Passive immunotherapy of viral infections: ‘super-antibodies’ enter the fray

Abstract

Antibodies have been used for more than 100 years in the therapy of infectious diseases but a new generation of highly potent and/or broadly cross-reactive human monoclonal antibodies (sometimes referred to as ‘super-antibodies’) offers new opportunities for intervention. The isolation of these antibodies, which are often rarely induced in human infections, has primarily been achieved by large-scale screening for suitable donors and new single B cell approaches to human monoclonal antibody generation. Engineering the antibodies to improve half-life and effector functions has further augmented their in vivo activity in some cases. Super-antibodies offer promise for the prophylaxis and therapy of infections with a range of viruses, including those that are highly antigenically variable and those that are newly emerging or have pandemic potential. The next few years will be decisive in the realization of the promise of super-antibodies.

TOC blurb

So-called ‘super-antibodies’ are highly potent, broadly reactive antiviral antibodies that offer promise for the treatment of various chronic and emerging viruses. This Review describes how recent technological advances led to their isolation from rare infected individuals and their development for the prevention and treatment of various viral infections.

The use of antibodies to ameliorate the adverse clinical effects of microbial infection can be traced back to the late nineteenth century and the work of von Behring and Kitasato on serum therapy of diphtheria and tetanus (reviewed in REFS ^1,2). In these settings, the antibodies act to neutralize bacterial toxins. Therapies followed in which serum antibodies were targeted directly against bacterial and then viral pathogens. For viral pathogens, enriched polyclonal IgG molecules from immunized animals were shown to be effective in prophylaxis, and even post-exposure prophylaxis, for a number of viruses including hepatitis A virus, hepatitis B virus, hepatitis C virus, herpes simplex virus, measles virus, rabies virus, respiratory syncytial virus (RSV), smallpox virus and varicella zoster virus. Generally, the efficacy of antibody preparations declined with the duration of infection such that they were often regarded as poor therapeutic options. Of course, the major antiviral strategy of the twentieth century was vaccination.

Over the latter part of the twentieth and early part of the twenty-first century, there have been major developments in our understanding of and ability to manipulate antibodies. The advent of hybridoma technology in 1976 provided a reliable source of mouse monoclonal antibodies (mAbs), the first impact of which was not on antibody therapy but on the characterization of cells through the definition of cell surface markers. Broad implementation of mAbs in therapy had to wait until the development of humanized mouse antibodies and then the generation of fully human antibodies by various techniques described below. Such antibodies have been largely applied in the fields of oncology and autoimmunity. Only a single antiviral mAbs, the RSV-specific antibody palivizumab, is in widespread clinical use. The reasons for this have been discussed elsewhere^1,3–6, although perhaps the most significant reasons are the relatively high cost of production of mAbs, the difficulties of administration and a belief that antibodies are largely only effective in a prophylactic setting, which can be achieved for many viruses by vaccination.

However, as we discuss here, an increasing number of antiviral antibodies with quite remarkable properties in terms of potency and/or cross-reactivity with other viruses or strains of the same virus are being isolated. These so-called ‘super-antibodies’ are changing our understanding of what we can hope to achieve with antibodies against microbial infection in the clinic. Increased potency can greatly reduce the unit costs of treatment, make feasible alternative routes of administration and extend the effective half-life of the antibody. Increased cross-reactivity can allow us to consider targeting multiple viruses with single antibodies. Antibody engineering can impact both potency and cross-reactivity and can greatly extend half-life of super-antibodies.

In this Review, we discuss how new approaches have fueled the identification of super-antibodies, where and how such antibodies may be best applied and future directions for the field.

Super-antibody discovery

Many acute viral infections induce robust neutralizing antibody responses in the large majority of individuals. In general, these viruses show little evidence for evasion of antibody responses and we have referred to them as ‘evasion lite’ ⁷. Typically, they either display limited antigenic variability in their surface protein (or proteins) or they show considerable variability but nevertheless express immunodominant conserved epitopes. Examples of viruses in this category include measles virus, poliovirus, chikungunya virus and RSV^8–11. Presumably the life cycle of these viruses does not dictate immune evasion. For these types of viruses, the isolation of super-antibodies from immune donors has been achieved in a relatively straightforward manner^8,9,12–14. However, some viruses have evolved mechanisms to evade effective neutralizing antibody responses (termed ‘evasion strong’) and induce such responses at much lower levels. Effective responses in the context of infection with highly antigenically variable viruses refers not only to their neutralization potency but also to their effectiveness against diverse circulating global isolates, often referred to as breadth. For these viruses —including HIV, influenza virus, Ebola virus and Lassa virus — only a proportion of infected individuals, sometimes quite small, will generate broad and potent neutralizing antibody responses^15–21. Furthermore, within these individuals, potent broadly neutralizing antibody (bnAb) specificities generally only constitute a small fraction of the antigen-specific memory B cell pool.

For example, only a few percent of HIV-1-infected individuals develop broad and potent serum responses over time, and B cell cloning efforts have demonstrated that bnAbs generally comprise <1% of the HIV envelope (Env)-specific memory B cell repertoire²². Although there are probably multiple factors that contribute to the low abundance of bnAbs within these individuals, the intrinsic nature of the viral Env protein likely has a key role. The HIV Env protein has evolved a multitude of mechanisms to evade bnAb responses, including decoy forms of Env, enormous antigenic variability, an evolving glycan shield, immunodominant variable epitopes, and poorly accessible conserved epitopes²³. Furthermore, most HIV-specific bnAbs incorporate unusual features for epitope recognition, such as uncommonly long (or short) complementarity determining region 3 (CDR3) loops, insertions and deletions, tyrosine sulfation and extensive somatic hypermutation, which likely also contribute to the rarity and delayed development of bnAbs during natural infection^24–26.

In the case of influenza virus infection, the vast majority of neutralizing antibodies elicited by infection or vaccination bind to variable epitopes within the haemagglutinin (HA) globular head of the viral particles and display strain-specific neutralizing activity²⁷. Influenza virus-specific bnAbs typically target the conserved HA stem, but this region has variable immunogenicity^28–31. The relatively low frequency of bnAbs against the HA stem is perhaps due to the typically tight packing of HA trimers on the virus surface, which may limit antibody accessibility to this region. For Ebola and Lassa viruses, extensive glycosylation on the surface envelope proteins results in masking of conserved neutralizing epitopes^15,32. In cases where super-antibodies are present at low frequency within immune repertoires, large-scale donor screening and high-throughput B cell isolation platforms have proven to be critical for the discovery of super-antibodies. Over the past several years, technological advances in these two areas have led to the identification large numbers of super-antibodies, mostly from infected individuals, against a plethora of viral pathogens.

Large-scale donor screening

In the case of HIV, which has served as a prototype virus for many studies in this field ³³, systematic selection of donors with broadly neutralizing serum responses has proven to be critical for the identification of super-antibodies. Prior to 2009, the HIV field had been operating with a handful of bnAbs, all of which were limited either in breadth or in potency ³⁴. A number of factors complicated the identification of bnAbs, including the inefficiency of traditional approaches to mAb discovery, the small fraction of B cells that secrete bnAbs, and the limited availability of samples from donors who had developed broad and potent neutralizing serum responses. Beginning in 2005, the problem of limited samples was addressed by establishing donor screening programmes to identify HIV-infected individuals with broadly neutralizing serum responses to serve as source material for the generation of bnAbs^18,19,35,36. In one of the largest studies, ~1,800 HIV-1-infected individuals from Australia, Rwanda, Uganda, the United Kingdom and Zambia were screened for broadly neutralizing sera using a reduced pseudovirus panel representative of global circulating HIV-1 isolates¹⁹. A subset of individuals, termed “elite neutralizers”, were identified that exhibited exceptionally broad and potent neutralizing serum responses and were therefore prioritized for bnAb isolation.

Over the past eight years, mining of these and similar samples has led to the identification of dozens of remarkably broad and potent HIV super-antibodies^37–41. Careful selection of donors with desirable serum profiles has also enabled the isolation of rare super-antibodies to influenza virus, RSV, human metapneumovirus (HMPV), rabies virus and Zika virus^12,42–44. For example, the pan-influenza A virus-neutralizing mAb FI6 and the RSV and HMPV cross-neutralizing mAb MPE8 were isolated from donors who were selected on the basis of their strong heterotypic serum responses^12,42. Similarly, two pan-lyssavirus neutralizing mAbs, called RVC20 and RVC58, were isolated from the memory B cells of four donors who exhibited potent serum neutralizing activity against multiple lyssavirus species⁴³.

High-throughput human B cell isolation technologies

Human antiviral neutralizing mAbs have been isolated using various different technologies, including combinatorial display libraries, human immunoglobulin transgenic mice and single B cell isolation methods (Fig. 1). Although all of these technologies have proven valuable for mAb generation, the recent burst in super-antibody discovery has primarily been driven by advances in single B cell-based methods. There are several possible reasons for this, including inefficiencies in combinatorial library generation and interrogation (leading to the loss of rare clones), altered binding characteristics of antibody fragments produced in heterologous expression systems (for example, Escherichia coli or yeast), constraints on the generation of suitable recombinant antigens for immunization or library selections, the loss of native heavy and light chain pairing during immune library generation, and inherent differences between the adaptive immune systems of humanized mice and humans⁴⁵.

Figure 1. Technologies for monoclonal antibody generation.

a) Combinatorial display libraries. Human antibody heavy and light chain genes are amplified by PCR, and antibody fragments are displayed on the surface of a particle or cell in which the antibody genes are found (such as phage, yeast or mammalian cells^142–145). Successive rounds of enrichment are performed to select for clones that bind to the target antigen. Genes encoding antibodies of interest are cloned into human IgG expression vectors to produce monoclonal antibodies (mAbs). b) Human immunoglobulin transgenic mice are generated by introducing human immuoglobulin loci into the mouse genome^146,147. Upon immunization, the transgenic mice produce fully human antigen-specific antibodies. The B cells harvested from the immunized mice are fused with myeloma cells to generate antibody-secreting hybridomas, which are then screened for binding or functional activity. c) Single B cell cloning. Antigen-specific memory B cells or plasmablasts are single-cell sorted by flow cytometry and cognate heavy and light chain variable genes are amplified by RT-PCR^57,58,148. The antibody variable genes are cloned into human IgG expression vectors to produce mAbs. d) Memory B cell immortalization. Memory B cells are immortalized by Epstein–Barr virus and B cell culture supernatants are screened for binding or functional activity¹⁴⁹. Positive cultures are sub-cloned by limiting dilution. e) Memory B cell culture. Single B cells are activated and cultured, and B cell supernatants are screened for binding or functional activity^37,150. Antibody variable genes are amplified from clones of interest by PCR and cloned into human IgG expression vectors to produce mAbs.

Over the past decade, several technological breakthroughs in the B cell cloning arena have fueled super-antibody identification. One of these advances came in 2009, when direct functional screening of thousands of B cell clones from an HIV elite neutralizer led to the isolation of two super-antibodies, PG9 and PG16, which were about an order of magnitude more potent than first-generation bnAbs³⁷. Notably, PG9 and PG16 bind poorly to recombinant Env proteins and thus would not have been identified without direct functional screening of B cell supernatants. To date, many dozens of HIV-specific bnAbs targeting a diverse range of epitopes have been identified using functional screening approaches^39,46–48. Highly potent super-antibodies to RSV, HMPV, Lassa virus and human cytomegalovirus (HCMV) have also been discovered using high-throughput functional screening technologies^12,13,49,50 (Table 1).

Table 1.

Anti-viral SuperAbs

Virus	Prototypic SuperAb	Similar antibodies*	Antigenic region	Antibody isolation technology
HIV	PG9, PGT145	PG16, PGT141-144, CH01-04, PGDM1400–1412, CAP256- VRC26.01-12	V2 apex	Human B cell isolation
	VRC01	VRC02, VRC03, 8ANC131, 8ANC37, 8ANC134, NIH45-46, 3BNC60, BNC62, 3BNC117, 12A12, 12A21,12A30, VRC-PG04, VRC-CH31, VRC27, VRC07-523, N6	CD4 binding site	Human B cell isolation
	PGT121, PGT128, PGT135	PGT122, PGT123, PGT125-PGT127, PGT130, PGT131, PGT136, PGT137, 10-1074	V3 glycan	Human B cell isolation
	PGT151, 35O22, 8ANC195	PGT152-158, ACS202, N123-VRC34.01	gp120/gp41 interface	Human B cell isolation
	10E8		MPER	Human B cell isolation
Influenza	C05	F045-092, 641 I-9	HA head	Human B cell isolation, phage display
	FI6	MEDI8852, CR9114, 39.29, 81.39, CT149, 56.a.09, 31.b.09, 16.a.26, 31.a.83	HA stem	Human B cell isolation
RSV/HMPV	MPE8	ADI-14448, 25P13	Site III	Human B cell isolation
RSV	D25	D25, AM22, 5C4, ADI-15618	Site ø	Human B cell isolation
HCMV	9I6, 8I21	1F11, 2F4, 6G4	Pentameric complex	Human B cell isolation
Rabies	RVC58		Site III	Human B cell isolation
	RVC20		Site I	Human B cell isolation
Dengue/Zika	A11, C8	A11, C8, C10, B2, B7, C4	E-dimer interface	Human B cell isolation
	Z004	Z028, Z001, Z006, Z010, Z031, Z035, Z038, Z014, ZKA-190, ADI- 24192, ADI-24232, ADI-24227, ADI-24238	DIII lateral ridge	Human B cell isolation
Ebola	ADI-15878	6D6, ADI-15742, CA45, FVM09	Fusion loop	Human or macaque B cell isolation
MERS	LCA60, REGN3051, REGN3048		Receptor-binding domain	Human B cell isolation, humanized mice
Lassa virus	8.9F		Quaternary GPC-C epitope	Human B cell isolation
	37.2D	25.6A	Quaternary GPC-B epitope	Human B cell isolation
	25.10C, 12.1F		Quaternary GPC-A epitope	Human B cell isolation

^*This list of antbodies is not exhaustive and is caveated by the fact that different neutralization assays can give different results.

Similar to PG9 and PG16, these super-antibodies were isolated by screening B cell supernatants based on their capacity to neutralize infection in vitro and were subsequently found to react poorly with currently available recombinant envelope proteins. In the case of RSV, this approach led to the isolation of the highly potent mAb D25, which binds to an epitope that is exclusively expressed on the prefusion conformation of RSV fusion (F) glycoprotein^49,51. An engineered variant of mAb D25 (MEDI8897), which exhibits 50–100 times greater neutralization potency than palivizumab, is now being tested in clinical trials for the prevention of RSV-associated disease in high-risk infants. A second RSV prefusion F-specific super-antibody, which cross-neutralizes several different paramyxoviruses including HMPV, was also isolated by screening B cell supernatants for neutralizing activity¹² (Table 1).

In the case of HCMV, direct functional screening enabled the isolation of highly potent super-antibodies specific for conformational epitopes within the gH–gL–UL128–UL130–UL131A pentamer complex, which was not previously known to be a target for neutralizing antibodies¹³. Direct functional screening approaches have also led to the discovery of potent super-antibodies to Middle East respiratory syndrome coronavirus (MERS-CoV), Ebola virus, influenza virus, chikungunya virus, rabies virus and the poxvirus family^{9,42,43,52–56}. Notably, in the case of MERS-CoV, only a single B cell culture out of 4,600 screened showed neutralizing activity⁵³. Similarly, the pan-influenza A virus neutralizing mAb FI6 was isolated by testing 104,000 plasma cells from eight immune donors⁴². Finally, only two out of 500 mAbs that were selected based on their ability to neutralize rabies virus showed cross-neutralizing activity against multiple lyssavirus species⁴³. These examples clearly illustrate that exhaustive interrogation of immune repertoires is often required for the identification of rare cross-neutralizing super-antibodies.

A second breakthrough in the HIV antibody field followed the development of technology for antigen-specific single B cell sorting^57–59. This approach, coupled with the use of rationally designed Env probes, allowed for the discovery of two new potent HIV bnAbs that target the conserved CD4 binding site^60,61 (Table 1). Following this discovery, several other potent bnAbs against the CD4 binding site were isolated using similar approaches^38,62,63. Recently, advances in the generation of recombinant native-like HIV Env trimers have enabled the identification of exceptionally potent “PG9-class” bnAbs⁴⁰.

Many HIV super-antibodies have now been generated using single B cell sorting technology^{38,40,60,62,63}. The use of fluorescently labeled probes to sort antigen-specific memory B cells has also allowed for the discovery of highly potent super-antibodies to Ebola virus, RSV, human papilloma virus (HPV), Zika virus and influenza virus^{11,30,31,44,64,65}. In the case of Ebola virus, a large-scale single B cell cloning effort led to the isolation of several hundred mAbs specific for Ebola virus surface glycoprotein (GP), two of which showed potent pan-Ebola virus neutralizing activity and protective efficacy^64,66. A similar effort in the RSV field allowed for the isolation of several prefusion F protein-specific mAbs that show over 100 times more potent neutralizing activity than palivizumab¹¹. In addition, multiple groups have used clever dual antigen labeling strategies to identify potent bnAbs to HIV, influenza virus, Ebola virus and HPV^{30,31,40,65,67,68}. The structures of several super-antibodies bound to their viral targets are shown in Fig 2. Finally, a recent report showed that bnAbs to HIV can be readily elicited in cows using a single Env trimer immunogen and that this induction depends on the long heavy chain CDR3 loops of the bovine immunoglobulin repertoire ⁶⁷. It is possible that this repertoire may provide advantages in generating super-antibodies against other pathogens.

Figure 2. Structures of super-antibodies bound to their target antigens.

a) Cryoelectron microscopy structure of the broadly neutralizing anti-HIV-1 antibody PGT145 in complex with a recombinant HIV envelope trimer¹⁵¹. PGT145 binds to a glycan-dependent quaternary epitope at the trimer apex¹⁵². b) Crystal structure of the influenza virus group 1/group 2 neutralizing antibody CR9114 in complex with influenza virus haemagglutinin (HA)¹⁵³. CR9114 recognizes a highly conserved epitope in the HA stem^154,155. c) Crystal structure of the respiratory syncytial virus (RSV) and human metapneumovirus (HMPV) cross-neutralizing antibody MPE8 in complex with a stabilized RSV prefusion fusion glycoprotein trimer¹⁵⁶. d) Crystal structure of the Zika virus and dengue virus cross-neutralizing antibody C8 in complex with a soluble Zika virus envelope ectodomain⁸⁵. C8 targets a quaternary epitope that bridges two envelope protein subunits.

Vaccination or infection-induced antibody-secreting cell (ASC) responses have also proven to be a rich source of antigen-specific antibodies. Following early studies that showed a transient but large population of ASCs appears in peripheral blood 5–7 days after tetanus toxoid booster vaccination ⁶⁹, it was shown that influenza virus vaccination produced a similar ASC response and that the large majority of mAbs cloned from these cells bound with high affinity to influenza virus, providing a proof-of-concept that the ASC response could be exploited to rapidly generate antigen-specific antibodies against any immunizing antigen ⁷⁰. To date, plasmablast cloning has led to the isolation of mAbs against many different viruses, including dengue virus, Zika virus, HIV, influenza virus, vaccinia virus and rotavirus^29,71–76.

One of the advantages of the plasmablast approach is that antigen baiting is not required for B cell sorting, thereby allowing for the isolation of antibodies that target epitopes that are poorly expressed on recombinant antigens. For example, in the case of dengue virus, potent bnAbs targeting E-dimer dependent epitopes were isolated using this approach⁷². However, it is important to emphasize that the ability to isolate super-antibodies using this method will depend on several factors. First, during a primary infection, the ASC population will be mainly composed of activated, low-affinity naive B cells (rather than affinity-matured memory B cells), making the possibility of identifying super-antibodies extremely unlikely. Second, in the context of a booster vaccination or secondary infection with an antigenically similar virus, most of the plasmablast response will be directed against immunodominant epitopes, which in many cases are not targeted by effective neutralizing antibodies. In such cases, exhaustive cloning, production and characterization of the plasmablast-derived mAbs would likely be required to identify rare super-antibodies. In contrast, secondary infection with an antigenically related but sufficiently divergent virus can drive the preferential expansion of B cells that target highly conserved epitopes, as exemplified by the unusually high frequency of bnAbs induced in donors who were infected with the novel H1N1 influenza virus in 2009^29,75. In principle, one could use this type of approach for the generation of super-antibodies in humanized mice or other animal models using suitably designed immunogens and immunization regimens.

Rapid response platforms for emerging viruses

Over the past two decades, humanity has faced a new emerging, or re-emerging, viral threat almost every year, including severe acute respiratory syndrome coronavirus (SARS), West Nile virus, pandemic influenza virus, Ebola virus, MERS-CoV and Zika virus. Due to their comparatively fast path to approval and generally favourable safety profiles, mAb therapies represent a promising alternative to vaccines and small molecule drugs for the treatment and prevention of emerging viral threats. Recently, several laboratories have demonstrated the feasibility of identifying, characterizing and scaling-up production of highly potent mAbs in remarkably short timeframes.

In response to the 2014–2015 MERS-CoV outbreak, two different groups illustrated the power of their mAb discovery platforms by isolating highly potent MERS-specific mAbs, producing the mAbs in gram quantities, and testing the lead mAbs in animal models at an unprecedented speed^53,77. In one of these studies, a single highly potent MERS-CoV neutralizing mAb was identified from the memory B cells of a convalescent donor using a high-throughput functional screening approach⁵³. This mAb, called LCA60, showed both pre- and post-exposure protection in a mouse model of MERS-CoV infection. Importantly, it only took the authors four months from the initial B cell screening to the development of a stable cell line that produces the neutralizing mAb at 5 g/L. In the second study, human immunoglobulin transgenic mice were immunized with the MERS-CoV Spike protein and then used to generate a panel of potent MER-CoV-specific neutralizing mAbs within several weeks⁷⁷. The authors also quickly generated a humanized mouse model of MERS-CoV infection, which was used to demonstrate the therapeutic efficacy of their mAbs.

In a third study, vaccination of transchromosomal cows engineered to produce fully human IgG molecules with MERS-CoV was shown to yield high serum titres of MERS-CoV-specific neutralizing antibodies⁷⁸. Importantly, administration of the purified polyclonal transchromosomal bovine human IgG to mice either 12 hours before or 24 and 48 hours after MERS-CoV infection resulted in a significant reduction in viral lung titres. Transchromosomal bovines have also been used to rapidly generate polyclonal neutralizing antibodies to Hanta virus, Venezuelan equine encephalitis virus and Ebola virus^79–81, demonstrating the feasibility of using this platform to rapidly generate therapeutics to combat emerging viral threats. The antibodies arising from transchromosomal cows are polyclonal to date but there is potential for mAb isolation.

Between 2015 and 2016, several groups responded to the 2014–2015 Ebola virus outbreak by swiftly generating highly potent Ebola virus GP-specific neutralizing mAbs from the memory B cells of convalescent donors^{54–56,64,66}. Many of these mAbs showed potent post-exposure therapeutic efficacy against either Ebola or Bundibugyo virus in animal models and a subset showed protective efficacy against multiple Ebola virus strains^54,55,64,66. Similarly, several groups have recently reported on the isolation of potent Zika virus-specific neutralizing mAbs from human donors^14,44,82,83. Notably, one of these neutralizing mAbs, called ZIKV-117, showed post-exposure protection against Zika virus in both pregnant and non-pregnant mice⁸².

In certain cases, the availability of super-antibodies that target highly conserved epitopes may shorten timelines further by bypassing the need for mAb discovery. For example, it was recently shown that a subset of dengue virus-specific mAbs potently cross-neutralize Zika virus^84–86. These bnAbs — perhaps carrying Fc mutations that ablate Fc receptor binding to avoid potential for antibody-dependent enhancement¹⁴ — could immediately be used for prophylaxis for pregnant women living in Zika virus endemic regions. Notably, cocktails of super-antibodies targeting different epitopes, or bispecific or trispecific super-antibody constructs, will likely be required to prevent neutralization escape^87–93.

Antibodies in prophylaxis and therapy

Antibodies can function against viruses by several mechanisms, primarily divided into activities against free virus particles and activities against infected cells. Neutralization, measured in vitro as the ability of antibody to prevent viral entry into target cells without a requirement for involvement of any other agents, is an activity against free virions that has been most correlated with protection in vivo. Activities against infected cells generally depend on Fc effector functions and involve host effector cells. They include antibody-dependent cellular cytotoxicity (ADCC), complement-dependent cytotoxicity (CDC) and antibody-dependent cellular phagocytosis (ADCP). It is presumed that these latter activities are likely to be important in therapy using antibodies. Since neutralization frequently correlates with the ability to bind to native structures on the virion surface, it can give some indication of the ability of antibodies to mediate effector activities such as ADCC and ADCP. The potency of super-antibodies is then often estimated from neutralization measurements, although ultimately it is of course in vivo activity that is crucial.

Prophylaxis

Vaccination is the most effective and low-cost method of preventing viral disease. However, the development of effective vaccines against many important viral pathogens — including HIV, RSV, hepatitis C virus, dengue virus and HCMV — has been met with limited success. Furthermore, vaccine development is a long complex process, often lasting 10–15 years, making immunization an impractical means of protecting individuals from new emerging viral threats, unless pan-virus family vaccines can be developed. For example, if antibodies can be identified that potently neutralize existing strains of Ebola virus, or even Ebola and Marburg filoviruses, then one could anticipate that a vaccine templated from the antibodies would be effective even against emerging strains of Ebola virus. However, at the current time, passive antibody prophylaxis represents a promising alternative to vaccination for a number of viral infections.

Currently, three purified polyclonal hyperimmune globulins derived from human donors immune to hepatitis B virus, HCMV or varicella zoster virus are on the market for the prevention of serious diseases associated with these viruses. A rabies virus-specific immune globulin, combined with vaccination, is also available for post-exposure prophylaxis. In 1998, palivizumab — a humanized mAb that targets the RSV F protein — became the first US Food and Drug Administration approved antiviral mAb. Palivizumab soon replaced RSV hyperimmune globulin (RespiGam) for the prevention of severe RSV-associated disease in high-risk infants. However, although palivizumab is more specific and 50–100 times more potent than RespiGam, the cost associated with the required dosing makes its use impractical for all infants⁹⁴. A second-generation RSV-specific mAb, which shows up to 50 times greater neutralization potency than palivizumab and contains substitutions in the Fc domain that extend its serum half-life, is currently in phase 2 clinical trials for the prevention of severe RSV-associated disease in all infants⁹⁵ (Table 2).

Table 2.

Anti-viral mAbs in clinical development

Antibody	Virus	Antibody isolation technology	Target	Stage of development	Manufacturer	Indication
Porgaviximab	Ebola	Immunization/Chimerization	Viral envelope glycoprotein	Phase I/II	Mapp Biopharmaceutical; LeafBio	Post-exposure treatment of Ebola virus infection
MBL HCV1	HCV	Humanized mice	HCV E2 glycoprotein	Phase II	MassBiologics	Prevention of HCV recurrence in patients receiving a liver transplant
PRO 140	HIV	Immunization/Humanization	CCR5	Phase III	Progenics Pharmaceuticals	Treatment of HIV-1 infection
Ibalizumab	HIV	Immunization/Humanization	CD4	Phase III	TaiMed Biologics	Treatment of HIV-1 infection
UB 421	HIV	Immunization/Humanization	CD4	Phase II	United Biomedical	Treatment of HIV-1 infection
VRC01-LS	HIV	Human B cell isolation	HIV gp120	Phase I	National Institute of Allergy and Infectious Diseases	Prevention of HIV-1 infection
VRC01	HIV	Human B cell isolation	HIV gp120	Phase I	National Institute of Allergy and Infectious Diseases	Treatment of HIV-1 infection
3BNC117-LS	HIV	Human B cell isolation	HIV gp120	Phase I	Rockefeller University	Treatment of HIV-1 infection
10-1074 and 3BNC117	HIV	Human B cell isolation	HIV gp120	Phase I	Rockefeller University	Treatment of HIV-1 infection
PGT121	HIV	Human B cell isolation	HIV gp120	Phase I	International AIDS Vaccine Initiative	Treatment and prevention of HIV-1 infection
PGDM1400 and PGT121	HIV	Human B cell isolation	HIV gp120	Phase I	International AIDS Vaccine Initiative	Treatment and prevention of HIV-1 infection
MB 66	HIV/HSV	Human B cell isolation	HIV gp120, HSV glycoprotein D	Phase I	Mapp Biopharmaceutical	Prevention of HIV-1 and HSV sexual transmission
VIS 410	Influenza	Unknown	Influenza hemagglutinin	Phase II	Visterra	Treatment and prevention of influenza A virus infection
MHAA 4549A	Influenza	Human B cell isolation	Influenza virus haemagglutinin	Phase II	Genentech	Treatment of influenza A virus infection
CT P27	Influenza	Human B cell isolation	Influenza virus haemagglutinin	Phase II	Celltrion	Treatment and prevention of influenza A virus infection
Diridavumab	Influenza	Phage display	Influenza virus haemagglutinin	Phase II	National Institute of Allergy and Infectious Diseases	Treatment and prevention of influenza A virus infection
CR8020	Influenza	Human B cell isolation	Influenza virus haemagglutinin	Phase II	Crucell	Treatment and prevention of influenza A virus infection
RG 6024	Influenza	Human B cell isolation	Influenza virus haemagglutinin	Phase I	Genentech	Treatment of influenza B virus infection
MEDI 8852	Influenza	Human B cell isolation	Influenza virus haemagglutinin	Phase II	MedImmune	Treatment of influenza A virus infection
TCN 032	Influenza	Human B cell isolation	Influenza M2e protein	Phase II	Theraclone Sciences; Zenyaku Kogyo	Treatment of influenza A virus infection
m 102.4	Nipah and Hendra virus	Phage display	Viral envelope glycoprotein G	Phase I	Profectus Biosciences, Inc.	Prevention and treatment of Nipah and Hendra virus infections
Rabimabs	Rabies	Immunization	Viral envelope G protein	Phase I/II	World Health Organization; Zydus Cadila	Treatment and prevention of rabies
RAB-1	Rabies	Humanized mice	Viral envelope G protein	Approved	Serum Institute of India; MassBiologics	Post-exposure prophylaxis of rabies
Foravirumab	Rabies	Phage display, Human B cell isolation	Viral envelope G protein	PhaseII/III	Crucell; Sanofi Pasteur	Post-exposure prophylaxis of rabies
Palivizumab	RSV	Immunization/Humanization	Viral fusion protein	Approved	MedImmune	Prophylaxsis in high-risk infants
MEDI 8897	RSV	Human B cell isolation	Viral fusion protein	Phase II	MedImmune	Prophylaxsis in high-risk infants

Although palivizumab is the only commercially available mAb for the prevention of a viral disease, there are multiple antiviral mAbs in preclinical and clinical development that have shown pre-exposure efficacy in animal models. For example, the potent MERS-CoV-specific mAbs described above were shown to prophylactically protect humanized mice against MERS-associated disease. Similarly, mAbs to chikungunya virus, influenza virus, HIV and Ebola virus have shown potent prophylactic efficacy in animal models^{9,85,96–102}. Recently, a broadly neutralizing anti-Zika virus mAb (ZIKV-117) was shown to protect against maternal-fetal transmission in a mouse model of Zika virus infection⁸². If this observation translates to humans, prophylaxis with ZIKV-117 or similar neutralizing mAbs may be a promising means of protecting at-risk pregnant women against Zika virus infection and fetal transmission.

In the case of HIV, multiple studies have shown that passively administered neutralizing mAbs provide protection against intravenous, vaginal, rectal and oral challenge in non-human primate and mouse models^{99–101,103–106}. A large ongoing study (the antibody mediated prevention (AMP) study) will assess the ability of the VRC01 mAb specific for the CD4 binding site to decrease the risk of HIV acquisition in humans (See Further reading). Although animal studies have provided proof-of-principle that a vaccine capable of inducing sufficient titres of bnAbs could prevent the establishment of HIV infection in humans, and the AMP study will investigate this directly, the design of immunogens that efficiently elicit these rare antibodies remains a formidable challenge. To bypass the challenges associated with active vaccination against HIV, a number of groups have proposed alternative strategies based on vector-mediated antibody gene transfer to express bnAbs in vivo¹⁰⁷. Unlike traditional passive immunization, which would require long-term repeated treatment with bnAbs, vectored immunoprophylaxis only involves a single injection and enables continuous and sustained delivery of antibodies. In 2009, pioneering work demonstrated that vector-mediated delivery of antibody-like molecules can provide vaccine-like protection against SIV challenge in non-human primate models¹⁰⁸.

Subsequent studies have shown that vectored immunoprophylaxis is also compatible with full-length IgG molecules and CD4-like molecules^109–111. If the preclinical results in mice and macaques translate to humans, vectored antibody gene delivery strategies could provide an alternative form of prophylaxis against HIV and other challenging vaccine targets such as hepatitis C virus, pandemic influenza virus and malaria. Recently, non-viral vector nucleic acid delivery technologies have also been developed to obviate the potential safety issues associated with viral vector-mediated delivery, such as long-term persistence and potential viral DNA integration into the host genome^112–117. In a recent study, it was shown that the administration of lipid encapsulated, nucleoside-modified mRNAs encoding the heavy and light chain genes of the broadly neutralizing HIV-1-specific antibody VRC01 to humanized mice resulted in high serum antibody concentrations and protection against intravenous HIV-1 challenge¹¹⁴.

Similar proof-of-concept studies have also been performed using synthetic DNA plasmid-mediated antibody gene transfer^112,113. In one such study, synthetic DNA plasmids encoding cross-neutralizing anti-dengue virus antibodies were delivered to mice by electroporation and resulted in biologically relevant levels of serum antibody¹¹². Importantly, a single intramuscular injection of plasmid DNA conferred protection against severe dengue disease in a mouse model. Although several technical challenges remain to be addressed, such as enhancing in vivo antibody expression levels and reducing the potential for immunogenicity, these studies demonstrate the feasibility of using plasmid DNA and modified mRNA-based antibody delivery technologies for passive immunotherapy.

Therapy

Conventional wisdom says that antibodies are effective if present before or shortly after viral exposure but their efficacy declines markedly once infection is established. For example, the anti-RSV antibody palivizumab is effective in the clinic prophylactically but not therapeutically ¹¹⁸. However, there are indications that the dogma may be challenged by super-antibodies. An example is the ability of a new generation of bnAbs against HIV to strongly impact ongoing infection in animal models ^87,119,120, in which an earlier generation of less potent mAbs had very limited effects ¹²¹. This likely reflects the increased neutralization potency of the super-antibodies but also the increased breadth of neutralization that may restrict escape pathways ¹¹⁹. A number of super-antibodies are now being evaluated in humans for their activities against established HIV infection^122–126 (Table 2). Initial results are interesting, providing for example an indication of enhanced immune responses following bnAb administration ¹²⁷. The emerging results will be followed closely, including in the context of combining bnAbs with drugs and other antiviral agents to attempt HIV cure.

For other viruses, clear evidence of a strong therapeutic effect for super-antibodies has not been gathered yet. A number of cases such as antibody treatment of rabies virus and Junin virus infections ^43,128 are probably better interpreted as post-exposure prophylaxis rather than therapy of established infection. Two promising examples of possible therapy are the successful treatment of Ebola virus- or Lassa virus-infected monkeys with mAbs once symptoms have appeared ^89,129. Unfortunately, no definitive evidence of the efficacy of mAbs in Ebola or Lassa-symptomatic humans yet exists.

Camelid-derived single-domain antibodies (sdAbs), which are comprised of a single heavy-chain variable domain, represent a promising new class of antibody-based therapeutics for RSV and other viruses that cause lower respiratory tract infections ^130–133. Due to their small size and high solubility and stability, sdAbs can be rapidly delivered to the site of infection via inhalation. Notably, a neutralizing anti-RSV sdAb (ALX-0171) that targets an epitope overlapping that bound by palivizumab recently showed a trend towards a therapeutic effect in a phase I/IIa clinical trial based on reduced viral loads and clinical symptoms in hospitalized RSV-infected infants. Prefusion F protein-specific sdAbs that show up to 180,000 times greater neutralization potency than ALX-0171 have recently been identified and may offer even greater therapeutic benefit ¹³³.

Practical considerations arising with super-antibodies

Intuitively, the enhanced potency of super-antibodies is immediately recognized as beneficial in antibody prophylaxis and therapy. However, there are also a number of additional effects from this enhanced potency that may not be instantly appreciated and that can be further strengthened by antibody engineering. For example, enhanced potency means that less antibody needs to be used and this can allow easier to develop low-concentration subcutaneous administration, rather than more difficult to develop high-concentration subcutaneous formulations or less convenient (low concentration) intravenous administration. Enhanced potency also means that the life-time of effective antibody following administration is extended, thereby requiring fewer administrations to maintain a useful protective or therapeutic effect. Antibody engineering can also extend half-life significantly ^95,134–139 so that for the most potent super-antibodies, one could envisage requiring administrations perhaps only every 3–6 months for efficacy. Antibody engineering can also deliver greater efficacy through enhanced Fc effector function ^140,141.

Conclusions

The deployment of antibodies as antiviral agents has progressed through a number of stages over the years, corresponding to increasing levels of potency of the reagent administered. It began with immune serum over a century ago, then to polyclonal antibodies, then mAbs and now into highly potent human mAbs dubbed super-antibodies. Thanks to research that has been primarily carried out in the cancer field, technologies have been developed to endow these super-antibodies with enhanced in vivo function.

Will super-antibodies change the landscape of antiviral prophylaxis and therapy? The answer to this question will depend on a number of factors, including, first, the rapidity of development of antiviral vaccines; vaccines will likely remain the cheapest and most effective antiviral measure but some viruses such as HIV present a huge vaccine challenge. Second, the effective cost of antibody treatment, which incorporates not only manufacturing cost but also the durability of administered antibody and the route of administration. Third, the success of antibodies in the treatment of established viral infections. Particularly in the therapeutic setting, the answers can only be obtained with clinical trials using the best super-antibodies available.

GLOSSARY

Humanized mouse antibody

A genetically engineered mouse antibody in which the protein sequence has been modified to increase its similarity to human antibodies, thereby decreasing its potential immunogenicity.

Transchromosomal cows

Cows that have been genetically modified to incorporate human chromosomes so that upon immunization they generate human antibodies.

Antibody-dependent cellular cytotoxicity

A mechanism by which Fc receptor-bearing effector cells such as natural killer (NK) cells recognize and kill antibody-coated target cells, such as virus-infected cells. The Fc portions of the coating antibodies interact with an Fc receptor (e.g. FcγRIII; also known as CD16 that is expressed by NK cells) thereby initiating a signalling cascade that results in the release of 22 cytotoxic granules (containing perforin and granzyme B) from the effector cell, which lead to cell death of the antibody-coated cell.

Complement-dependent cytotoxicity

A mechanism of antibody-mediated immunity whereby the association of antibody on a target cell surface leads to binding of the complement component C1q and triggering of the classical complement cascade. The cascade leads to elimination of taeget cells by a number of mechanisms including the formation of the membrane attack complex, the cytolytic end product of the complement cascade.

Hyperimmune globulins

An antibody preparation generated from the plasma of donors with high titers of antibody against a specific pathogen or antigen. Hyperimmune globulins are available against rabies, hepatitis B and varicella-zoster viruses amongst other viruses.