XLSX, 9.7K

• Supplemental file 8 -

  Table S6 (Summary of Salmonella serotypes correctly determined in this study)

  XLSX, 14K

• Supplemental file 9 -

  Table S7 (Primers for in silico PCR)

  XLSX, 9.7K