Abstract
In the non-planar title compound, C16H14N2O2, the dihedral angle between the phenyl rings is 16.67 (8)°. An E conformation is found for each of the imine [1.286 (2) Å] and ethylene [1.335 (2) Å] bonds. The amide O and H atoms are anti, and an intramolecular hydroxy O—H⋯N hydrogen bond is noted. The formation of N—H⋯O(hydroxy) hydrogen bonds in the crystal packing leads to helical chains along the b axis. Supramolecular layers in the ab plane are formed as the chains are linked by C—H⋯O interactions.
Related literature
For background to the biological activity of compounds with the N-acylhydrazone framework, (E)-cinnamoylhydrazone derivatives, and related structures, see: Carvalho et al. (2012a
▶). For the synthesis, see: Carvalho et al. (2012b
▶). For background to the data collection at the National Crystallographic Service, see: Coles & Gale (2012 ▶).
Experimental
Crystal data
C16H14N2O2
M r = 266.29
Orthorhombic,
a = 24.2707 (17) Å
b = 5.1322 (2) Å
c = 10.5192 (4) Å
V = 1310.29 (12) Å3
Z = 4
Mo Kα radiation
μ = 0.09 mm−1
T = 100 K
0.19 × 0.09 × 0.03 mm
Data collection
Rigaku Saturn724+ diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku, 2011 ▶) T min = 0.878, T max = 1.000
5871 measured reflections
1575 independent reflections
1504 reflections with I > 2σ(I)
R int = 0.022
Refinement
R[F 2 > 2σ(F 2)] = 0.028
wR(F 2) = 0.075
S = 0.93
1575 reflections
181 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.20 e Å−3
Δρmin = −0.15 e Å−3
Data collection: CrystalClear (Rigaku, 2011 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028516/hb6860sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028516/hb6860Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812028516/hb6860Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1o⋯N1 | 0.85 (2) | 1.86 (2) | 2.6080 (19) | 147 (2) |
| N2—H2n⋯O1i | 0.88 (1) | 2.05 (1) | 2.9070 (19) | 165 (2) |
| C3—H3⋯O2ii | 0.95 | 2.54 | 3.215 (2) | 128 |
| C7—H7⋯O2ii | 0.95 | 2.47 | 3.174 (2) | 131 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged. JLW acknowledges support from CAPES (Brazil). Structural studies are supported by the Ministry of Higher Education (Malaysia) through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/3).
supplementary crystallographic information
Comment
Compounds related to the title (E)-cinnamoylhydrazone derivative, (I), are of interest owing to their biological activities (Carvalho et al., 2012a). For example, (I), exhibits considerable trypanocidal activity (Carvalho et al., 2012b). Herein, the crystal structure determination of (I) is described.
In (I), Fig. 1, there is a twist in the molecule as seen in the dihedral angle between the phenyl rings of 16.67 (8)°. The greatest deviation from a planar torsion angle is found for C9—C10—C11—C16 of 8.4 (3)°. There is an intramolecular hydroxy-O1···N2 hydrogen bond. The conformation about each of the imine [N1═C7 = 1.286 (2) Å] and ethylene [C9═C10 = 1.335 (2) Å] bonds is E. The amide-O and –H atoms are anti. The molecular structure of (I) resembles that of the unsubstituted compound (Carvalho et al., 2012a) where the dihedral angle between terminal phenyl rings is 25.48 (12)°.
The formation of N—H···O hydrogen bonds between the amide-H and hydroxyl-O leads to helical supramolecular chains along the b axis, Fig. 2 and Table 1. The chains are linked into a supramolecular layer in the ab plane by C—H···O interactions, Fig. 3 and Table 1; the layers inter-digitate along the c axis, Fig. 4.
Experimental
The title compound was prepared as reported (Carvalho et al., 2012b). The sample used in the crystallographic study was grown from its EtOH solution and intensity data was collected at the National Crystallographic Service, England (Coles & Gale, 2012).
Refinement
The C-bound H atoms were geometrically placed (C—H = 0.95 Å) and refined as riding with Uiso(H) = 1.2Ueq(C). The O– and N-bound H atoms were located from a difference map and refined with the distance restraint O—H = 0.84±0.01 and N—H = 0.88±0.01 Å, and with Uiso(H) = zUeq(carrier atom); z = 1.5 for O and z = 1.2 for N. In the absence of significant anomalous scattering effects, 1033 Friedel pairs were averaged in the final refinement. One reflection, i.e. (20 0 0) was omitted from the final refinement owing to poor agreement.
Figures
Fig. 1.
The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level.
Fig. 2.
A view of the supramolecular helical chain along the b axis in (I). The N—H···O hydrogen bonds are shown as blue dashed lines.
Fig. 3.
A view of the supramolecular layer in the ab plane in (I) sustained by N—H···O and interactions, shown as blue and orange dashed lines, respectively.
Fig. 4.
A view in projection down the b axis of the unit-cell contents for (I) showing the inter-digitation of layers. The N—H···O and C—H···O interactions are shown as blue and orange dashed lines, respectively.
Crystal data
| C16H14N2O2 | F(000) = 560 |
| Mr = 266.29 | Dx = 1.350 Mg m−3 |
| Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2c -2n | Cell parameters from 5659 reflections |
| a = 24.2707 (17) Å | θ = 3.4–27.5° |
| b = 5.1322 (2) Å | µ = 0.09 mm−1 |
| c = 10.5192 (4) Å | T = 100 K |
| V = 1310.29 (12) Å3 | Plate, colourless |
| Z = 4 | 0.19 × 0.09 × 0.03 mm |
Data collection
| Rigaku Saturn724+ diffractometer | 1575 independent reflections |
| Radiation source: Rotating Anode | 1504 reflections with I > 2σ(I) |
| Confocal monochromator | Rint = 0.022 |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 27.5°, θmin = 3.4° |
| profile data from ω–scans | h = −30→31 |
| Absorption correction: multi-scan (CrystalClear; Rigaku, 2011) | k = −6→6 |
| Tmin = 0.878, Tmax = 1.000 | l = −13→13 |
| 5871 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.028 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.075 | w = 1/[σ2(Fo2) + (0.0497P)2 + 0.3579P] where P = (Fo2 + 2Fc2)/3 |
| S = 0.93 | (Δ/σ)max = 0.001 |
| 1575 reflections | Δρmax = 0.20 e Å−3 |
| 181 parameters | Δρmin = −0.15 e Å−3 |
| 1 restraint | Absolute structure: nd |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.69975 (5) | 0.5777 (2) | −0.10431 (12) | 0.0192 (3) | |
| H1O | 0.7247 (7) | 0.671 (4) | −0.071 (2) | 0.029* | |
| O2 | 0.81273 (5) | 1.1490 (3) | −0.06463 (13) | 0.0232 (3) | |
| N1 | 0.75962 (6) | 0.7782 (3) | 0.07685 (14) | 0.0150 (3) | |
| N2 | 0.79692 (6) | 0.9517 (3) | 0.12637 (14) | 0.0158 (3) | |
| H2N | 0.7997 (9) | 0.959 (4) | 0.2096 (10) | 0.019* | |
| C1 | 0.67996 (7) | 0.4128 (3) | −0.01381 (17) | 0.0157 (3) | |
| C2 | 0.69722 (7) | 0.4288 (3) | 0.11420 (17) | 0.0140 (3) | |
| C3 | 0.67560 (7) | 0.2498 (3) | 0.20137 (17) | 0.0171 (4) | |
| H3 | 0.6869 | 0.2577 | 0.2877 | 0.021* | |
| C4 | 0.63806 (7) | 0.0613 (3) | 0.16428 (19) | 0.0187 (4) | |
| H4 | 0.6241 | −0.0602 | 0.2244 | 0.022* | |
| C5 | 0.62097 (7) | 0.0517 (3) | 0.03833 (19) | 0.0201 (4) | |
| H5 | 0.5947 | −0.0753 | 0.0128 | 0.024* | |
| C6 | 0.64170 (7) | 0.2249 (3) | −0.05053 (18) | 0.0197 (4) | |
| H6 | 0.6298 | 0.2157 | −0.1365 | 0.024* | |
| C7 | 0.73698 (7) | 0.6215 (3) | 0.15666 (17) | 0.0150 (3) | |
| H7 | 0.7463 | 0.6319 | 0.2442 | 0.018* | |
| C8 | 0.82227 (7) | 1.1293 (3) | 0.04921 (17) | 0.0156 (3) | |
| C9 | 0.86435 (7) | 1.2853 (3) | 0.11785 (17) | 0.0161 (3) | |
| H9 | 0.8711 | 1.2542 | 0.2055 | 0.019* | |
| C10 | 0.89272 (7) | 1.4693 (3) | 0.05648 (17) | 0.0170 (3) | |
| H10 | 0.8815 | 1.5065 | −0.0281 | 0.020* | |
| C11 | 0.93932 (7) | 1.6197 (3) | 0.10555 (17) | 0.0159 (3) | |
| C12 | 0.96062 (7) | 1.8241 (3) | 0.03252 (19) | 0.0203 (4) | |
| H12 | 0.9442 | 1.8652 | −0.0469 | 0.024* | |
| C13 | 1.00558 (8) | 1.9677 (4) | 0.0748 (2) | 0.0226 (4) | |
| H13 | 1.0196 | 2.1061 | 0.0242 | 0.027* | |
| C14 | 1.03004 (7) | 1.9097 (4) | 0.19034 (19) | 0.0225 (4) | |
| H14 | 1.0606 | 2.0087 | 0.2193 | 0.027* | |
| C15 | 1.00967 (7) | 1.7064 (4) | 0.26359 (18) | 0.0210 (4) | |
| H15 | 1.0266 | 1.6658 | 0.3426 | 0.025* | |
| C16 | 0.96482 (7) | 1.5624 (3) | 0.22228 (18) | 0.0177 (3) | |
| H16 | 0.9512 | 1.4238 | 0.2732 | 0.021* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0245 (6) | 0.0213 (6) | 0.0118 (6) | −0.0067 (5) | −0.0012 (5) | −0.0003 (5) |
| O2 | 0.0293 (7) | 0.0274 (7) | 0.0130 (6) | −0.0075 (5) | −0.0028 (6) | −0.0001 (6) |
| N1 | 0.0147 (6) | 0.0154 (6) | 0.0149 (6) | −0.0003 (5) | −0.0009 (5) | −0.0031 (6) |
| N2 | 0.0175 (7) | 0.0183 (7) | 0.0115 (7) | −0.0035 (5) | −0.0015 (6) | −0.0028 (6) |
| C1 | 0.0148 (7) | 0.0167 (7) | 0.0154 (8) | 0.0021 (6) | 0.0008 (6) | −0.0019 (7) |
| C2 | 0.0136 (7) | 0.0144 (7) | 0.0141 (8) | 0.0011 (6) | 0.0011 (6) | −0.0023 (7) |
| C3 | 0.0170 (8) | 0.0190 (8) | 0.0154 (9) | 0.0017 (6) | 0.0011 (7) | −0.0009 (7) |
| C4 | 0.0189 (8) | 0.0156 (8) | 0.0215 (9) | −0.0003 (6) | 0.0054 (7) | 0.0021 (7) |
| C5 | 0.0175 (8) | 0.0179 (8) | 0.0248 (9) | −0.0029 (6) | 0.0001 (7) | −0.0049 (7) |
| C6 | 0.0189 (8) | 0.0225 (8) | 0.0177 (8) | −0.0014 (7) | −0.0032 (7) | −0.0041 (8) |
| C7 | 0.0150 (7) | 0.0182 (8) | 0.0118 (7) | 0.0005 (6) | −0.0007 (6) | −0.0029 (7) |
| C8 | 0.0159 (7) | 0.0166 (8) | 0.0143 (8) | 0.0010 (6) | 0.0009 (6) | −0.0013 (7) |
| C9 | 0.0167 (7) | 0.0174 (8) | 0.0141 (7) | 0.0008 (6) | −0.0010 (6) | −0.0024 (7) |
| C10 | 0.0175 (8) | 0.0176 (8) | 0.0158 (8) | 0.0015 (6) | −0.0009 (7) | −0.0018 (7) |
| C11 | 0.0148 (7) | 0.0148 (7) | 0.0180 (8) | 0.0017 (6) | 0.0028 (7) | −0.0019 (7) |
| C12 | 0.0212 (8) | 0.0180 (8) | 0.0217 (9) | 0.0004 (6) | 0.0004 (7) | 0.0039 (7) |
| C13 | 0.0207 (9) | 0.0160 (8) | 0.0312 (10) | −0.0016 (6) | 0.0038 (8) | 0.0015 (8) |
| C14 | 0.0175 (8) | 0.0189 (8) | 0.0311 (11) | −0.0004 (7) | 0.0009 (7) | −0.0060 (8) |
| C15 | 0.0178 (8) | 0.0230 (9) | 0.0223 (9) | 0.0025 (7) | −0.0015 (7) | −0.0046 (8) |
| C16 | 0.0173 (7) | 0.0174 (8) | 0.0182 (8) | 0.0010 (6) | 0.0030 (7) | −0.0001 (7) |
Geometric parameters (Å, º)
| O1—C1 | 1.361 (2) | C7—H7 | 0.9500 |
| O1—H1O | 0.848 (10) | C8—C9 | 1.485 (2) |
| O2—C8 | 1.224 (2) | C9—C10 | 1.335 (2) |
| N1—C7 | 1.286 (2) | C9—H9 | 0.9500 |
| N1—N2 | 1.3727 (19) | C10—C11 | 1.463 (2) |
| N2—C8 | 1.367 (2) | C10—H10 | 0.9500 |
| N2—H2N | 0.879 (10) | C11—C12 | 1.399 (2) |
| C1—C6 | 1.393 (2) | C11—C16 | 1.406 (2) |
| C1—C2 | 1.413 (3) | C12—C13 | 1.390 (3) |
| C2—C3 | 1.400 (2) | C12—H12 | 0.9500 |
| C2—C7 | 1.452 (2) | C13—C14 | 1.385 (3) |
| C3—C4 | 1.385 (2) | C13—H13 | 0.9500 |
| C3—H3 | 0.9500 | C14—C15 | 1.388 (3) |
| C4—C5 | 1.389 (3) | C14—H14 | 0.9500 |
| C4—H4 | 0.9500 | C15—C16 | 1.386 (2) |
| C5—C6 | 1.385 (3) | C15—H15 | 0.9500 |
| C5—H5 | 0.9500 | C16—H16 | 0.9500 |
| C6—H6 | 0.9500 | ||
| C1—O1—H1O | 108.1 (18) | O2—C8—C9 | 124.15 (16) |
| C7—N1—N2 | 116.09 (15) | N2—C8—C9 | 112.36 (15) |
| C8—N2—N1 | 120.28 (15) | C10—C9—C8 | 120.06 (16) |
| C8—N2—H2N | 122.0 (15) | C10—C9—H9 | 120.0 |
| N1—N2—H2N | 117.1 (15) | C8—C9—H9 | 120.0 |
| O1—C1—C6 | 118.13 (17) | C9—C10—C11 | 126.95 (16) |
| O1—C1—C2 | 121.73 (15) | C9—C10—H10 | 116.5 |
| C6—C1—C2 | 120.14 (17) | C11—C10—H10 | 116.5 |
| C3—C2—C1 | 118.36 (15) | C12—C11—C16 | 118.26 (16) |
| C3—C2—C7 | 119.64 (16) | C12—C11—C10 | 119.17 (16) |
| C1—C2—C7 | 121.99 (16) | C16—C11—C10 | 122.55 (16) |
| C4—C3—C2 | 121.36 (17) | C13—C12—C11 | 120.80 (18) |
| C4—C3—H3 | 119.3 | C13—C12—H12 | 119.6 |
| C2—C3—H3 | 119.3 | C11—C12—H12 | 119.6 |
| C3—C4—C5 | 119.33 (17) | C14—C13—C12 | 120.23 (18) |
| C3—C4—H4 | 120.3 | C14—C13—H13 | 119.9 |
| C5—C4—H4 | 120.3 | C12—C13—H13 | 119.9 |
| C6—C5—C4 | 120.84 (17) | C13—C14—C15 | 119.73 (17) |
| C6—C5—H5 | 119.6 | C13—C14—H14 | 120.1 |
| C4—C5—H5 | 119.6 | C15—C14—H14 | 120.1 |
| C5—C6—C1 | 119.96 (17) | C16—C15—C14 | 120.44 (17) |
| C5—C6—H6 | 120.0 | C16—C15—H15 | 119.8 |
| C1—C6—H6 | 120.0 | C14—C15—H15 | 119.8 |
| N1—C7—C2 | 120.60 (16) | C15—C16—C11 | 120.54 (17) |
| N1—C7—H7 | 119.7 | C15—C16—H16 | 119.7 |
| C2—C7—H7 | 119.7 | C11—C16—H16 | 119.7 |
| O2—C8—N2 | 123.43 (16) | ||
| C7—N1—N2—C8 | −178.71 (15) | N1—N2—C8—O2 | 1.8 (3) |
| O1—C1—C2—C3 | −179.07 (15) | N1—N2—C8—C9 | −175.41 (14) |
| C6—C1—C2—C3 | 1.0 (2) | O2—C8—C9—C10 | 3.3 (3) |
| O1—C1—C2—C7 | 0.0 (2) | N2—C8—C9—C10 | −179.52 (15) |
| C6—C1—C2—C7 | −179.97 (16) | C8—C9—C10—C11 | −172.84 (16) |
| C1—C2—C3—C4 | −0.2 (2) | C9—C10—C11—C12 | −173.45 (17) |
| C7—C2—C3—C4 | −179.29 (15) | C9—C10—C11—C16 | 8.4 (3) |
| C2—C3—C4—C5 | −0.8 (3) | C16—C11—C12—C13 | −0.4 (3) |
| C3—C4—C5—C6 | 1.1 (3) | C10—C11—C12—C13 | −178.64 (16) |
| C4—C5—C6—C1 | −0.4 (3) | C11—C12—C13—C14 | 0.1 (3) |
| O1—C1—C6—C5 | 179.34 (15) | C12—C13—C14—C15 | 0.4 (3) |
| C2—C1—C6—C5 | −0.7 (3) | C13—C14—C15—C16 | −0.4 (3) |
| N2—N1—C7—C2 | −179.55 (14) | C14—C15—C16—C11 | 0.1 (3) |
| C3—C2—C7—N1 | 176.11 (15) | C12—C11—C16—C15 | 0.3 (2) |
| C1—C2—C7—N1 | −2.9 (2) | C10—C11—C16—C15 | 178.50 (16) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1o···N1 | 0.85 (2) | 1.86 (2) | 2.6080 (19) | 147 (2) |
| N2—H2n···O1i | 0.88 (1) | 2.05 (1) | 2.9070 (19) | 165 (2) |
| C3—H3···O2ii | 0.95 | 2.54 | 3.215 (2) | 128 |
| C7—H7···O2ii | 0.95 | 2.47 | 3.174 (2) | 131 |
Symmetry codes: (i) −x+3/2, y+1/2, z+1/2; (ii) −x+3/2, y−1/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6860).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028516/hb6860sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028516/hb6860Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812028516/hb6860Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report




