Supporting Information for Nigg et al., 2015
Files in this Data Supplement:
- Supporting Information - Figures S1-S3 and Tables S1-S9 (PDF, 1 MB)
- Figure S1 - Workflow for RNAseq library preparation, cleaning and analysis for the 3 growth conditions (yeasts, mycelium on petri dishes and mycelium in flask, 3 replicates per condition) for Ophiostoma novo-ulmi. (PDF, 485 KB)
- Figure S2 - Number of Ophiostoma novo-ulmi RNAseq reads per sample and per gene. (PDF, 324 KB)
- Figure S3 - Distribution of the number of orthologs between two species per percentage of gene sequence identity. (PDF, 391 KB)
- Table S1 - Species and strain/isolate names, references and sequence sizes for the species used to build the phylogenetic tree. (PDF, 118 KB)
- Table S2 - General characteristics for each RNAseq sample for Ophiostoma novo-ulmi. (PDF, 156 KB)
- Table S3 - Number of orthologous genes found with the reciprocal best blast hits (RBH) method compared with the Inparanoid method of Khoshraftar et al. (2013). (PDF, 116 KB)
- Table S9 - Description of the 21 orthologous genes overexpressed in yeast in both Ophiostoma novo-ulmi and Candida albicans. (PDF, 151 KB)
- Table S4 - Read counts for each gene per sample in Ophiostoma novo-ulmi. (.xlsx, 598 KB)
- Table S5 - Genes overexpressed in yeast phase of Ophiostoma novo-ulmi. (.xlsx, 46 KB)
- Table S6 - Genes overexpressed in mycelium phase of Ophiostoma novo-ulmi. (.xlsx, 43 KB)
- Table S7 - Description of the 63 orthologous genes overexpressed in yeast in both Ophiostoma novo-ulmi and Histoplasma capsulatum. (.xlsx, 12 KB)
- Table S8 - Description of the 68 orthologous genes overexpressed in mycelium in both Ophiostoma novo-ulmi and Histoplasma capsulatum. (.xlsx, 13 KB)