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Table 2. Primer sequences
Primer name |
Primer sequence |
BamHI-flaA-595 |
CGGGATCCCGCACAAGTAAGTAAGCCGAATATTCATC |
flaA-ext |
CTTGCGCTTGAGTCATGCCTTCGTTATTTTTACGAAG |
5-Bam-withP-lmo0674 |
CGGGATCCCACCTTTCACTCCCTTCATCAGATTAC |
3-Sal-lmo0674 |
ACGCGTCGACGAATAGATTCACCATTTACGGTATAAATTTCG |
int-seq-lmo0674 |
CAAGTAGAAGATATTCCGAAAAACAAG |
5' SacI DraII rrnB term |
CCTGAGCTCGGGCCCTTTCGTCTTCAAGAATTAA |
3' SacI rrnB term |
CGGGAGCTCGAATTCCGATCCCCAATTCC |
5' SacI Phyperspac (-40-+1) EagI |
P- CAATTTTGCAAAAAGTTGTTGACTTTATCTACAAGGTGTGGCATAATGTGTGTC |
3' SacI Phyperspac (-40-+1) EagI |
P- GGCCGACACACATTATGCCACACCTTGTAGATAAAGTCAACAACTTTTTGCAAAATTGAGCT |
5' ermC incl -35 |
CCCAAAGTGCACAATCGCATCCGATTGCAG |
3' PvuI ermC |
GGGTTTCGATCGGGCACACGAAAAACAAGT |
5-Bam-flaA-full-P |
CGGGATCCGAAGTGTTTGGACAACTTTTCTGTTCAA |
BamHI-flaA-724 |
CGGGATCCTAAAAACATAAAAACGTTGATATAAAGCCG |
BamHI-flaA-780 |
CGGGATCCCAACTTATTTTTACATTTTTAATAAAAAACATTTG |
5-Bam-flaA-35 |
CGGGATCCAACATTTGATTTTTTAAAAAAATGAAGATA |
5-Bam-flaA-NO-P |
CGGGATCCAACCGAATGTAGGAGGGAAACACAAATG |
3-KpnI-LacZ |
GGGGTACCTTATTTTTGACACCAGACCAACTGG |
5-1kb-Kpn-lmo0674 |
GGGGTACCGTCCAACAAGCACTTGGTTGGGCGGCAAATTCG |
5-int-lmo0674 |
TTCTTTGAATACAAGTAATTTTCTTATTTCTGATTTAGGCAT |
3-1kb-Bam-lmo0674 |
CGGGATCCGTAGAGTTTAACTAAAATACCTCAATAACATTTTG |
3-int-lmo0674 |
AGAAAATTACTTGTATTCAAAGAAAATTATAAACAAATGTAA |
cheY-ext |
ATCTTTCACGATATTCTTAATCATCGTACGCATGAACATCGC |
lmo0675-ext |
ACTAAAAAATAAGAAATTCCCGCAAGTACTGCCAAAAGTAC |
327-biotin |
B- CGCACAAGTAAGTAAGCCGAATATTCATC |
3' EcoRV shift with P |
ACGCGATATCCTTCTCTATATGCTTTATTATATCTTC |
Italicized portions of sequences indicate restriction endonuclease sites; P- or B- preceding the primer sequence indicates 5' phosphorylation or biotinylation, respectively.