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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 30;68(Pt 7):o2253–o2254. doi: 10.1107/S1600536812028516

(2E)-N′-[(E)-2-Hy­droxy­benzyl­idene]-3-phenyl­prop-2-enohydrazide

Samir A Carvalho a,b, Edson F da Silva a, Carlos A M Fraga c,b, Solange M S V Wardell d, James L Wardell e,, Edward R T Tiekink f,*
PMCID: PMC3394040  PMID: 22798905

Abstract

In the non-planar title compound, C16H14N2O2, the dihedral angle between the phenyl rings is 16.67 (8)°. An E conformation is found for each of the imine [1.286 (2) Å] and ethyl­ene [1.335 (2) Å] bonds. The amide O and H atoms are anti, and an intra­molecular hy­droxy O—H⋯N hydrogen bond is noted. The formation of N—H⋯O(hy­droxy) hydrogen bonds in the crystal packing leads to helical chains along the b axis. Supra­molecular layers in the ab plane are formed as the chains are linked by C—H⋯O inter­actions.

Related literature  

For background to the biological activity of compounds with the N-acyl­hydrazone framework, (E)-cinnamoylhydrazone derivatives, and related structures, see: Carvalho et al. (2012a ). For the synthesis, see: Carvalho et al. (2012b ). For background to the data collection at the National Crystallographic Service, see: Coles & Gale (2012).graphic file with name e-68-o2253-scheme1.jpg

Experimental  

Crystal data  

  • C16H14N2O2

  • M r = 266.29

  • Orthorhombic, Inline graphic

  • a = 24.2707 (17) Å

  • b = 5.1322 (2) Å

  • c = 10.5192 (4) Å

  • V = 1310.29 (12) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 100 K

  • 0.19 × 0.09 × 0.03 mm

Data collection  

  • Rigaku Saturn724+ diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2011) T min = 0.878, T max = 1.000

  • 5871 measured reflections

  • 1575 independent reflections

  • 1504 reflections with I > 2σ(I)

  • R int = 0.022

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.028

  • wR(F 2) = 0.075

  • S = 0.93

  • 1575 reflections

  • 181 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.20 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: CrystalClear (Rigaku, 2011); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028516/hb6860sup1.cif

e-68-o2253-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028516/hb6860Isup2.hkl

e-68-o2253-Isup2.hkl (76.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812028516/hb6860Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1o⋯N1 0.85 (2) 1.86 (2) 2.6080 (19) 147 (2)
N2—H2n⋯O1i 0.88 (1) 2.05 (1) 2.9070 (19) 165 (2)
C3—H3⋯O2ii 0.95 2.54 3.215 (2) 128
C7—H7⋯O2ii 0.95 2.47 3.174 (2) 131

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged. JLW acknowledges support from CAPES (Brazil). Structural studies are supported by the Ministry of Higher Education (Malaysia) through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/3).

supplementary crystallographic information

Comment

Compounds related to the title (E)-cinnamoylhydrazone derivative, (I), are of interest owing to their biological activities (Carvalho et al., 2012a). For example, (I), exhibits considerable trypanocidal activity (Carvalho et al., 2012b). Herein, the crystal structure determination of (I) is described.

In (I), Fig. 1, there is a twist in the molecule as seen in the dihedral angle between the phenyl rings of 16.67 (8)°. The greatest deviation from a planar torsion angle is found for C9—C10—C11—C16 of 8.4 (3)°. There is an intramolecular hydroxy-O1···N2 hydrogen bond. The conformation about each of the imine [N1═C7 = 1.286 (2) Å] and ethylene [C9═C10 = 1.335 (2) Å] bonds is E. The amide-O and –H atoms are anti. The molecular structure of (I) resembles that of the unsubstituted compound (Carvalho et al., 2012a) where the dihedral angle between terminal phenyl rings is 25.48 (12)°.

The formation of N—H···O hydrogen bonds between the amide-H and hydroxyl-O leads to helical supramolecular chains along the b axis, Fig. 2 and Table 1. The chains are linked into a supramolecular layer in the ab plane by C—H···O interactions, Fig. 3 and Table 1; the layers inter-digitate along the c axis, Fig. 4.

Experimental

The title compound was prepared as reported (Carvalho et al., 2012b). The sample used in the crystallographic study was grown from its EtOH solution and intensity data was collected at the National Crystallographic Service, England (Coles & Gale, 2012).

Refinement

The C-bound H atoms were geometrically placed (C—H = 0.95 Å) and refined as riding with Uiso(H) = 1.2Ueq(C). The O– and N-bound H atoms were located from a difference map and refined with the distance restraint O—H = 0.84±0.01 and N—H = 0.88±0.01 Å, and with Uiso(H) = zUeq(carrier atom); z = 1.5 for O and z = 1.2 for N. In the absence of significant anomalous scattering effects, 1033 Friedel pairs were averaged in the final refinement. One reflection, i.e. (20 0 0) was omitted from the final refinement owing to poor agreement.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level.

Fig. 2.

Fig. 2.

A view of the supramolecular helical chain along the b axis in (I). The N—H···O hydrogen bonds are shown as blue dashed lines.

Fig. 3.

Fig. 3.

A view of the supramolecular layer in the ab plane in (I) sustained by N—H···O and interactions, shown as blue and orange dashed lines, respectively.

Fig. 4.

Fig. 4.

A view in projection down the b axis of the unit-cell contents for (I) showing the inter-digitation of layers. The N—H···O and C—H···O interactions are shown as blue and orange dashed lines, respectively.

Crystal data

C16H14N2O2 F(000) = 560
Mr = 266.29 Dx = 1.350 Mg m3
Orthorhombic, Pna21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 5659 reflections
a = 24.2707 (17) Å θ = 3.4–27.5°
b = 5.1322 (2) Å µ = 0.09 mm1
c = 10.5192 (4) Å T = 100 K
V = 1310.29 (12) Å3 Plate, colourless
Z = 4 0.19 × 0.09 × 0.03 mm

Data collection

Rigaku Saturn724+ diffractometer 1575 independent reflections
Radiation source: Rotating Anode 1504 reflections with I > 2σ(I)
Confocal monochromator Rint = 0.022
Detector resolution: 28.5714 pixels mm-1 θmax = 27.5°, θmin = 3.4°
profile data from ω–scans h = −30→31
Absorption correction: multi-scan (CrystalClear; Rigaku, 2011) k = −6→6
Tmin = 0.878, Tmax = 1.000 l = −13→13
5871 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075 w = 1/[σ2(Fo2) + (0.0497P)2 + 0.3579P] where P = (Fo2 + 2Fc2)/3
S = 0.93 (Δ/σ)max = 0.001
1575 reflections Δρmax = 0.20 e Å3
181 parameters Δρmin = −0.15 e Å3
1 restraint Absolute structure: nd
Primary atom site location: structure-invariant direct methods

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.69975 (5) 0.5777 (2) −0.10431 (12) 0.0192 (3)
H1O 0.7247 (7) 0.671 (4) −0.071 (2) 0.029*
O2 0.81273 (5) 1.1490 (3) −0.06463 (13) 0.0232 (3)
N1 0.75962 (6) 0.7782 (3) 0.07685 (14) 0.0150 (3)
N2 0.79692 (6) 0.9517 (3) 0.12637 (14) 0.0158 (3)
H2N 0.7997 (9) 0.959 (4) 0.2096 (10) 0.019*
C1 0.67996 (7) 0.4128 (3) −0.01381 (17) 0.0157 (3)
C2 0.69722 (7) 0.4288 (3) 0.11420 (17) 0.0140 (3)
C3 0.67560 (7) 0.2498 (3) 0.20137 (17) 0.0171 (4)
H3 0.6869 0.2577 0.2877 0.021*
C4 0.63806 (7) 0.0613 (3) 0.16428 (19) 0.0187 (4)
H4 0.6241 −0.0602 0.2244 0.022*
C5 0.62097 (7) 0.0517 (3) 0.03833 (19) 0.0201 (4)
H5 0.5947 −0.0753 0.0128 0.024*
C6 0.64170 (7) 0.2249 (3) −0.05053 (18) 0.0197 (4)
H6 0.6298 0.2157 −0.1365 0.024*
C7 0.73698 (7) 0.6215 (3) 0.15666 (17) 0.0150 (3)
H7 0.7463 0.6319 0.2442 0.018*
C8 0.82227 (7) 1.1293 (3) 0.04921 (17) 0.0156 (3)
C9 0.86435 (7) 1.2853 (3) 0.11785 (17) 0.0161 (3)
H9 0.8711 1.2542 0.2055 0.019*
C10 0.89272 (7) 1.4693 (3) 0.05648 (17) 0.0170 (3)
H10 0.8815 1.5065 −0.0281 0.020*
C11 0.93932 (7) 1.6197 (3) 0.10555 (17) 0.0159 (3)
C12 0.96062 (7) 1.8241 (3) 0.03252 (19) 0.0203 (4)
H12 0.9442 1.8652 −0.0469 0.024*
C13 1.00558 (8) 1.9677 (4) 0.0748 (2) 0.0226 (4)
H13 1.0196 2.1061 0.0242 0.027*
C14 1.03004 (7) 1.9097 (4) 0.19034 (19) 0.0225 (4)
H14 1.0606 2.0087 0.2193 0.027*
C15 1.00967 (7) 1.7064 (4) 0.26359 (18) 0.0210 (4)
H15 1.0266 1.6658 0.3426 0.025*
C16 0.96482 (7) 1.5624 (3) 0.22228 (18) 0.0177 (3)
H16 0.9512 1.4238 0.2732 0.021*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0245 (6) 0.0213 (6) 0.0118 (6) −0.0067 (5) −0.0012 (5) −0.0003 (5)
O2 0.0293 (7) 0.0274 (7) 0.0130 (6) −0.0075 (5) −0.0028 (6) −0.0001 (6)
N1 0.0147 (6) 0.0154 (6) 0.0149 (6) −0.0003 (5) −0.0009 (5) −0.0031 (6)
N2 0.0175 (7) 0.0183 (7) 0.0115 (7) −0.0035 (5) −0.0015 (6) −0.0028 (6)
C1 0.0148 (7) 0.0167 (7) 0.0154 (8) 0.0021 (6) 0.0008 (6) −0.0019 (7)
C2 0.0136 (7) 0.0144 (7) 0.0141 (8) 0.0011 (6) 0.0011 (6) −0.0023 (7)
C3 0.0170 (8) 0.0190 (8) 0.0154 (9) 0.0017 (6) 0.0011 (7) −0.0009 (7)
C4 0.0189 (8) 0.0156 (8) 0.0215 (9) −0.0003 (6) 0.0054 (7) 0.0021 (7)
C5 0.0175 (8) 0.0179 (8) 0.0248 (9) −0.0029 (6) 0.0001 (7) −0.0049 (7)
C6 0.0189 (8) 0.0225 (8) 0.0177 (8) −0.0014 (7) −0.0032 (7) −0.0041 (8)
C7 0.0150 (7) 0.0182 (8) 0.0118 (7) 0.0005 (6) −0.0007 (6) −0.0029 (7)
C8 0.0159 (7) 0.0166 (8) 0.0143 (8) 0.0010 (6) 0.0009 (6) −0.0013 (7)
C9 0.0167 (7) 0.0174 (8) 0.0141 (7) 0.0008 (6) −0.0010 (6) −0.0024 (7)
C10 0.0175 (8) 0.0176 (8) 0.0158 (8) 0.0015 (6) −0.0009 (7) −0.0018 (7)
C11 0.0148 (7) 0.0148 (7) 0.0180 (8) 0.0017 (6) 0.0028 (7) −0.0019 (7)
C12 0.0212 (8) 0.0180 (8) 0.0217 (9) 0.0004 (6) 0.0004 (7) 0.0039 (7)
C13 0.0207 (9) 0.0160 (8) 0.0312 (10) −0.0016 (6) 0.0038 (8) 0.0015 (8)
C14 0.0175 (8) 0.0189 (8) 0.0311 (11) −0.0004 (7) 0.0009 (7) −0.0060 (8)
C15 0.0178 (8) 0.0230 (9) 0.0223 (9) 0.0025 (7) −0.0015 (7) −0.0046 (8)
C16 0.0173 (7) 0.0174 (8) 0.0182 (8) 0.0010 (6) 0.0030 (7) −0.0001 (7)

Geometric parameters (Å, º)

O1—C1 1.361 (2) C7—H7 0.9500
O1—H1O 0.848 (10) C8—C9 1.485 (2)
O2—C8 1.224 (2) C9—C10 1.335 (2)
N1—C7 1.286 (2) C9—H9 0.9500
N1—N2 1.3727 (19) C10—C11 1.463 (2)
N2—C8 1.367 (2) C10—H10 0.9500
N2—H2N 0.879 (10) C11—C12 1.399 (2)
C1—C6 1.393 (2) C11—C16 1.406 (2)
C1—C2 1.413 (3) C12—C13 1.390 (3)
C2—C3 1.400 (2) C12—H12 0.9500
C2—C7 1.452 (2) C13—C14 1.385 (3)
C3—C4 1.385 (2) C13—H13 0.9500
C3—H3 0.9500 C14—C15 1.388 (3)
C4—C5 1.389 (3) C14—H14 0.9500
C4—H4 0.9500 C15—C16 1.386 (2)
C5—C6 1.385 (3) C15—H15 0.9500
C5—H5 0.9500 C16—H16 0.9500
C6—H6 0.9500
C1—O1—H1O 108.1 (18) O2—C8—C9 124.15 (16)
C7—N1—N2 116.09 (15) N2—C8—C9 112.36 (15)
C8—N2—N1 120.28 (15) C10—C9—C8 120.06 (16)
C8—N2—H2N 122.0 (15) C10—C9—H9 120.0
N1—N2—H2N 117.1 (15) C8—C9—H9 120.0
O1—C1—C6 118.13 (17) C9—C10—C11 126.95 (16)
O1—C1—C2 121.73 (15) C9—C10—H10 116.5
C6—C1—C2 120.14 (17) C11—C10—H10 116.5
C3—C2—C1 118.36 (15) C12—C11—C16 118.26 (16)
C3—C2—C7 119.64 (16) C12—C11—C10 119.17 (16)
C1—C2—C7 121.99 (16) C16—C11—C10 122.55 (16)
C4—C3—C2 121.36 (17) C13—C12—C11 120.80 (18)
C4—C3—H3 119.3 C13—C12—H12 119.6
C2—C3—H3 119.3 C11—C12—H12 119.6
C3—C4—C5 119.33 (17) C14—C13—C12 120.23 (18)
C3—C4—H4 120.3 C14—C13—H13 119.9
C5—C4—H4 120.3 C12—C13—H13 119.9
C6—C5—C4 120.84 (17) C13—C14—C15 119.73 (17)
C6—C5—H5 119.6 C13—C14—H14 120.1
C4—C5—H5 119.6 C15—C14—H14 120.1
C5—C6—C1 119.96 (17) C16—C15—C14 120.44 (17)
C5—C6—H6 120.0 C16—C15—H15 119.8
C1—C6—H6 120.0 C14—C15—H15 119.8
N1—C7—C2 120.60 (16) C15—C16—C11 120.54 (17)
N1—C7—H7 119.7 C15—C16—H16 119.7
C2—C7—H7 119.7 C11—C16—H16 119.7
O2—C8—N2 123.43 (16)
C7—N1—N2—C8 −178.71 (15) N1—N2—C8—O2 1.8 (3)
O1—C1—C2—C3 −179.07 (15) N1—N2—C8—C9 −175.41 (14)
C6—C1—C2—C3 1.0 (2) O2—C8—C9—C10 3.3 (3)
O1—C1—C2—C7 0.0 (2) N2—C8—C9—C10 −179.52 (15)
C6—C1—C2—C7 −179.97 (16) C8—C9—C10—C11 −172.84 (16)
C1—C2—C3—C4 −0.2 (2) C9—C10—C11—C12 −173.45 (17)
C7—C2—C3—C4 −179.29 (15) C9—C10—C11—C16 8.4 (3)
C2—C3—C4—C5 −0.8 (3) C16—C11—C12—C13 −0.4 (3)
C3—C4—C5—C6 1.1 (3) C10—C11—C12—C13 −178.64 (16)
C4—C5—C6—C1 −0.4 (3) C11—C12—C13—C14 0.1 (3)
O1—C1—C6—C5 179.34 (15) C12—C13—C14—C15 0.4 (3)
C2—C1—C6—C5 −0.7 (3) C13—C14—C15—C16 −0.4 (3)
N2—N1—C7—C2 −179.55 (14) C14—C15—C16—C11 0.1 (3)
C3—C2—C7—N1 176.11 (15) C12—C11—C16—C15 0.3 (2)
C1—C2—C7—N1 −2.9 (2) C10—C11—C16—C15 178.50 (16)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1o···N1 0.85 (2) 1.86 (2) 2.6080 (19) 147 (2)
N2—H2n···O1i 0.88 (1) 2.05 (1) 2.9070 (19) 165 (2)
C3—H3···O2ii 0.95 2.54 3.215 (2) 128
C7—H7···O2ii 0.95 2.47 3.174 (2) 131

Symmetry codes: (i) −x+3/2, y+1/2, z+1/2; (ii) −x+3/2, y−1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6860).

References

  1. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Carvalho, S. A., da Silva, E. F., de Souza, M. V. N., Tiekink, E. R. T., Wardell, J. L. & Wardell, S. M. S. V. (2012a). Acta Cryst. E68, o2255–o2256. [DOI] [PMC free article] [PubMed]
  3. Carvalho, S. A., Feitosa, L. O., Soares, M., Costa, T. E. M. M., Henriques, M. G., Salomão, K., de Castro, S. L., Kaiser, M., Brun, R., Wardell, J. L., Wardell, S. M. S. V., Trossini, G. H. G., Andricopulo, A. D., da Silva, E. F. & Fraga, C. A. M. (2012b). Bioorg. Med. Chem DOI:10.1016/j.ejmech.2012.05.041.
  4. Coles, S. J. & Gale, P. A. (2012). Chem. Sci. 3, 683–689.
  5. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  6. Rigaku (2011). CrystalClear Rigaku/MSC Inc., The Woodlands, Texas, USA.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028516/hb6860sup1.cif

e-68-o2253-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028516/hb6860Isup2.hkl

e-68-o2253-Isup2.hkl (76.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812028516/hb6860Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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