Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola

Supplemental material

• Supplemental file 1 -

  Supplemental methods/results; hierarchical clustering of RNA-seq samples from three different substrates in submerged culture at day 5 (Fig. S1); comparison of RNA-seq and qRT-PCR for two differentially regulated genes (Fig. S2); PCA analysis of ToF-SIMS spectra (Fig. S3); distribution of RNA-editing loci and RNA-editing types (Fig. S4); hierarchical clustering of RNA-seq samples from different substrates, time points and culture methods (Fig. S5).

  PDF, 317K

• Supplemental file 2 -

  Transcriptome expression levels of all Fomitopsis pinicola genes after 5-day submerged culture (Table S1).

  XLSX, 2.1M

• Supplemental file 3 -

  Position and type of all RNA-editing events (Table S2).

  XLSX, 208K

• Supplemental file 4 -

  Transcriptome expression levels of all Fomitopsis pinicola genes after 10-day and 30-day wood wafer cultures (Table S3).

  XLSX, 2.4M

• Supplemental file 5 -

  Distribution in relative proportion of wood-decay CAZymes, lignin enzymes, and cytochrome P450 (Table S4).

  XLSX, 12K

• Supplemental file 6 -

  Summary of mapping reads from each sample (Table S5).

  XLSX, 9.8K