Reconstruction of Genome Ancestry Blocks in Multiparental Populations
Supporting Information
Supporting Information
- Supporting Information - Figures S1-S3 and Tables S1-S4 (PDF, 507 KB)
- Figure S1 - The posterior probabilities of the 19 ancestral origins obtained from the simulated datasets MAGIC-F5 (left panels) and MAGIC-F11 (right panels). (PDF, 223 KB)
- Figure S2 - The posterior probabilities of the 36 ancestral origin states obtained from the simulated datasets CC-F11-AA (left panels) and CC-F11-XX (right panels). (PDF, 225 KB)
- Figure S3 - Similar to Figure 7 but for the posterior probabilities of the eight ancestral origins along the first pair of autosomes of the example pre-CC line (IL-18). (PDF, 218 KB)
- Table S1 - Probability P(Y|Z, ε) of the observed genotype Y given the true phased genotype Z, and the allelic typing error probability ϵ. (PDF, 81 KB)
- Table S2 - Probability P(D|Z, O, εF) of the derived genotype D given the true phased genotype Z, the latent ancestral origin state O, and the allelic typing error probability ϵF. (PDF, 93 KB)
- Table S3 - Probability P(Y│Z, ϵ) of the observed allele Y given the true allele Z, and the allelic typing error probability ϵ. (PDF, 79 KB)
- Table S4 - Probability P(D│Z,O,ϵF) of the derived allele D given the true allele Z, the latent ancestral origin O, and the allelic typing error probability ϵF. (PDF, 79 KB)