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Table 8. Abbreviations for domain descriptions
Domain name |
Description |
Pfam accession no. |
25A_synth |
2’-5’-oligoadenylate synthase N-terminal region profile |
— |
AT_hook |
AT hook motif |
PF02178 |
CSD |
"Cold-shock" DNA-binding domain |
PF00313 |
CPSFA |
CPSF A subunit region |
PF03178 |
DEAD |
DEAD/DEAH box helicase |
PF00270 |
DIM1 |
Mitosis protein DIM1 |
PF02966 |
DSRM |
Double-stranded RNA binding motif |
PF00035 |
EFG_C |
Elongation factor G C-terminus |
PF00679 |
EFG_IV |
Elongation factor G, domain IV |
PF03764 |
GYF |
GYF Domain |
PF02213 |
Hat |
HAT (Half-A-TPR) repeat |
PF02184 |
Helicase_C |
Helicase conserved C-terminal domain |
PF00271 |
HSP70 |
Hsp70 protein |
PF00012 |
KH |
K homology domain |
PF00013 |
MIF4G |
Middle domain of eukaryotic initiation factor 4G domain |
PF02854 |
LRR |
Leu-rich repeat |
PF00560 |
Mov34 |
Mov34/MPN/PAD-1 family |
PF01398 |
Myb_DNA_binding |
Myb-like DNA-binding domain |
PF00249 |
NLS_BP |
Bipartite nuclear localization signal |
— |
NOP |
Putative snoRNA binding domain |
PF01798 |
Pro_isomerase |
Cyclophilin type peptidyl-prolyl cis–trans isomerase |
PF00160 |
Pro-rich |
Pro-rich |
— |
PWI |
PWI Domain |
PF01480 |
RNA_pol_Rpb1_R |
RNA polymerase Rpb1 C-terminal repeat |
PF05001 |
RIBOSOMAL_L7A |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
PF01248 |
RRM |
RNA recognition motif |
PF00076 |
RS |
Arginine–serine-rich domain |
— |
SART_1 |
SART-1 family |
PF003343 |
Sec63 |
Sec63 domain |
PF02889 |
SKIP_SNW |
SKIP/SNW domain |
PF02731 |
TPR |
TPR Domain |
PF00515 |
Tudor |
Tudor Domain |
PF00567 |
UCH |
Ubiquitin carboxyl-terminal hydrolase |
PF00443 |
WD40 |
WD domain, G-beta repeat |
PF00400 |
WW |
WW domain |
PF00397 |
ZF |
Zinc Finger domain |
PF04071 |