Abstract
The crystal structure of the title compound, C11H13ClF3N3O4S3 (systematic name: 6-chloro-2-methyl-3-{[(2,2,2-trifluoroethyl)sulfanyl]methyl}-3,4-dihydro-2H-1,2,4-benzothiadiazine-7-sulfonamide 1,1-dioxide; CRN: 346–18–9), exhibits a two-dimensional network of hydrogen-bonded molecules parallel to (
01). The NH and NH2 groups act as donor sites and the sulfonyl O atoms as acceptor sites in N—H⋯O hydrogen bonds, and a C—H⋯O interaction also occurs. The thiadiazine ring adopts an envelope conformation with the N atom bonded to sulfur at the tip of the flap, and the methyl substituent is in an axial position.
Related literature
For the preparation of polythiazide, see: McManus (1961 ▶). For a comprehensive description of polythiazide, see: Negendra Vara et al. (1991 ▶). For a preliminary crystallographic study at room temperature, see Dupont & Dideberg (1970 ▶). For crystal structures of polymorphs and solvates of related thiazide compounds, see: Zhou et al. (2006 ▶); Johnston et al. (2007a
▶,b
▶); Johnston et al. (2007 ▶); Fernandes, Florence et al. (2006 ▶); Fernandes, Shankland et al. (2007 ▶); Johnston et al. (2008 ▶); Fabbiani et al. (2007 ▶); Fernandes, Johnston et al. (2007 ▶); Fernandes, Leech et al. (2007 ▶).
Experimental
Crystal data
C11H13ClF3N3O4S3
M r = 439.87
Monoclinic,
a = 14.6659 (7) Å
b = 9.5498 (6) Å
c = 13.6720 (7) Å
β = 116.149 (3)°
V = 1718.87 (16) Å3
Z = 4
Mo Kα radiation
μ = 0.64 mm−1
T = 120 K
0.12 × 0.10 × 0.06 mm
Data collection
Bruker-Nonius Roper CCD camera on κ-goniostat diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.927, T max = 0.963
9021 measured reflections
3197 independent reflections
2768 reflections with I > 2σ(I)
R int = 0.055
Refinement
R[F 2 > 2σ(F 2)] = 0.042
wR(F 2) = 0.098
S = 1.06
3197 reflections
239 parameters
5 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.32 e Å−3
Δρmin = −0.41 e Å−3
Absolute structure: Flack (1983 ▶), 1504 Friedel pairs
Flack parameter: 0.12 (8)
Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810022105/kj2150sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022105/kj2150Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H1N⋯O4i | 0.88 (2) | 2.21 (4) | 2.906 (4) | 135 (4) |
| N2—H1N⋯O1ii | 0.88 (2) | 2.59 (4) | 3.230 (4) | 130 (4) |
| N3—H3N⋯O2iii | 0.88 (2) | 2.11 (3) | 2.929 (5) | 154 (5) |
| C10—H10B⋯O2iv | 0.99 | 2.31 | 3.267 (5) | 163 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
supplementary crystallographic information
Comment
The title compound is a thiazide diuretic drug. The asymmetric unit contains a single molecule (see Fig. 1), and the lattice parameters are consistent with a preliminary crystallographic study (Dupont & Dideberg, 1970). The geometrical parameters of the thiazide unit are in concert with other structures of the same class of compounds (see section Related literature). The S2—N3 bond of the sulfonyl group is gauche with respect to the C5—C6 bond of the phenyl ring. The conformation of C—S—C—C side chain of the heterocyclic ring is characterized by the torsions angles N1—C1—C9—S3 = 170.8 (3)°, C1—C9 —S3—C10 = 162.6 (3)° and C9—S3—C10—C11 = 94.5 (4)°.
Each polythiazide molecule is N—H···O bonded to two neighbouring molecules so that a hydrogen bonded sheet parallel to (-101) is formed (see Fig. 2). The NH group and one sulfonamide O atom are engaged in an N2—H···O4(x + 1/2, -y + 1/2) interaction. An N3—H···O2(x, y - 1, z) bond links two molecules via the sulfonamide NH2 group and a thiazide sulfonyl O atom. Each N—H···O bonded sheet contains an additional short C10—H···O2(x + 1/2, -y + 3/2, z + 1/2) contact (see Table 1). A longer N2—H···O1(x, -y + 1, z + 1/2) contact between neighbouring sheets, in which the NH group is involved again, is also worth mentioning. The closest intermolecular contact of the second NH2 H atom is to the S atom of the side chain, H2N···S3(x, -y + 1, z - 1/2) = 2.93 (4) Å.
Experimental
The investigated crystals were obtained from a polythiazide sample from Pfizer (Brussels, Belgium).
Refinement
All H atoms were identified in a difference map. Methyl H atoms were idealized and included as rigid groups allowed to rotate but not tip (C—H = 0.98 Å) and refined with 1.5 Ueq(C). H atoms bonded to primary (C—H = 1.00 Å), secondary CH2 (C—H = 0.99 Å) and aromatic carbon atoms (C—H = 0.95 Å) were positioned geometrically and refined with Uiso = 1.2 Ueq(C). Hydrogen atoms attached to N were refined with restrained distances [N—H = 0.88 (2) Å]; and their Uiso parameters were refined freely.
Figures
Fig. 1.
The molecular structure with displacement ellipsoids drawn at the 50% probability level. Hydrogen atoms are shown as spheres of arbitrary size.
Fig. 2.
Portion of a hydrogen bonded sheet parallel to (-101) and defined by N—H···O (dashed lines) and additional C—H···O (dotted lines) contacts. H and O atoms directly involved in these interactions are drawn as balls, and hydrogen attached to C atoms are omitted for clarity.
Crystal data
| C11H13ClF3N3O4S3 | F(000) = 896 |
| Mr = 439.87 | Dx = 1.700 Mg m−3 |
| Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: C -2yc | Cell parameters from 11202 reflections |
| a = 14.6659 (7) Å | θ = 2.9–27.5° |
| b = 9.5498 (6) Å | µ = 0.64 mm−1 |
| c = 13.6720 (7) Å | T = 120 K |
| β = 116.149 (3)° | Plate, colourless |
| V = 1718.87 (16) Å3 | 0.12 × 0.10 × 0.06 mm |
| Z = 4 |
Data collection
| Bruker-Nonius Roper CCD camera on κ-goniostat diffractometer | 3197 independent reflections |
| Radiation source: Bruker–Nonius FR591 rotating anode | 2768 reflections with I > 2σ(I) |
| graphite | Rint = 0.055 |
| Detector resolution: 9.091 pixels mm-1 | θmax = 26.0°, θmin = 3.3° |
| φ & ω scans | h = −17→18 |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −11→11 |
| Tmin = 0.927, Tmax = 0.963 | l = −15→16 |
| 9021 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.098 | w = 1/[σ2(Fo2) + (0.0435P)2 + 0.009P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.06 | (Δ/σ)max < 0.001 |
| 3197 reflections | Δρmax = 0.32 e Å−3 |
| 239 parameters | Δρmin = −0.41 e Å−3 |
| 5 restraints | Absolute structure: Flack (1983), 1504 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.12 (8) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.88627 (8) | 0.03391 (10) | 0.90846 (8) | 0.0280 (2) | |
| S1 | 0.94030 (7) | 0.63949 (10) | 0.76867 (7) | 0.0226 (2) | |
| S2 | 0.77245 (7) | 0.12532 (10) | 0.65142 (8) | 0.0241 (2) | |
| S3 | 1.04262 (8) | 0.75479 (12) | 1.17195 (8) | 0.0262 (2) | |
| O1 | 0.9673 (2) | 0.6291 (3) | 0.6804 (2) | 0.0285 (7) | |
| O2 | 0.8556 (2) | 0.7293 (3) | 0.7536 (2) | 0.0272 (7) | |
| O3 | 0.7388 (2) | 0.2033 (3) | 0.5523 (2) | 0.0348 (7) | |
| O4 | 0.6988 (2) | 0.0628 (3) | 0.6808 (2) | 0.0344 (7) | |
| N1 | 1.0394 (2) | 0.6927 (4) | 0.8780 (3) | 0.0228 (7) | |
| N2 | 1.0131 (3) | 0.5322 (3) | 0.9992 (3) | 0.0214 (7) | |
| H1N | 1.043 (4) | 0.502 (6) | 1.067 (2) | 0.052 (16)* | |
| N3 | 0.8417 (3) | −0.0017 (4) | 0.6449 (3) | 0.0255 (8) | |
| H2N | 0.892 (3) | 0.022 (5) | 0.631 (4) | 0.050 (16)* | |
| H3N | 0.856 (4) | −0.066 (4) | 0.696 (3) | 0.041 (15)* | |
| C1 | 1.0167 (3) | 0.6786 (4) | 0.9736 (3) | 0.0233 (9) | |
| H1 | 0.9479 | 0.7195 | 0.9531 | 0.028* | |
| C2 | 0.9619 (3) | 0.4380 (4) | 0.9200 (3) | 0.0192 (8) | |
| C3 | 0.9196 (3) | 0.4722 (4) | 0.8079 (3) | 0.0193 (8) | |
| C4 | 0.8626 (3) | 0.3757 (4) | 0.7286 (3) | 0.0188 (8) | |
| H4 | 0.8328 | 0.4027 | 0.6541 | 0.023* | |
| C5 | 0.8483 (3) | 0.2403 (4) | 0.7563 (3) | 0.0199 (8) | |
| C6 | 0.8960 (3) | 0.2032 (4) | 0.8677 (3) | 0.0192 (8) | |
| C7 | 0.9523 (3) | 0.2976 (4) | 0.9475 (3) | 0.0206 (8) | |
| H7 | 0.9849 | 0.2686 | 1.0215 | 0.025* | |
| C8 | 1.1391 (3) | 0.6397 (5) | 0.8917 (3) | 0.0289 (10) | |
| H8A | 1.1933 | 0.6981 | 0.9447 | 0.043* | |
| H8B | 1.1421 | 0.6430 | 0.8216 | 0.043* | |
| H8C | 1.1480 | 0.5428 | 0.9180 | 0.043* | |
| C9 | 1.0919 (3) | 0.7580 (4) | 1.0712 (3) | 0.0251 (9) | |
| H9A | 1.0985 | 0.8557 | 1.0509 | 0.030* | |
| H9B | 1.1595 | 0.7129 | 1.1004 | 0.030* | |
| C10 | 1.1529 (3) | 0.8004 (6) | 1.2942 (3) | 0.0360 (11) | |
| H10A | 1.1519 | 0.7472 | 1.3558 | 0.043* | |
| H10B | 1.2143 | 0.7715 | 1.2865 | 0.043* | |
| C11 | 1.1605 (4) | 0.9502 (6) | 1.3201 (4) | 0.0438 (13) | |
| F1 | 1.2461 (3) | 0.9823 (5) | 1.4089 (3) | 0.0842 (14) | |
| F2 | 1.1618 (3) | 1.0300 (4) | 1.2398 (3) | 0.0708 (10) | |
| F3 | 1.0838 (2) | 0.9967 (4) | 1.3395 (3) | 0.0656 (10) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0427 (6) | 0.0181 (5) | 0.0234 (5) | −0.0054 (4) | 0.0147 (4) | −0.0008 (4) |
| S1 | 0.0297 (5) | 0.0179 (5) | 0.0215 (5) | 0.0026 (4) | 0.0125 (4) | 0.0038 (4) |
| S2 | 0.0276 (5) | 0.0226 (6) | 0.0185 (5) | −0.0012 (5) | 0.0069 (4) | −0.0028 (4) |
| S3 | 0.0322 (5) | 0.0254 (6) | 0.0257 (5) | −0.0050 (4) | 0.0172 (4) | −0.0072 (4) |
| O1 | 0.0404 (17) | 0.0296 (17) | 0.0201 (15) | −0.0011 (13) | 0.0175 (13) | 0.0038 (12) |
| O2 | 0.0278 (15) | 0.0215 (16) | 0.0331 (17) | 0.0057 (13) | 0.0141 (13) | 0.0059 (13) |
| O3 | 0.0458 (18) | 0.0267 (17) | 0.0168 (15) | 0.0028 (14) | 0.0000 (12) | −0.0001 (12) |
| O4 | 0.0300 (16) | 0.0406 (19) | 0.0346 (18) | −0.0126 (15) | 0.0161 (14) | −0.0130 (15) |
| N1 | 0.0321 (19) | 0.0193 (18) | 0.0214 (18) | −0.0022 (15) | 0.0157 (15) | −0.0036 (14) |
| N2 | 0.0327 (18) | 0.0143 (17) | 0.0176 (18) | −0.0026 (14) | 0.0116 (15) | 0.0015 (13) |
| N3 | 0.034 (2) | 0.020 (2) | 0.025 (2) | 0.0027 (16) | 0.0156 (16) | −0.0014 (15) |
| C1 | 0.036 (2) | 0.017 (2) | 0.021 (2) | −0.0040 (18) | 0.0165 (17) | −0.0021 (16) |
| C2 | 0.0214 (19) | 0.019 (2) | 0.017 (2) | 0.0023 (16) | 0.0083 (16) | −0.0020 (16) |
| C3 | 0.024 (2) | 0.016 (2) | 0.019 (2) | 0.0041 (16) | 0.0111 (16) | 0.0020 (16) |
| C4 | 0.0179 (18) | 0.019 (2) | 0.017 (2) | 0.0053 (16) | 0.0061 (15) | 0.0013 (16) |
| C5 | 0.022 (2) | 0.019 (2) | 0.019 (2) | −0.0006 (17) | 0.0092 (17) | −0.0054 (16) |
| C6 | 0.0242 (19) | 0.017 (2) | 0.018 (2) | 0.0004 (16) | 0.0109 (16) | 0.0005 (16) |
| C7 | 0.028 (2) | 0.019 (2) | 0.0131 (19) | −0.0031 (17) | 0.0075 (15) | 0.0003 (15) |
| C8 | 0.021 (2) | 0.041 (3) | 0.025 (2) | 0.0011 (19) | 0.0104 (17) | 0.0052 (19) |
| C9 | 0.032 (2) | 0.023 (2) | 0.021 (2) | 0.0007 (18) | 0.0118 (17) | −0.0009 (17) |
| C10 | 0.033 (2) | 0.054 (3) | 0.020 (2) | 0.004 (2) | 0.0101 (18) | −0.002 (2) |
| C11 | 0.040 (3) | 0.054 (4) | 0.044 (3) | −0.020 (2) | 0.024 (2) | −0.021 (3) |
| F1 | 0.066 (2) | 0.128 (4) | 0.062 (2) | −0.063 (2) | 0.0310 (18) | −0.056 (2) |
| F2 | 0.095 (2) | 0.052 (2) | 0.072 (2) | −0.0414 (19) | 0.043 (2) | −0.0140 (18) |
| F3 | 0.069 (2) | 0.052 (2) | 0.095 (3) | −0.0182 (17) | 0.053 (2) | −0.0440 (19) |
Geometric parameters (Å, °)
| Cl1—C6 | 1.736 (4) | C2—C3 | 1.415 (5) |
| S1—O1 | 1.429 (3) | C2—C7 | 1.416 (6) |
| S1—O2 | 1.448 (3) | C3—C4 | 1.388 (5) |
| S1—N1 | 1.640 (3) | C4—C5 | 1.390 (5) |
| S1—C3 | 1.753 (4) | C4—H4 | 0.9500 |
| S2—O3 | 1.430 (3) | C5—C6 | 1.412 (5) |
| S2—O4 | 1.437 (3) | C6—C7 | 1.375 (5) |
| S2—N3 | 1.610 (4) | C7—H7 | 0.9500 |
| S2—C5 | 1.759 (4) | C8—H8A | 0.9800 |
| S3—C10 | 1.794 (4) | C8—H8B | 0.9800 |
| S3—C9 | 1.816 (4) | C8—H8C | 0.9800 |
| N1—C8 | 1.480 (5) | C9—H9A | 0.9900 |
| N1—C1 | 1.490 (5) | C9—H9B | 0.9900 |
| N2—C2 | 1.353 (5) | C10—C11 | 1.467 (7) |
| N2—C1 | 1.447 (5) | C10—H10A | 0.9900 |
| N2—H1N | 0.88 (2) | C10—H10B | 0.9900 |
| N3—H2N | 0.87 (2) | C11—F3 | 1.340 (6) |
| N3—H3N | 0.884 (19) | C11—F2 | 1.343 (6) |
| C1—C9 | 1.508 (5) | C11—F1 | 1.343 (6) |
| C1—H1 | 1.0000 | ||
| O1—S1—O2 | 117.39 (17) | C3—C4—H4 | 119.5 |
| O1—S1—N1 | 109.12 (17) | C5—C4—H4 | 119.5 |
| O2—S1—N1 | 107.83 (17) | C4—C5—C6 | 117.7 (3) |
| O1—S1—C3 | 110.15 (18) | C4—C5—S2 | 118.4 (3) |
| O2—S1—C3 | 109.29 (18) | C6—C5—S2 | 123.9 (3) |
| N1—S1—C3 | 101.91 (18) | C7—C6—C5 | 122.0 (4) |
| O3—S2—O4 | 119.56 (19) | C7—C6—Cl1 | 117.5 (3) |
| O3—S2—N3 | 107.61 (19) | C5—C6—Cl1 | 120.5 (3) |
| O4—S2—N3 | 105.8 (2) | C6—C7—C2 | 120.3 (3) |
| O3—S2—C5 | 106.11 (18) | C6—C7—H7 | 119.8 |
| O4—S2—C5 | 108.34 (18) | C2—C7—H7 | 119.8 |
| N3—S2—C5 | 109.11 (19) | N1—C8—H8A | 109.5 |
| C10—S3—C9 | 101.8 (2) | N1—C8—H8B | 109.5 |
| C8—N1—C1 | 116.6 (3) | H8A—C8—H8B | 109.5 |
| C8—N1—S1 | 116.0 (3) | N1—C8—H8C | 109.5 |
| C1—N1—S1 | 108.8 (2) | H8A—C8—H8C | 109.5 |
| C2—N2—C1 | 121.0 (3) | H8B—C8—H8C | 109.5 |
| C2—N2—H1N | 118 (4) | C1—C9—S3 | 106.4 (3) |
| C1—N2—H1N | 121 (4) | C1—C9—H9A | 110.5 |
| S2—N3—H2N | 116 (4) | S3—C9—H9A | 110.5 |
| S2—N3—H3N | 115 (3) | C1—C9—H9B | 110.5 |
| H2N—N3—H3N | 115 (5) | S3—C9—H9B | 110.5 |
| N2—C1—N1 | 110.2 (3) | H9A—C9—H9B | 108.6 |
| N2—C1—C9 | 111.2 (3) | C11—C10—S3 | 113.7 (4) |
| N1—C1—C9 | 111.8 (3) | C11—C10—H10A | 108.8 |
| N2—C1—H1 | 107.8 | S3—C10—H10A | 108.8 |
| N1—C1—H1 | 107.8 | C11—C10—H10B | 108.8 |
| C9—C1—H1 | 107.8 | S3—C10—H10B | 108.8 |
| N2—C2—C3 | 122.5 (4) | H10A—C10—H10B | 107.7 |
| N2—C2—C7 | 120.1 (3) | F3—C11—F2 | 106.8 (5) |
| C3—C2—C7 | 117.3 (3) | F3—C11—F1 | 106.1 (4) |
| C4—C3—C2 | 121.2 (4) | F2—C11—F1 | 105.4 (4) |
| C4—C3—S1 | 119.5 (3) | F3—C11—C10 | 113.0 (4) |
| C2—C3—S1 | 119.3 (3) | F2—C11—C10 | 112.5 (4) |
| C3—C4—C5 | 121.1 (3) | F1—C11—C10 | 112.5 (5) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H1N···O4i | 0.88 (2) | 2.21 (4) | 2.906 (4) | 135 (4) |
| N2—H1N···O1ii | 0.88 (2) | 2.59 (4) | 3.230 (4) | 130 (4) |
| N3—H3N···O2iii | 0.88 (2) | 2.11 (3) | 2.929 (5) | 154 (5) |
| C10—H10B···O2iv | 0.99 | 2.31 | 3.267 (5) | 163 |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x, −y+1, z+1/2; (iii) x, y−1, z; (iv) x+1/2, −y+3/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KJ2150).
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810022105/kj2150sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022105/kj2150Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


