Abstract
Mitochondrial DNA (mtDNA) from triploid parthenogenetic geckos of the Heteronotia binoei complex varies in size from 17.2 to 27.6 kilobases (kb). Comparisons of long vs. short genomes using restriction endonucleases revealed a series of tandem direct duplications ranging in size from 1.2 to 10.4 kb. This interpretation was supported by transfer-hybridization experiments which also demonstrated that coding sequences were involved. Some of the duplications have been modified by deletion and restriction site changes, but no other rearrangements were detected. Analysis of the phylogenetic and geographic distribution of length variation suggests that duplications have arisen repeatedly within the parthenogenetic form of H. binoei. The parthenogens, and thus the duplications, are of recent origin; modifications of the duplicated sequences, particularly by deletion, has therefore been rapid. The absence of duplications from the mtDNA of the diploid sexual populations of H. binoei reinforces the correlation between nuclear polyploidy and duplication of mtDNA sequences reported for other lizards. In comparison to the genomes of sexual H. binoei and of most other animals, the mtDNA of these parthenogenetic geckos is extraordinarily variable in length and organization.
Full Text
The Full Text of this article is available as a PDF (2.7 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Attardi G. Animal mitochondrial DNA: an extreme example of genetic economy. Int Rev Cytol. 1985;93:93–145. doi: 10.1016/s0074-7696(08)61373-x. [DOI] [PubMed] [Google Scholar]
- Bentzen P., Leggett W. C., Brown G. G. Length and restriction site heteroplasmy in the mitochondrial DNA of american shad (alosa sapidissima). Genetics. 1988 Mar;118(3):509–518. doi: 10.1093/genetics/118.3.509. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bermingham E., Lamb T., Avise J. C. Size polymorphism and heteroplasmy in the mitochondrial DNA of lower vertebrates. J Hered. 1986 Jul-Aug;77(4):249–252. doi: 10.1093/oxfordjournals.jhered.a110230. [DOI] [PubMed] [Google Scholar]
- Boyce T. M., Zwick M. E., Aquadro C. F. Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy. Genetics. 1989 Dec;123(4):825–836. doi: 10.1093/genetics/123.4.825. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brown W. M. Polymorphism in mitochondrial DNA of humans as revealed by restriction endonuclease analysis. Proc Natl Acad Sci U S A. 1980 Jun;77(6):3605–3609. doi: 10.1073/pnas.77.6.3605. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buroker N. E., Brown J. R., Gilbert T. A., O'Hara P. J., Beckenbach A. T., Thomas W. K., Smith M. J. Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model. Genetics. 1990 Jan;124(1):157–163. doi: 10.1093/genetics/124.1.157. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clark-Walker G. D. In vivo rearrangement of mitochondrial DNA in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1989 Nov;86(22):8847–8851. doi: 10.1073/pnas.86.22.8847. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clayton D. A. Replication of animal mitochondrial DNA. Cell. 1982 Apr;28(4):693–705. doi: 10.1016/0092-8674(82)90049-6. [DOI] [PubMed] [Google Scholar]
- Clayton D. A. Transcription of the mammalian mitochondrial genome. Annu Rev Biochem. 1984;53:573–594. doi: 10.1146/annurev.bi.53.070184.003041. [DOI] [PubMed] [Google Scholar]
- Densmore L. D., Wright J. W., Brown W. M. Length variation and heteroplasmy are frequent in mitochondrial DNA from parthenogenetic and bisexual lizards (genus Cnemidophorus). Genetics. 1985 Aug;110(4):689–707. doi: 10.1093/genetics/110.4.689. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Garey J. R., Wolstenholme D. R. Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNA(serAGN) that contains a dihydrouridine arm replacement loop, and of serine-specifying AGA and AGG codons. J Mol Evol. 1989 May;28(5):374–387. doi: 10.1007/BF02603072. [DOI] [PubMed] [Google Scholar]
- Hale L. R., Singh R. S. Extensive variation and heteroplasmy in size of mitochondrial DNA among geographic populations of Drosophila melanogaster. Proc Natl Acad Sci U S A. 1986 Nov;83(22):8813–8817. doi: 10.1073/pnas.83.22.8813. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haucke H. R., Gellissen G. Different mitochondrial gene orders among insects: exchanged tRNA gene positions in the COII/COIII region between an orthopteran and a dipteran species. Curr Genet. 1988 Nov;14(5):471–476. doi: 10.1007/BF00521271. [DOI] [PubMed] [Google Scholar]
- Hixson J. E., Brown W. M. A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications. Mol Biol Evol. 1986 Jan;3(1):1–18. doi: 10.1093/oxfordjournals.molbev.a040379. [DOI] [PubMed] [Google Scholar]
- Hyman B. C., Beck J. L., Weiss K. C. Sequence amplification and gene rearrangement in parasitic nematode mitochondrial DNA. Genetics. 1988 Nov;120(3):707–712. doi: 10.1093/genetics/120.3.707. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hyman B. C., Slater T. M. Recent appearance and molecular characterization of mitochondrial DNA deletions within a defined nematode pedigree. Genetics. 1990 Apr;124(4):845–853. doi: 10.1093/genetics/124.4.845. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jacobs H. T., Asakawa S., Araki T., Miura K., Smith M. J., Watanabe K. Conserved tRNA gene cluster in starfish mitochondrial DNA. Curr Genet. 1989 Mar;15(3):193–206. doi: 10.1007/BF00435506. [DOI] [PubMed] [Google Scholar]
- Johansen S., Guddal P. H., Johansen T. Organization of the mitochondrial genome of Atlantic cod, Gadus morhua. Nucleic Acids Res. 1990 Feb 11;18(3):411–419. doi: 10.1093/nar/18.3.411. [DOI] [PMC free article] [PubMed] [Google Scholar]
- La Roche J., Snyder M., Cook D. I., Fuller K., Zouros E. Molecular characterization of a repeat element causing large-scale size variation in the mitochondrial DNA of the sea scallop Placopecten magellanicus. Mol Biol Evol. 1990 Jan;7(1):45–64. doi: 10.1093/oxfordjournals.molbev.a040586. [DOI] [PubMed] [Google Scholar]
- Moritz C., Brown W. M. Tandem duplication of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA. Science. 1986 Sep 26;233(4771):1425–1427. doi: 10.1126/science.3018925. [DOI] [PubMed] [Google Scholar]
- Moritz C., Brown W. M. Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards. Proc Natl Acad Sci U S A. 1987 Oct;84(20):7183–7187. doi: 10.1073/pnas.84.20.7183. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Moritz C. Parthenogenesis in the Endemic Australian Lizard Heteronotia binoei (Gekkonidae). Science. 1983 May 13;220(4598):735–737. doi: 10.1126/science.220.4598.735. [DOI] [PubMed] [Google Scholar]
- Poulton J., Deadman M. E., Gardiner R. M. Tandem direct duplications of mitochondrial DNA in mitochondrial myopathy: analysis of nucleotide sequence and tissue distribution. Nucleic Acids Res. 1989 Dec 25;17(24):10223–10229. doi: 10.1093/nar/17.24.10223. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rand D. M., Harrison R. G. Mitochondrial DNA transmission genetics in crickets. Genetics. 1986 Nov;114(3):955–970. doi: 10.1093/genetics/114.3.955. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reed K. C., Mann D. A. Rapid transfer of DNA from agarose gels to nylon membranes. Nucleic Acids Res. 1985 Oct 25;13(20):7207–7221. doi: 10.1093/nar/13.20.7207. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roels H., Sarhan M. J., Hanotiau I., de Fays M., Genet P., Bernard A., Buchet J. P., Lauwerys R. Preclinical toxic effects of manganese in workers from a Mn salts and oxides producing plant. Sci Total Environ. 1985 Mar 15;42(1-2):201–206. doi: 10.1016/0048-9697(85)90022-1. [DOI] [PubMed] [Google Scholar]
- Sederoff R. R. Structural variation in mitochondrial DNA. Adv Genet. 1984;22:1–108. doi: 10.1016/s0065-2660(08)60038-3. [DOI] [PubMed] [Google Scholar]
- Solignac M., Génermont J., Monnerot M., Mounolou J. C. Drosophila Mitochondrial Genetics: Evolution of Heteroplasmy through Germ Line Cell Divisions. Genetics. 1987 Dec;117(4):687–696. doi: 10.1093/genetics/117.4.687. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wallace D. C. Mitochondrial DNA mutations and neuromuscular disease. Trends Genet. 1989 Jan;5(1):9–13. doi: 10.1016/0168-9525(89)90005-x. [DOI] [PubMed] [Google Scholar]
- Wallace D. C. Structure and evolution of organelle genomes. Microbiol Rev. 1982 Jun;46(2):208–240. doi: 10.1128/mr.46.2.208-240.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wallis G. P. Mitochondrial DNA insertion polymorphism and germ line heteroplasmy in the Triturus cristatus complex. Heredity (Edinb) 1987 Apr;58(Pt 2):229–238. doi: 10.1038/hdy.1987.37. [DOI] [PubMed] [Google Scholar]