Table 1 |.
Genome: | AaegL3 | AaegL4 | AaegL5 | AaegL5 (NCBI) |
---|---|---|---|---|
FALCON-Unzip | FALCON-Unzip + Hi-C + polish | |||
Total length (non-N bp) | 1,310,092,987 | 1,254,548,160 | 1,695,064,654 | 1,278,709,169 |
Contig number | 36,205 | 37,224 | 3,967 | 2,539 |
Contig N50 (bp) | 82,618 | 84,074 | 1,304,397 | 11,758,062 |
Contig NG50 (bp) | 85,043 | 81,911 | 1,907,936 | 11,758,062 |
Scaffold number | 4,757 | 6,206 | (N/A) | 2,310 |
Scaffold N50 (bp) | 1,547,048 | 404,248,146* | (N/A) | 409,777,670* |
GC content (%) | 38.27 | 38.28 | 38.16 | 38.18 |
Alternative | (N/A) | (N/A) | 351,566,101 | 591,941,260 |
haplotypes (bp) Alternative | (N/A) | (N/A) | 3,823 | 4,224 |
haplotypes (contigs) |
Scaffold N50 is the length of chromosome 3, N/A: not applicable