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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Aug 4;68(Pt 9):m1149. doi: 10.1107/S1600536812033739

Diaqua­bis­(1H-imidazole-κN 3)bis­(4-nitro­benzoato-κO 1)cadmium

Yan-Li Mao a, Xiao-Ke Yu a, Jian-Li Lin a,*
PMCID: PMC3435578  PMID: 22969451

Abstract

In the centrosymmetric title compound, [Cd(C7H4NO4)2(C3H4N2)2(H2O)2], the CdII atom, located on an inversion center, is coordinated by two N atoms and four O atoms in an octa­hedral geometry. The inter­nal cohesion of the mol­ecule is enhanced by an intra­molecular O—H⋯O hydrogen bond. Inter­molecular O—H⋯O and C—H⋯O hydrogen bonds and π–π contacts [centroid–centroid distance = 3.6549 (2) Å] define two-dimensional networks parallel to (001), which are further connected by weaker C—H⋯O inter­actions into a weakly connected three-dimensional supra­molecular framework.

Related literature  

For general background to aromatic carboxyl acid complexes, see: Kuang et al. (2007); Hsu et al. (2011). For related structures, see: Zheng et al. (2008).graphic file with name e-68-m1149-scheme1.jpg

Experimental  

Crystal data  

  • [Cd(C7H4NO4)2(C3H4N2)2(H2O)2]

  • M r = 614.80

  • Triclinic, Inline graphic

  • a = 5.8017 (12) Å

  • b = 8.0253 (16) Å

  • c = 12.879 (3) Å

  • α = 77.99 (3)°

  • β = 88.42 (3)°

  • γ = 85.16 (3)°

  • V = 584.4 (2) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 1.00 mm−1

  • T = 293 K

  • 0.33 × 0.14 × 0.09 mm

Data collection  

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.989, T max = 0.989

  • 5719 measured reflections

  • 2627 independent reflections

  • 2511 reflections with I > 2σ(I)

  • R int = 0.031

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.026

  • wR(F 2) = 0.076

  • S = 1.24

  • 2627 reflections

  • 175 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.54 e Å−3

  • Δρmin = −0.80 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812033739/bg2473sup1.cif

e-68-m1149-sup1.cif (15.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033739/bg2473Isup2.hkl

e-68-m1149-Isup2.hkl (129KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5A⋯O2 0.84 (1) 1.88 (1) 2.679 (1) 159
O5—H5B⋯O1i 0.84 (1) 1.97 (1) 2.785 (1) 164
C2—H2A⋯O5ii 0.93 2.58 3.244 (1) 129
C3—H3A⋯O5iii 0.93 2.43 3.344 (1) 169
C10—H10A⋯O2 0.93 2.42 2.751 (4) 101

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

This project was supported by the Scientific Research Fund of Ningbo University (grant No. XKL069). Sincere thanks are also extended to the K. C. Wong Magna Fund in Ningbo University.

supplementary crystallographic information

Comment

Aromatic carboxyl acid complexes have been paid great attention these years for their potential applications in gas storage, separation, catalysis, magnetism, luminescence, and drug delivery (Kuang et al., 2007). As a N-containing aromatic carboxyl acid, nitrobenzoic acid has been widely used in dye intermediate, organic synthesis, sensitization material, functional pigment (Hsu et al., 2011). So far, to our knowledge, cadmium complexes constructed from 4-nitrobenzoato and imidazole have not been reported. In order to get new CdII complexes with novel functions and discover their structure-property relationship, a new complex [Cd(C7H4NO4)(C3H4N2)(H2O)] was synthesized.

The asymmetric unit of [Cd(C7H4NO4)(C3H4N2)(H2O)] consists of a Cd2+ ion lying on an inversion centre, a 4-NBA- ion (4-HNBA = 4-nitrobenzoic acid), one imidazole ligand and one lattice water as illustrated in Fig. 1. The Cd2+ cation is octahedrally coordinated by two N atoms of imidazole ligands, two O atoms from two 4-NBA- ions and two O atoms from two lattice water molecules; it takes a (4 + 2) octahedral geometry, with the oxygen atoms located in the equatorial plane (Cd—O1 = 2.364 (2) Å, Cd—O5 = 2.367 (2) Å, and the two nitrogen atoms occupying the axial position (Cd—N1 = 2.255 (2) Å). Table 1 presents the \p···\p contact information involving the C3N2 ring (centroid, Cg1) and Table 2, the more meaningful H-bonds in the structure; the most important ones are those involving water H's. The one described in the first entry in Table 2 is intramolecular; the seocnd one, instead defines chains along a (Figure 2, vertical arrays). The weak one involving C2—H2A (Table 2, third entry) and the π–π contact (Table 1) link chains into a two-dimensional supramolecular network parallel to (001) as illustrated in Figure 2. Finaly, the remaining weak H-bonds link these 2D structures into a 3D supramolecular architecture (Figure 3).

Experimental

Dropwise addition of 1.0 ml (1 M) of K2CO3 to a stirred aqueous solution of Cd(CH3COO)2.2H2O (0.266 g, 1.0 mmol) in 10.0 ml of H2O yielded a fine white precipitate, which was separated by centrifugation and washed with water until no CH3COO- anions were detectable in the supernatant. The fresh precipitate was then added to a stirred aqueous solution of 4-nitrobenzoic acid (0.167 g, 1.0 mmol) in C2H5OH/H2O (1:1, 20.0 ml), producing a white suspension, to which imidazole (0.137 g, 2.0 mmol) was added. The mixture was further stirred vigorously for about 0.5 h. After filtration, the white filtrate (pH = 6.59) was maintained at room temperature and colorless crystals were grown.

Refinement

H atoms bonded to C atoms were palced in geometrically calculated positions and were refined using a riding model. H atoms attached to O atoms were found in a difference Fourier synthesis and were refined with restrained O—H = 0.84 (1)Å. In all cases, Uiso(H) values were set at 1.2 Ueq(host).

Figures

Fig. 1.

Fig. 1.

Figure 1. ORTEP view of the title compound, The dispalcement ellipsoidsare drawn at 45% probability dispalcement ellipsoids. Symmetry code: (v)1-x, 2-y, -z.

Fig. 2.

Fig. 2.

The two-dimensional supramolecular networks parallel to (001). In order to observe how the complex moleculars form two-dimensional layers clearly, nitrobenzene on 4-nitrobenzoato molecules which are not engaged in link the components into a two-dimensional layers were omitted.

Fig. 3.

Fig. 3.

The three-dimensional framework of title complex.

Crystal data

[Cd(C7H4NO4)2(C3H4N2)2(H2O)2] Z = 1
Mr = 614.80 F(000) = 308
Triclinic, P1 Dx = 1.747 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 5.8017 (12) Å Cell parameters from 5719 reflections
b = 8.0253 (16) Å θ = 3.2–27.5°
c = 12.879 (3) Å µ = 1.00 mm1
α = 77.99 (3)° T = 293 K
β = 88.42 (3)° Plate, colorless
γ = 85.16 (3)° 0.33 × 0.14 × 0.09 mm
V = 584.4 (2) Å3

Data collection

Rigaku R-AXIS RAPID diffractometer 2627 independent reflections
Radiation source: fine-focus sealed tube 2511 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.031
ω scans θmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) h = −6→7
Tmin = 0.989, Tmax = 0.989 k = −10→10
5719 measured reflections l = −16→16

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076 H atoms treated by a mixture of independent and constrained refinement
S = 1.24 w = 1/[σ2(Fo2) + (0.0208P)2 + 0.3927P] where P = (Fo2 + 2Fc2)/3
2627 reflections (Δ/σ)max < 0.001
175 parameters Δρmax = 0.54 e Å3
3 restraints Δρmin = −0.80 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cd 0.5000 1.0000 0.0000 0.03040 (10)
N1 0.4161 (4) 0.7310 (3) 0.07261 (18) 0.0351 (5)
C1 0.5412 (6) 0.6131 (4) 0.1376 (3) 0.0497 (8)
H1A 0.6844 0.6290 0.1632 0.060*
C2 0.2360 (6) 0.4946 (4) 0.1116 (3) 0.0518 (8)
H2A 0.1261 0.4160 0.1136 0.062*
N2 0.4388 (5) 0.4676 (3) 0.1627 (2) 0.0500 (7)
C3 0.2227 (6) 0.6573 (4) 0.0569 (3) 0.0510 (8)
H3A 0.0992 0.7108 0.0147 0.061*
O1 0.7532 (3) 0.9739 (3) 0.14420 (15) 0.0384 (5)
O2 0.4950 (4) 1.0755 (3) 0.25118 (18) 0.0553 (6)
C4 0.6746 (5) 0.9881 (4) 0.2347 (2) 0.0336 (6)
C5 0.8110 (5) 0.8918 (4) 0.3301 (2) 0.0343 (6)
C6 1.0191 (5) 0.7974 (4) 0.3212 (2) 0.0398 (7)
H6A 1.0781 0.7893 0.2544 0.048*
C7 1.1397 (5) 0.7150 (4) 0.4110 (2) 0.0451 (7)
H7A 1.2798 0.6518 0.4054 0.054*
C8 1.0480 (5) 0.7285 (4) 0.5088 (2) 0.0421 (7)
C9 0.8406 (6) 0.8178 (5) 0.5205 (3) 0.0581 (10)
H9A 0.7807 0.8235 0.5875 0.070*
C10 0.7234 (6) 0.8990 (5) 0.4301 (3) 0.0568 (9)
H10A 0.5821 0.9601 0.4365 0.068*
N3 1.1799 (5) 0.6471 (4) 0.6046 (2) 0.0548 (7)
O3 1.3619 (6) 0.5690 (5) 0.5945 (3) 0.1018 (13)
O4 1.1007 (6) 0.6639 (5) 0.6907 (2) 0.0890 (10)
O5 0.1847 (3) 1.1006 (3) 0.09734 (16) 0.0385 (5)
H5A 0.252 (5) 1.088 (4) 0.1559 (14) 0.046*
H5B 0.069 (4) 1.043 (4) 0.112 (2) 0.046*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cd 0.03111 (16) 0.02902 (15) 0.02818 (15) −0.00363 (11) −0.00305 (10) 0.00151 (10)
N1 0.0371 (12) 0.0309 (11) 0.0343 (12) −0.0032 (10) −0.0033 (10) 0.0009 (9)
C1 0.0417 (17) 0.0403 (16) 0.060 (2) −0.0052 (14) −0.0155 (15) 0.0081 (14)
C2 0.057 (2) 0.0329 (15) 0.063 (2) −0.0156 (15) −0.0132 (17) 0.0023 (14)
N2 0.0605 (17) 0.0342 (13) 0.0488 (16) −0.0008 (13) −0.0064 (13) 0.0059 (11)
C3 0.0523 (19) 0.0360 (15) 0.061 (2) −0.0116 (15) −0.0226 (16) 0.0051 (14)
O1 0.0343 (10) 0.0508 (12) 0.0283 (10) −0.0078 (9) −0.0042 (8) −0.0022 (8)
O2 0.0432 (12) 0.0741 (16) 0.0449 (13) 0.0183 (12) −0.0127 (10) −0.0115 (11)
C4 0.0287 (13) 0.0375 (14) 0.0339 (14) −0.0045 (12) −0.0064 (11) −0.0045 (11)
C5 0.0330 (14) 0.0394 (14) 0.0291 (14) −0.0040 (12) −0.0038 (11) −0.0031 (11)
C6 0.0398 (15) 0.0456 (16) 0.0306 (14) 0.0047 (13) −0.0003 (12) −0.0034 (12)
C7 0.0398 (16) 0.0488 (17) 0.0413 (17) 0.0117 (14) −0.0032 (13) −0.0023 (13)
C8 0.0430 (16) 0.0457 (16) 0.0331 (15) −0.0038 (14) −0.0107 (12) 0.0036 (12)
C9 0.052 (2) 0.090 (3) 0.0283 (16) 0.0104 (19) 0.0000 (14) −0.0078 (16)
C10 0.0446 (18) 0.087 (3) 0.0346 (17) 0.0216 (18) −0.0033 (14) −0.0120 (16)
N3 0.0543 (18) 0.0620 (18) 0.0407 (16) −0.0015 (15) −0.0138 (13) 0.0067 (13)
O3 0.079 (2) 0.147 (3) 0.0583 (19) 0.052 (2) −0.0207 (16) 0.0044 (19)
O4 0.090 (2) 0.131 (3) 0.0339 (15) 0.017 (2) −0.0135 (14) 0.0035 (16)
O5 0.0283 (10) 0.0424 (11) 0.0415 (12) −0.0039 (9) −0.0024 (8) −0.0005 (9)

Geometric parameters (Å, º)

Cd—N1i 2.254 (2) C4—C5 1.513 (4)
Cd—N1 2.254 (2) C5—C10 1.383 (4)
Cd—O1i 2.364 (2) C5—C6 1.385 (4)
Cd—O1 2.364 (2) C6—C7 1.383 (4)
Cd—O5i 2.370 (2) C6—H6A 0.9300
Cd—O5 2.370 (2) C7—C8 1.375 (4)
N1—C1 1.308 (4) C7—H7A 0.9300
N1—C3 1.351 (4) C8—C9 1.369 (5)
C1—N2 1.330 (4) C8—N3 1.471 (4)
C1—H1A 0.9300 C9—C10 1.377 (5)
C2—N2 1.343 (4) C9—H9A 0.9300
C2—C3 1.345 (4) C10—H10A 0.9300
C2—H2A 0.9300 N3—O3 1.199 (4)
C3—H3A 0.9300 N3—O4 1.218 (4)
O1—C4 1.263 (3) O5—H5A 0.842 (10)
O2—C4 1.245 (4) O5—H5B 0.842 (10)
Cg1···Cg1ii 3.6549 (2)
N1i—Cd—N1 180.0 C4—O1—Cd 120.39 (17)
N1i—Cd—O1i 86.19 (8) O2—C4—O1 125.1 (3)
N1—Cd—O1i 93.81 (8) O2—C4—C5 117.7 (3)
N1i—Cd—O1 93.81 (8) O1—C4—C5 117.2 (2)
N1—Cd—O1 86.19 (8) C10—C5—C6 118.9 (3)
O1i—Cd—O1 180.0 C10—C5—C4 118.3 (3)
N1i—Cd—O5i 88.39 (8) C6—C5—C4 122.8 (3)
N1—Cd—O5i 91.61 (8) C7—C6—C5 120.5 (3)
O1i—Cd—O5i 91.85 (7) C7—C6—H6A 119.8
O1—Cd—O5i 88.15 (7) C5—C6—H6A 119.8
N1i—Cd—O5 91.61 (8) C8—C7—C6 118.5 (3)
N1—Cd—O5 88.39 (8) C8—C7—H7A 120.7
O1i—Cd—O5 88.15 (7) C6—C7—H7A 120.7
O1—Cd—O5 91.85 (7) C9—C8—C7 122.5 (3)
O5i—Cd—O5 180.0 C9—C8—N3 118.7 (3)
C1—N1—C3 105.2 (2) C7—C8—N3 118.8 (3)
C1—N1—Cd 128.3 (2) C8—C9—C10 118.0 (3)
C3—N1—Cd 126.52 (19) C8—C9—H9A 121.0
N1—C1—N2 111.8 (3) C10—C9—H9A 121.0
N1—C1—H1A 124.1 C9—C10—C5 121.5 (3)
N2—C1—H1A 124.1 C9—C10—H10A 119.2
N2—C2—C3 106.7 (3) C5—C10—H10A 119.2
N2—C2—H2A 126.6 O3—N3—O4 122.8 (3)
C3—C2—H2A 126.6 O3—N3—C8 118.8 (3)
C1—N2—C2 106.7 (3) O4—N3—C8 118.4 (3)
C2—C3—N1 109.6 (3) Cd—O5—H5A 98 (2)
C2—C3—H3A 125.2 Cd—O5—H5B 120 (2)
N1—C3—H3A 125.2 H5A—O5—H5B 104 (2)

Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x+1, −y+1, −z.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O5—H5A···O2 0.84 (1) 1.88 (1) 2.679 (1) 159
O5—H5B···O1iii 0.84 (1) 1.97 (1) 2.785 (1) 164
C2—H2A···O5iv 0.93 2.58 3.244 (1) 129
C3—H3A···O5v 0.93 2.43 3.344 (1) 169
C10—H10A···O2 0.93 2.42 2.751 (4) 101

Symmetry codes: (iii) x−1, y, z; (iv) x, y−1, z; (v) −x, −y+2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BG2473).

References

  1. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  2. Hsu, S.-C., Lo, S.-H., Kao, C.-C. & Lin, C.-H. (2011). Acta Cryst. E67, m65. [DOI] [PMC free article] [PubMed]
  3. Kuang, Y.-F., Li, C.-H., Li, W. & Yang, Y.-Q. (2007). Chin. J. Struct. Chem. 26, 749–752.
  4. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  5. Rigaku/MSC (2004). CrystalStructure Rigaku/MSC Inc., The Woodlands, Texas, USA.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Zheng, Y.-Q., Cheng, D.-Y., Lin, J.-L., Li, Z.-F. & Wang, X.-W. (2008). Eur. J. Inorg. Chem. pp. 4453–4461.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812033739/bg2473sup1.cif

e-68-m1149-sup1.cif (15.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033739/bg2473Isup2.hkl

e-68-m1149-Isup2.hkl (129KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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