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Table 7. Domain conservation of heterogeneous (H) complex proteins
|
Accession no. |
Protein name |
Human |
Mouse |
Fugu |
|
|
|
Predicted domain |
||
|
Q13151 |
hnRNP A0 |
2RRM |
2RRM |
2RRM |
|
P09651 |
hnRNP A1 |
2RRM |
2RRM |
2RRM |
|
P22626 |
hnRNP A2/B1 |
2RRM |
2RRM |
No ortholog |
|
P51991 |
hnRNP A3 |
2RRM |
2RRM |
2RRM |
|
P07910 |
hnRNP C1/C2 |
1RRM |
1RRM |
1RRM |
|
Q14103 |
hnRNP D0 |
2RRM |
2RRM |
2RRM |
|
NM 004966 |
hnRNP F |
3RRM |
3RRM |
No ortholog |
|
L22009 |
hnRNP H |
3RRM |
3RRM |
2RRM |
|
P26599 |
hnRNP I/PTB |
4RRM |
4RRM |
3RRM |
|
Q07244 |
hnRNP K |
3KH |
3KH |
1KH |
|
P14866 |
hnRNP L |
3RRM |
1RRM |
2RRM |
|
O43390 |
hnRNP R |
3RRM |
3RRM |
3RRM |
|
AL031668 |
hnRNP RALY |
1RRM |
1RRM |
No ortholog* |
|
P35637 |
hnRNP FUS/hnRNP P2 |
1RRM |
1RRM |
1RRM |
|
B54857 |
NF-AT 90K |
2DSRM |
2DSRM |
2DSRM |
|
A54587 |
NF-AT 45K |
25A synth |
25A synth |
25A synth |
|
AF037488 |
GRY-RBP |
3RRM |
3RRM |
— |
|
P43243 |
Matrin3 |
2RRM |
2RRM |
1RRM |
|
O43684 |
hBUB3 |
WD40 |
WD40 |
WD40 |
|
Q15717 |
HuR |
3RRM |
3RRM |
3RRM |
|
Q92804 |
TAFII68 |
1RRM, ZF |
1RRM, ZF |
1RRM, ZF |
|
P16991 |
YB1 |
CSD |
CSD |
CSD |
|
P16989 |
DBPA |
CSD |
CSD |
No ortholog |
|
P08107 |
HSP70 |
HSP70 |
HSP70 |
No ortholog* |
|
P11142 |
HSP71 |
HSP71 |
HSP71 |
HSP71 |
|
|
|
Ensembl ID |
||
|
Q13151 |
hnRNP A0 |
177733 |
007836 |
145410 |
|
P09651 |
hnRNP A1 |
135486 |
036021 |
146321 |
|
P22626 |
hnRNP A2/B1 |
122566 |
004980 |
No ortholog |
|
P51991 |
hnRNP A3 |
176825 |
047468 |
124772 |
|
P07910 |
hnRNPC1/C2 |
092199 |
004563 |
144808 |
|
Q14103 |
hnRNP D0 |
138668 |
000568 |
129026 |
|
NM 004966 |
hnRNP F |
169813 |
042079 |
No ortholog |
|
L22009 |
hnRNP H |
169045 |
007850 |
129688 |
|
P26599 |
hnRNP I/PTB |
011304 |
006498 |
125066 |
|
Q07244 |
hnRNP K |
165119 |
021546 |
135555 |
|
P14866 |
hnRNP L |
104824 |
015165 |
136448 |
|
O43390 |
hnRNP R |
125944 |
028666 |
151323 |
|
AL031668 |
hnRNP RALY |
125970 |
027593 |
No ortholog* |
|
P35637 |
hnRNP FUS/hnRNP P2 |
089280 |
030795 |
125014 |
|
B54857 |
NF-AT 90K |
129351 |
032178 |
144346 |
|
A54587 |
NF-AT 45K |
143621 |
001016 |
133792 |
|
P43243 |
Matrin3 |
015479 |
037236 |
120558 |
|
O43684 |
hBUB3 |
154473 |
015688 |
151235 |
|
Q15717 |
HuR |
066044 |
040028 |
135392 |
|
Q92804 |
TAFII68 |
172660 |
020680 |
152729 |
|
P16991 |
YB1 |
065978 |
028639 |
137733 |
|
P16989 |
DBPA |
060138 |
030189 |
No ortholog |
|
P08107 |
HSP70 |
096469 |
007033 |
No ortholog* |
|
P11142 |
HSP71 |
109971 |
015656 |
141042 |
Swiss-Prot accession numbers, predicted domains, and the last six digits of the Ensembl gene identifiers for human (ENSG00000), mouse (ENSMUSG00000) and Fugu (SINFRUG00000) are listed. hnRNP, heterogeneous nuclear ribonucleoprotein; see Table 8 for domain abbreviation descriptions.
*Genes having zebrafish orthologs in Ensembl.