From the Cover: Quantifiable cytotoxic T lymphocyte responses and HLA-related risk of progression to AIDS -- Scherer et al. 101 (33): 12266 Data Supplement - HTML Page - index.htslp -- Proceedings of the National Academy of Sciences

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Scherer et al. 10.1073/pnas.0404091101.

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Supporting Table 2

Table 2. HIV peptides used for IFN-g enzyme-linked immunospot analysis

No.	Sequence	HLA	Protein position	Category
0	WIYHTQGYF	A1	NEF 111–119	Nef
1	GSEELRSLY	A1	P17 71–79	Gag
2	ISERILSTY	A1	RT 55–63	RT
3	TLYCVHQRI	A11	P17 84–92	Gag
4	ACQGVGGPGHK	A11	P24 217–227	Gag
5	AIFQSSMTK	A11	RT 313–321	RT
6	QIYQEPFKNLKTG	A11	RT 495–507	RT
7	QVPLRPMTYK	A11	NEF 71–80	Nef
8	AVDLSHFLK	A11	NEF 82–90	Nef
9	FNCGGEFFY	A29	GP120 380–388	Env
10	NSSKVSQNY	B35	P17 124–132	Gag
11	PPIPVGDIY	B35	P24 122–130	Gag
12	TVLDVGDAY	B35	RT 262–270	RT
13	VPLDEDFRKY	B35	RT 273–282	RT
14	SPAIFQSSM	B35	RT 311–319	RT
15	HPDIVIYQY	B35	RT 330–338	RT
16	VPVWKEATTTL	B35	GP120 41–50	Env
17	TAVPWNASW	B35	GP41 96–104	Env
18	VPLRPMTY	B35	NEF 72–79	Nef
19	EELRQHLLRW	B44	RT 358–367	RT
20	TWETWWTEYW	B44	RT 552–561	RT
21	AAENLWVTVYY	B44	GP120 29–39	Env
22	GGKKKYKLK	B8	P17 24–32	Gag
23	ELRSLYNTV	B8	P17 74–82	Gag
24	GEIYKRWII	B8	P24 127–135	Gag
25	DCKTILKAL	B8	P24 197–205	Gag
26	GPKVKQWPL	B8	RT 173–181	RT
27	WPTVRERM	B8	NEF 13–20	Nef
28	FLKEKGGL	B8	NEF 90–97	Nef
29	SLYNTVATL	A2	P17 77–85	Gag
30	VIYQYMDDL	A2	RT 334–342	RT
31	ILKEPVHGV	A2	RT 464–472	RT
32	GHQAAMQMLKE	A2	P24 61–70	Gag
33	HAGPIAPGQMREPRG	A2	P24 87–101	Gag
34	GNFLQSRPEPTAPPF	A2	P15 69–83	Gag
35	KEGHQMKDCTERQANF	A2	P15 41–56	Gag
36	VLDVGDAYFSV	A2	RT 263–273	RT
37	VLEWRFDSRL	A2	NEF 178–187	Nef
38	RYPLTFGWCYK	B18	NEF 132–142	Nef
39	NANPDCKTI	B51	P24 193–201	Gag
40	TAFTIPSI	B51	RT 283–290	RT
41	RAIEAQQHL	B51	GP41 47–55	Env
42	SQRRQDILDLWIYHTQGYFPDWQNY	B13	NEF 101–125	Nef
43	ISPRTLNAW	B57	P24 15–23	Gag
44	KAFSPEVIPMF	B57	P24 30–40	Gag
45	TSTLQEQIGW	B57	P24 108–117	Gag
46	QASQEVKNW	B57	P24 176–184	Gag
47	PIVLPEKDSW	B57	RT 398–407	RT
48	KITTESIVIW	B57	RT 529–538	RT
49	GPGVRYPLTFGWCY	B57	NEF 128–141	Nef
50	HTQGYFPDWQ	B57	NEF 114–123	Nef
51	KYKLKHIVW	A24	P17 28–36	Gag
52	YLKDQQLL	A24	GP41 76–83	Env
53	YFPDWQNYTPGPGIRYPLTFGWCYK	A24	NEF 118–142	Nef
54	KRWIILGLNK	B27	P24 131–139	Gag
55	RRQDILDLWI	B27	NEF 103–112	Nef
56	KIRLRPGGKK	B27	P17 18–27	Gag
57	RRWIQLGLQK	B27	P24 131–140	Gag
58	GRRRGWEALK	B27	GP41 276–284	Env
59	SPRTLNAWV	B7	P24 16–24	Gag
60	TPQDLNTM	B7	P24 48–55	Gag
61	GPGHKARVL	B7	P24 223–231	Gag
62	SPAIFQSSMT	B7	RT 311–319	RT
63	YLAWVPAHK	B7	RT 687–695	RT
64	RPNNNTRKSI	B7	GP120 302–311	Env
65	IPRRIRQGL	B7	GP41 333–341	Env
66	FPVTPQVPLR	B7	NEF 66–75	Nef
67	RPMTYKAAL	B7	NEF 75–83	Nef
68	HSQRRQDILDLWIY	B7	NEF 100–113	Nef
69	TPGPGVRYPL	B7	NEF 126–135	Nef
70	SFNCGGEFF	B15	GP120 379–387	Env
71	QVPLRPMTYK	A3	NEF 71–80	Nef
72	KIRLRPGGKK	A3	P17 18–27	Gag
73	ALVEICTEMEK	A3	RT 188–198	RT
74	AIFQSSMTK	A3	RT 313–333	RT
75	RLRDLLLIVTR	A3	GP41 786–778	Env
76	AFHHVAREK	A3	NEF 190–198	Nef
77	RLRDLLLIVTR	A31	GP41 786–778	Env
78	VLSIVNRVRQGYSPLSFQTH	A32	GP41 701–720	Env
79	DTGHSNQVSQNY	A33	P17 121–132	Gag
80	AIFQSSMTK	A33	RT 313–333	RT
81	EVIPMFSAL	A26	P24 167–175	Gag
82	ETFYVDGAANR	A26	RT 593–603	RT
83	TSTLQEQIGW	B58	P24 108–117	Gag
84	DLNTMLNTV	B14	P24 183–191	Gag
85	DRFYKTLRA	B14	P24 298–306	Gag
86	ALQDSGLEVVTDSQYALGI	B14	RT 648–672	RT
87	ERYLKDQQL	B14	GP41 591–599	Env