Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 2025 May 15;122(22):e2413207122. doi: 10.1073/pnas.2413207122

A universally applicable definition for domestication

Kathryn A Lord a,b,1, Greger Larson c, Robin G Allaby d, Elinor K Karlsson a,b
PMCID: PMC12146738  PMID: 40372471

Abstract

The process of domestication is commonly perceived as a human achievement, and domestic species are typically assumed to be those under human control. Domestic species have emerged from a greater diversity of interactions than this perspective allows, and none of the many definitions proposed for domestication can readily, reliably, and consistently distinguish domestic and nondomestic populations. Here, we propose that the process of domestication should instead be defined solely as evolution of a nonhuman population in response to an anthropogenic niche and that a domestic population is one that cannot sustain itself outside of an anthropogenic niche. As a result, this definition does not require comparisons with a presumed and largely unobservable ancestor. Instead, it focuses on the observable relationship between a nonhuman population and humans. It also avoids making assumptions about how domestication happens, thus enabling an exploration of the mechanisms underlying the process of adaptation to an anthropogenic niche. By applying this definition to plants, animals, and microbes, we illustrate its utility for investigating the evolution of the relationship between humans and other species and for anticipating which species are likely to survive in an increasingly human-influenced world. Domestication is simply an evolutionary process resulting from the interaction between two species, one of which is human. As we work to protect Earth’s biodiversity, this definition allows us to understand why, in response to the conditions human societies create, some species survive and thrive, while others struggle and go extinct.

Keywords: natural selection, anthropogenic, biodiversity, symbiosis, extinction


People have interacted with a wide variety of plants and animals as they dispersed across the globe. However, relationships we refer to as domestic appear in the archaeological record only within the last ~20,000 y—just ~3% of our species’ existence (1). Since then, our interactions with domestic species have reshaped the planet, and agriculture and rangelands now covering a third of Earth’s unfrozen land surface (2). Humans, livestock, and pets now comprise 94% of the global mammalian biomass (3). Domestication underpins modern human societies and is a contributor to climate change (4, 5). Despite its enormous impact, there is little agreement regarding how to define either the state of being a domestic species or the process of domestication.

The False Dichotomy of Artificial and Natural Selection.

It is often presumed that domestication is distinct from other forms of evolution. This dichotomy originated with Charles Darwin (6) who used contemporary animal breeding practices to illustrate how selection and differential survival of offspring led to shifts in measurable traits through time. While this was a persuasive analogy for the efficacy of selection, its unfortunate legacy has been to falsely dichotomize domestication as something that occurs through a process of intentional, “artificial” selection that is necessarily distinct from the processes that shape the rest of the natural world.

Problems with Previous Attempts to Define Domestication

Most attempts to define what a domestic organism is, whether plant, animal, or microbe, are based on notions of human control, intentionality, and exceptionalism. Domestic animals are often defined as those whose lives, including feeding, hazard avoidance, and reproduction are controlled by humans (713), and domestic plants as those that require cultivation and human propagation (14, 15).

Most Populations Considered Domestic Are Not Under Human Control.

Many agricultural plant species, including blackberries, barley, and alfalfa, are also weeds that cause economic losses and ecological damage by growing where they are unwanted (16). Large populations of dogs, cats, pigs, deer, horses, goats, and donkeys thrive despite intensive efforts to cull or sterilize them (1720) (Fig. 1A). Free-living pigs are estimated to cause $800 million per year in damages in the United States alone (21). While some free-living populations are established by individuals who have strayed from human control, this should not be the default assumption, particularly when the global free-living population is much larger than the controlled population. For example, between 76 and 83% of all dogs live outside of direct human control (22).

Fig. 1.

Fig. 1.

Populations that thrive in areas of human disturbance. Four examples of domestic populations include (A) dogs (Image credit: G. Cimarelli), (B) house sparrows (Image credit: E. Pracht), (C) some populations of fruit flies (Image credit: D. Genereux), and (D) some populations of Arabidopsis (Image credit: M. Nordborg).

Conflating Current Utility with Historical Origin.

Criteria for domestication that center upon intentionality and control are often predicated on the assumption that modern relationships between humans and other taxa are reflective of their historic relationships. Certainly within evolutionary biology, this assumption has been shown to be invalid. Presuming that the modern state of domestic populations can be applied to the process that led to them would, to paraphrase Gould, be the equivalent of conflating current utility with historical origin (23). Today, nearly all chickens are raised for consumption, but the initial stages of chicken domestication were driven not by human exploitation but by the arrival of dry rice agricultural practices, which attracted red junglefowl (24). It took more than 500 y for chickens to become part of human diets (25). This pattern of shifting relationships with domestic populations, often driven by changes in lifeways or cultural taboos, is common.

The presence of useful traits in a domestic population is not on its own evidence of intentional selection. For example, even though large grain size in plants benefits humans by increasing crop yields, an analysis of archaeometric grain measurements suggests that it is not associated with selection for yield (26). Instead, large grain size emerged from competitive behavior between seedlings in the anthropogenic niche.

Attempts to Avoid Assumptions of Control and Intentionality.

Recent pathway-focused frameworks for domestication try to avoid assumptions of control and intentionality, but still look backward from modern taxa assumed to be domestic using definitions of control. In animals, the codification of a framework that describes multiple distinct pathways for domestication (12, 27) includes a commensal pathway that explicitly allows for some taxa to be attracted to anthropogenic niches, rather than being the deliberate targets of human intention. In plants, seven distinct ecological pathways into domestication have been described (28, 29).

Some authors have proposed defining domestication within existing evolutionary processes like mutualism and coevolution (3034). However, many populations considered domestic may not be in a mutualistic relationship with humans. A mutualistic relationship improves the evolutionary fitness of both species when considering all aspects of the interspecies relationship (SI Appendix, Table S1) (35). This is difficult to prove since even if humans benefit in one way (e.g., increased food supplies), other less-noticed facets of the interspecies relationship may counterbalance this, yielding no net increase in fitness. For humans, agriculture increased carbohydrate intake, worsening dental health and leading to vitamin and mineral deficiencies (36). Farming of animals introduced new pathogens (37). The measles virus most likely emerged from a spillover of the rinderpest virus from domestic cattle into humans (38) and subsequently spread to infect nearly every human in childhood (causing short-term mortality and long-term immune dysfunction) until the advent of vaccines (39, 40).

Coevolution may be even more difficult to demonstrate than mutualism. Coevolution requires reciprocal evolutionary change in the human population in response to the evolutionary changes in the domestic population (41). For example, selection in human populations for lactase persistence, which facilitates the digestion of milk in adulthood, may be a response to cattle and camel domestication (42). However, detecting selection within the timeframe of domestication (<20,000 y), particularly in long-lived humans, is extremely difficult (43), and even when selection is detected in both species, it may not be reciprocal. The extra copies of the starch processing gene amylase in some human populations have been proposed to reflect adaptation to a starch-rich diet concurrent with agriculture, but other research shows the selection-predated agriculture by hundreds of thousands of years (4446).

The use of coevolution as a criterion for domestication is also ambiguous since the term is sometimes used to describe a relationship that requires only cultural change in humans (12, 34, 47) rather than a biological process. Using the term “codevelopment” instead would avoid this ambiguity (12) but does not eliminate the burden of showing a reciprocal relationship between the cultural change in humans and the evolutionary change in the domestic population.

All Definitions Require Comparisons to an Unobservable Ancestor.

It is almost never possible to directly compare domestic populations to a wild ancestor. The sole exception is long-term evolutionary studies that maintain stocks of the progenitor populations. A study that selected for rapidly growing budding yeast for ~10,000 generations used samples stored at early time points to show that mutations in the adenine biosynthesis pathway confer dramatic increases in fitness that persisted over time (48). More often, the wild representative of the ancestral population is either unknown [as with yams (Dioscorea alata) (49)] or is extinct.

Even when a wild population is extant, it is as genetically diverged from the ancestor as the domestic population, has also evolved due to selection and drift, and is unlikely to be a suitable phenotypic proxy for the ancestral wild population. Comparisons between modern domestic and wild populations are also complicated by porous genetic boundaries. For example, modern western Eurasian pigs were initially derived from Near Eastern wild boar, but they interbred so extensively with European wild boar that they lost virtually all their Anatolian ancestry (50). In the 19th century, East Asian pigs were imported into Europe. Most commercial pigs today have substantial (>30%) ancestry from East Asian sources (51).

An alternative approach is to compare domestic populations to archaeological remains of the wild ancestor, but determining whether an organism was wild or domestic from archaeological context alone is difficult. Evidence of use is not the same as evidence of control (or mutualism). For example, only one of two genetically similar yeast strains isolated from ancient Egyptian beer brewing vessels possessed genetic changes consistent with adaptation for beer production, even though both were sampled from similar contexts, suggesting that one strain was not domestic (52). More generally, the domestication process is multigenerational and thus resists simple dichotomous characterization (53). Even the use of a wide variety of morphological, genetic, isotopic, and contextual approaches to distinguish wolves and dogs, for example, has failed to clearly establish the domestic status of early archaeological canid remains (54).

Defining Domestication Through Morphological Proxies.

Some have used a suite of observable traits (e.g., animal color, size or shape, and plant architecture), collectively described as the domestication syndrome, to distinguish domestic individuals. However, numerous studies question whether the syndrome exists as a useful unifying theme (5561). Validating the domestication syndrome requires first defining which populations are domestic, so that the syndrome traits can be compared between domestic and wild populations. Using the syndrome to define domestic populations presents a circular reasoning challenge.

Proliferating Domestication Neologisms

In the absence of a clear definition for domestication, neologisms have proliferated. We documented 13 neologisms which have collectively been incorporated into 38 distinct definitions (SI Appendix, Table S2). Many attempt to address the ambiguity inherent within the terms domestic, domestication, and domesticated. If the term domestication was clear and universally applicable, there would be no need to append the word to create neologisms for specific contexts.

Many of these new terms have multiple usages. For example, usages of “semidomestic” include 1) wild populations being bred in captivity (deer mice, mango ginger, and fencepost trees) (62, 63); 2) useful domestic populations no longer under human care (feral lima beans and passion fruit) (63); and 3) populations under partial or indirect human care (reindeer, elephants, and mongoose) (6466). Self- and autodomestication are both used to describe evolutionary change in populations adapting to the anthropogenic niche, but not under human control (67, 68). Self-domestication is also used to describe an increased frequency of alleged domestication-related traits in populations that live entirely independent of humans, such as bonobos (69), while autodomestication is also used to describe the taming through habituation of populations who normally live independent of humans, such as big-horned sheep (70). The need to adopt a neologism rather than using more conventional terminology is often unclear. “Self-domestication,” for example, is used to describe the evolutionary process of a population adapting to a new niche through natural selection (67).

These neologisms have also been applied to humans to describe behavioral evolution outside the context of a relationship with any other species. This is particularly problematic as these neologisms often carry an implied value. For example, being more (hyperdomestic) or less (hypodomestic) domestic is variously equated with either being more civilized or less fit (degenerate) (71).

A Formal Definition of Domestication

We propose that domestication be defined simply as evolution in response to an anthropogenic niche. It is the process in which a nonhuman population adapts to an environment created through human activity. Like all other evolutionary processes, it acts on individual populations. Using this definition, all self-sustaining populations of any species can be positioned on a continuum ranging from those that are wild and thrive in the least human disturbed areas, to those that require regular human disturbance (Fig. 2). In ecology, a disturbance is a temporary change in environmental conditions, and human or anthropogenic disturbance is a disturbance caused by human activity (72). Along this continuum, we propose that the term “domestic” should refer solely to those populations that are obligate synanthropes and have adapted to an anthropogenic environment to the extent that only sink populations (in which the death rate is higher than the birth rate) exist outside of that niche.

Fig. 2.

Fig. 2.

The domestication spectrum. Under the new definition, populations can be categorized along a spectrum of domestication types that are defined by their relationship with the anthropogenic niche. Circles and gradients indicate where populations are observed. Dashed lines demarcate categories where no populations are observed. Overlapping circles with silhouettes represent admixture between wild and domestic subspecies. Asterisks indicate populations observed only through human translocations. Expanded version in SI Appendix, Fig. S1.

A population’s domestication status is therefore based only on its relationship with an anthropogenic niche and not in comparison to an unobservable ancestor. If a population thrives amid human disturbance, it can be classified as a human exploiter. If there is also evidence it cannot survive independently of an anthropogenic niche, it is classified as obligate synanthrope. Once a population transitions to obligate synanthrope (domestic), subsequent manipulation (e.g., lab animals, breeds, and elite crop lines) does not make it “more” or “super” domestic (73) (SI Appendix).

This definition addresses the legacy of ambiguity and proliferating exceptions and modifications that have consistently plagued all definitions of domestication. It can be applied to any population of organisms, including microbes, plants, and animals. It eliminates the false dichotomy that has historically separated domestication and “natural” evolution, and avoids making assumptions about how the process of domestication unfolds. The only thing that sets domestication apart from other terms is that it specifically refers to those evolutionary processes that occur in response to an anthropogenic niche.

Evolution within the human context is not extraordinary; it functions just as it does in all other organisms. However, as humans, we have a particular interest in the evolutionary stories that involve us. This definition also obviates the need for qualifying the terms through neologisms, all of which can be defined either within the domestication spectrum or by existing terminology in evolutionary biology. Finally, it clarifies that domestication is not a concept that should be applied in the absence of a human-created environment or in the absence of a nonhuman organism. Humans define the anthropogenic niche and cannot be more or less adapted to it.

Assessing Domestication at the Species Level.

This definition allows for domestication to be assessed within species by considering the distribution of populations along the spectrum of relationships with the anthropogenic niche (Fig. 3). In many species, populations are distributed broadly across the spectrum. However, in some species, like house cats, nearly all populations (representing ~98% of all cats) cluster at the obligate synanthrope end of the distribution, suggesting a species-level classification of domestic. House cats, whether family pets or free-living, are not found outside of anthropogenic environments in which they can avoid predators and access human-related food (74) with the exception of human-transplanted populations in places like Australia (75). This is demonstrated by a large-scale photo trapping study that collected data over the course of 4,000 nights in a Mediterranean forested area with scattered farms (76). Cats were only ever seen at farms still in use.

Fig. 3.

Fig. 3.

Operationalizing the new definition for domestication to investigate ecological and conservation topics. We hypothesize that the distribution of populations within a species on the domestication spectrum may help predict whether the species is endangered, likely to be invasive in new environments, will tolerate captivity, and if it can be successfully established as a laboratory model.

Applying the Definition

We propose that domestication spans a continuum that ranges from obligate recluse (those that thrive in the absence of human disturbance) to fully domestic populations. Any self-sustaining population can be placed on this continuum based on the level of human disturbance it will tolerate. Below, we delineate five categories along this continuum to help operationalize this new definition. Populations may fall between categorizations and shift their position with successive generations.

Category 1. Obligate Recluse Populations Thrive in the Absence of Human Disturbance.

These populations are increasingly rare as humans are ubiquitous and affect shape landscapes across most of the world. They include wolf populations that thrive in northern Canada where human disturbance is negligible (77). Similarly, the domestic tomato relative Solanum lycopersicoides does not tolerate agricultural disturbances and is now found only at undisturbed higher altitudes (78). The dwarf stag beetle (Sclerostomulus nitidu) requires late-stage dead logs that only occur in the absence of human disturbance and is now only found on one mountain (79).

Category 2. Human Avoider Populations Thrive Where Human Disturbance Is Rare.

For example, the sphagnum moss Sphagnum austinni tolerated occasional human disturbance in the early Iron Age when used as a fuel source (80), but dwindled when agricultural activity and maintenance burning increased (81). Populations within a species can span a range of human relationships. Some African wildcat (Felis lybica) populations are human avoiders and thrive on ranches with low human population density (82) while others are obligate recluses and live in environments devoid of humans (83).

Category 3. Human Tolerant Populations Thrive in Areas with Occasional Human Disturbance.

This includes animals who live near humans but emerge when humans are less active, and plants that thrive in areas with intermittent human disturbance. For example, coyote (Canis latrans) populations tend to spend daylight in areas with lower human density but move through areas of higher density at night (84). Individual coyotes will exploit food sources that put them in close proximity with humans, such as eating pet food or predating pets, if natural food sources are less available, but this results in poor health and increased risk of culling and is rare (85, 86). The plant woodbine (Lonicera periclymenum) thrives in hedgerows and forests with occasional human activity, but not in recently or heavily managed forests (87, 88).

Category 4. Human Exploiter Populations Are Synanthropic Opportunists.

These populations thrive in environments with ongoing human disturbance. However, if the anthropogenic niche disappeared, they would persist. For example, stinging nettles (Urtica dioica) are self-sustaining in undisturbed areas with high-nitrogen soil, but thrive in the increased nitrogen of human-disturbed soil (89). The Asian subterranean termite (Coptotermes gestroi) is self-sustaining in old-growth forests but also thrives using human buildings as nests (90). Red foxes (Vulpes vulpes) can sustain their populations in nonanthropogenic environments. By moving closer to humans, they access new food sources and partition their ranges from less human-tolerant coyotes (91, 92) and grow to higher population densities (93).

Category 5. Obligate Synanthrope Populations (Domestic) Require Ongoing Human Disturbance.

If the anthropogenic niche suddenly disappeared, these populations would be out-competed, predated, or simply unable to acquire the resources required to sustain their population. Lactic acid bacterial strains (Streptococcus thermophilus) required for fermented milk products have lost genes necessary to ferment nondairy carbohydrates (94). The common bed bug (Cimex lectularius) is both parasite and likely obligate synanthrope because both bat- and human-associated bed bug populations are found only in human structures (95).

We do not count organisms that require human bodies as domestic. For example, body lice (Pediculus humanus humanus) require human clothes and are domestic, but head lice (Pediculus humanus capitis) require human hair and are not (96).

Domestic Populations Are Not More or Less Domestic.

Once a population is domestic, subsequent selection does not represent an ongoing process of domestication. A population that already requires an anthropogenic niche cannot evolve to become “more obligate.” Artificial selection in captive breeding programs can produce populations that are no longer self-sustaining and thus cannot be independently assessed on the domestication spectrum. Broiler chickens selected for growth rates and meat yield have impaired reproduction without intensive feed management (97).

The Spectrum Clarifies Exceptions

Domestication is distinct within an evolutionary context only because humans are one of the species involved. It has value as a term because it can help us understand how we affect the life around us, and how this has shaped both human culture and the wider world. A less prescriptive definition free of assumptions of intent, control, or utility accommodates situations that were previously awkward exceptions.

Ambiguous Terminology.

Under this definition, domestication status is independent of whether or not a population is perceived as wanted, thereby avoiding ambiguity introduced by conflating domestic with “desirable.” For instance, even when intentionally grown crops and unwanted weeds are from the same population, only the crops have been described as domestic (16, 35). Rye is cultivated as a major crop but also classified as a noxious weed (98). Similarly, animals we want or control are called domestic but unwanted populations are described as human commensals or anthrodependent [e.g., house sparrows, body lice, and brown rats (99)] (Fig. 1B).

Similarly, domestication status does not differ between domestic pets and free-living animals from the same population. Free-living domestic animals, including those poorly socialized to humans, are dependent on an anthropogenic niche but are often erroneously described as feral (e.g., “feral” barn cats). Feralization is an evolutionary process by which a domestic population evolves to no longer require an anthropogenic niche (100). For example, the dingoes of Australia are descended from domestic dogs that evolved to survive outside of an anthropogenic niche (101) (Fig. 2).

Adaptation to Captivity Is Not Domestication.

Domestication and adaptation to captivity are not synonymous, even though the two processes are indistinguishable when domestication is predicated on intentionality and control. Under our definition, a domestic population is one that is self-sustaining in an anthropogenic niche. In contrast, captive, cultivated, or cultured populations require ongoing and direct human care and are rarely self-sustaining. Captive populations are often sink populations that require the continual introduction of individuals from the noncaptive population (102). Captive environments lack the complex interactions and selective pressures of noncaptive anthropogenic environments such as cities (103).

Adaptation to captivity is distinct from domestication. Subpopulations from across the domestication spectrum can be maintained in captivity if human caretakers create an artificial environment sufficiently similar to their native habitat. For example, human-tolerant woodbine (Lonicera periclymenum) will not grow spontaneously in highly human-disturbed areas like urban gardens, but can be grown as a cultivar (104). More human-tolerant populations may be easier to maintain in captivity because human caretakers are better able to replicate an anthropogenic niche. However, even populations that are human exploiters may not tolerate captivity if key components of their environment are missing. The achlorophyllous ghost orchid (Epipogium roseum) grows on the edges of gardens and in compost piles (105) but was difficult to first cultivate because it depends on a fungal symbiote (106).

While selection in a captive population can favor traits that are advantageous in a noncaptive anthropogenic niche, it often does not. For example, by favoring deformed skeletal morphologies, dog breeders created subpopulations that rarely produce healthy pups without veterinary intervention (107). Plant breeders, by selecting for a more palatable animal feed, created lupins that are less protected from herbivorous insects (108).

Thus, when we seek to protect species at risk of extinction by bringing populations into captivity, we do not “domesticate” them. Their breeding is often carefully controlled to retain genomic diversity and to reduce the effects of selection (109). Some adaptation is often unavoidable but does not necessarily result in populations better adapted to an anthropogenic niche. Fur-farmed foxes breed in captivity (61), but fur farm escapees can still thrive in the wild (110). Captivity can result in a reduced fear of humans (whether genetic or environmental) that can prove fatal. Reintroduced captive-born carnivores are more likely than wild-born individuals to die through human interactions when released (111).

Most Major Laboratory Models Were Already Human-Tolerant.

The individuals used to establish nearly all major laboratory models (Table 1) came from populations that already exploited or required an anthropogenic niche (Fig. 1 A, C, and D) and thus may have been easier to maintain in captivity. For example, fruit flies were collected using fruit left on window sills (112) and sand fleas (Parhyale hawaiensis) were sourced from the Shedd Aquarium’s filtration system (113). A common strain of laboratory rats is descended from rats captured at an Oscar Mayer company dump (114). Even the “wild” mice crossed into the laboratory populations were from commensal populations living in, for example, a pigeon coop (115). In contrast, populations that thrive further from human disturbance are often challenging lab models. For example, the most successful attempt to create an octopus model [Octopus chierchiae; populations likely range from human avoiders to human tolerant (116)] lasted just three generations, with an 85% fatality rate due to escapes and inadequate diet and water quality (116). Even when a population can be maintained in captivity, the physiological effects may affect outcomes (117). For example, the brains of captive shrews [Sorex araneus; likely human avoiders (118)] have changes in gene expression linked to neurodegeneration (119).

Table 1.

The individuals used to establish nearly all major laboratory model organisms came from populations that were either human exploiters or domestic (SI Appendix)

Name Source Category
Dog Breeders and dog pounds Domestic
Fruit fly Flies attracted to fruit on window sills Domestic
Maize Crop varieties Domestic
Mouse Fancy mouse breeders and caught commensal mice (e.g., from pigeon coop) Domestic
Rat Fancy rat breeders and caught commensal rats (e.g., Oscar-Mayer dump) Domestic
Nematode (C. elegans) Garden soil and from mushroom compost Human exploiter
Sand fleas (P. hawaiensis) Filters at the Shedd aquarium Human exploiter to domestic
Yeast (S. cerevisiae) Commercial sources, rotting figs, and rotting bananas Human tolerant to domestic
South African clawed frog (Xenopus) Unknown commercial distributor in South Africa Human tolerant to human exploiter
Zebrafish Pet store in Oregon selling ornamental fish Human tolerant to human exploiter
Arabidopsis Collected by Laibach. Little information on where Mostly human exploiters; potentially any

Populations that Cannot be Domesticated.

Distinguishing domestication from tolerance of captivity dispels the popular belief that some species like zebras are resistant to domestication (120). This idea is based primarily on short-lived, poorly executed captive breeding attempts that failed within one or two generations, and thus never tested domestication, which is an evolutionary process that unfolds over many generations. For example, the largest effort to intentionally domesticate zebras (Equus quagga) failed when the vast majority died within a year without breeding (121). Rather than proving resistance to domestication, this experiment simply demonstrated that zebras, as obligate recluses (122), are harder to manage in captivity than horses. In contrast to conventional wisdom, we classify horses as human exploiters and not domestic because horse populations are self-sustaining outside of the anthropogenic niche (123, 124).

Domestication Through Translocation and Other Changes in Environment.

Like any evolutionary process, domestication is an interaction between genetics and environment. Thus, the categorization of a population can change because its environment changes, as happens with human-mediated translocations. In their original Eurasian habitats, house cats (Felis catus) are domestic: we found no examples of self-sustaining cat populations outside of an anthropogenic niche. However, this changes when cats are translocated to places without their natural competitors. Australia has cat populations that are self-sustaining even in remote areas like the Gibson desert, albeit at much lower densities (125). Environmental change can also shift populations to obligate synanthropy. For example, most polecats (Mustela putorius) in farms and garbage dumps are human exploiters who take advantage of a high prey density in these environments but do not require it (126). In the coldest parts of their range, however, polecats require access to warm human structures in the winter to survive (127).

A population could shift to domestic if their nonanthropogenic niche is destroyed by human activity. Western honey bee (Apis mellifera) populations use both large hollow trees and human structures for their nests (128) but would become obligate synanthropes if their native habitat were destroyed and they were unable to use a different nonanthropogenic niche. Similarly, gourds and squashes adapted to the disturbance of ancient megafauna were rescued after the last ice age by anthropogenic disturbance (129).

Exploring the Relationship of Other Taxa with Humans Based on Archaeological Context.

Circumstances in which different populations are found over time in relation to an anthropogenic niche can provide insights into how and why populations went through the process of domestication. For example, house mice (Mus musculus) displaced Macedonian mice (Mus macedonicus) when humans moved to more permanent settlements at the beginning of the Natufian period, and this reversed when humans became more mobile again (130), suggesting the house mouse population was domestic (required an anthropogenic niche). Thus, the archaeological context itself provides information regarding the population’s relationship with the anthropogenic niche.

Conclusion

Our new panspecies definition for domestication is grounded in evolutionary biology and resolves persistent differences in how domestication is defined. This new framing thus enables interdisciplinary investigations of the underlying biological and cultural processes that led to the emergence of domestic populations. It avoids prior assumptions about how and why domestication happens and obviates the requirement for control, utility, and human intentionality. It also accommodates the potential for domestication to vary between populations within a species. We clarify that domestication is a symbiotic relationship distinctive only because one of the two parties is human and is otherwise not fundamentally different from any other form of evolution. In other words, domestication is not an example of human exceptionalism but an aspect of evolution that is particularly relevant to our species.

This perspective allows us to ask and answer new questions about our relationship with other species in the past and future. Humans are reshaping ecosystems globally and millions of other species are being forced to adapt (131). Thus, anthropogenic habitats are model systems for investigating adaptation to rapid environmental change (132, 133). However, key questions remain. Why do some taxa adapt more readily to anthropogenic environments than others? Are less human-tolerant taxa unable to adapt, or simply adapting more slowly? Do wild taxa share traits that hinder adaptation? Likewise, do domestic populations share traits that facilitate it? Understanding the interactions between human and nonhuman species will help us develop strategies to mitigate our impact and protect irreplaceable biodiversity. It also raises the uncomfortable prospect that, if domestication is adaptation to an anthropogenic world, we may face a future devoid of wild populations.

Supplementary Material

Appendix 01 (PDF)

pnas.2413207122.sapp.pdf (813.9KB, pdf)

Acknowledgments

We thank Benjamin Arbuckle, Robin Bendry, Amy Bogaard, Thomas Cucchi, Rachel Daniels, Tim Denham, Keith Dobney, Carlos Driscoll, Dorian Fuller, Katie Hinde, Kristin Laidre, Fiona Marshall, Lynn Martin, Lisa Moses, Natalie Mueller, Magnus Norburg, Joris Peters, Dolores Piperno, Michael Purugganan, David Reich, Peter Rowley-Conwy, Oliver Ryder, Johanna Schmitt, Naomi Sykes, Jean-Denis Vigne, Matt Webster, Mindy Zeder, and the Boston Evolutionary Genomics Supergroup community for insightful discussions. K.L. thanks Raymond Coppinger for many hours of discussion that inspired these ideas.

Author contributions

K.A.L., G.L., R.G.A., and E.K.K. wrote the paper.

Competing interests

The authors declare no competing interest.

Footnotes

This article is a PNAS Direct Submission.

Data, Materials, and Software Availability

There are no data underlying this work.

Supporting Information

References

  • 1.Larson G., et al. , Current perspectives and the future of domestication studies. Proc. Natl. Acad. Sci. U.S.A. 111, 6139–6146 (2014). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Ramankutty N., Evan A. T., Monfreda C., Foley J. A., Farming the planet: 1. Geographic distribution of global agricultural lands in the year 2000. Global Biogeochem. Cycles 22, GB1003 (2008). [Google Scholar]
  • 3.Greenspoon L., et al. , The global biomass of wild mammals. Proc. Natl. Acad. Sci. U.S.A. 120, e2204892120 (2023). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Grossi G., Goglio P., Vitali A., Williams A. G., Livestock and climate change: Impact of livestock on climate and mitigation strategies. Anim. Front. 9, 69–76 (2019). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Larson G., Burger J., A population genetics view of animal domestication. Trends Genet. 29, 197–205 (2013). [DOI] [PubMed] [Google Scholar]
  • 6.Darwin C., On the Origin of Species by Means of Natural Selection, or, the Preservation of Favoured Races in the Struggle for Life (J. Murray, 1859). [PMC free article] [PubMed] [Google Scholar]
  • 7.Arbuckle B. S., Experimental Animal Domestication and Its Application to the Study of Animal Exploitation in Prehistory (Oxbow Books, 2005). [Google Scholar]
  • 8.Driscoll C. A., Macdonald D. W., O’Brien S. J., From wild animals to domestic pets, an evolutionary view of domestication. Proc. Natl. Acad. Sci. U.S.A. 106, 9971–9978 (2009). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Gentry A., Clutton-Brock J., Groves C. P., The naming of wild animal species and their domestic derivatives. J. Archaeol. Sci. 31, 645–651 (2004). [Google Scholar]
  • 10.Bidau C. J., D’Elıa G., Domestication through the centuries: Darwin’s ideas and Dmitry Belyaev’s long-term experiment in silver foxes. Gayana 73, 55–72 (2009). [Google Scholar]
  • 11.Price E. O., Behavioral aspects of animal domestication. Q. Rev. Biol. 59, 1–32 (1984). [Google Scholar]
  • 12.Vigne J.-D., The origins of animal domestication and husbandry: A major change in the history of humanity and the biosphere. C. R. Biol. 334, 171–181 (2011). [DOI] [PubMed] [Google Scholar]
  • 13.Zeder M. A., The domestication of animals. J. Anthropol. Res. 68, 161–190 (2012). [Google Scholar]
  • 14.De Wet J. M. J., Harlan J. R., Weeds and domesticates: Evolution in the man-made habitat. Econ. Bot. 29, 99–108 (1975). [Google Scholar]
  • 15.Purugganan M. D., Evolutionary insights into the nature of plant domestication. Curr. Biol. 29, R705–R714 (2019). [DOI] [PubMed] [Google Scholar]
  • 16.Weed Science Society of America, Composite List of Weeds (Weed Science Society of America, 2023). [Google Scholar]
  • 17.Lowney M. S., Schoenfeld P., Haglan W., Witmer G. W., “Overview of impacts of feral and introduced ungulates on the environment in the Eastern United States and Caribbean” in Wildlife Damage Management Conference (2005).
  • 18.Junqueira A. N. N., Galera P. D., Evaluation of population management based on trap-neuter-return and trap-neuter-adoption practices in a free-roaming cat colony in the federal district, Brazil. Animals (Basel) 14, 2478 (2024). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Ditchkoff S. S., et al. , Reproduction in a population of wild pigs (Sus scrofa) subjected to lethal control. J. Wildl. Manage. 76, 1235–1240 (2012). [Google Scholar]
  • 20.Belsare A., Vanak A. T., Modelling the challenges of managing free-ranging dog populations. Sci. Rep. 10, 18874 (2020). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21.Pimentel D., Lach L., Zuniga R., Morrison D., Environmental and economic costs of nonindigenous species in the United States. BioScience 50, 53–65 (2000). [Google Scholar]
  • 22.Lord K., Feinstein M., Smith B., Coppinger R., Variation in reproductive traits of members of the genus Canis with special attention to the domestic dog (Canis familiaris). Behav. Processes 92, 131–142 (2013). [DOI] [PubMed] [Google Scholar]
  • 23.Gould S. J., The exaptive excellence of spandrels as a term and prototype. Proc. Natl. Acad. Sci. U.S.A. 94, 10750–10755 (1997). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Peters J., et al. , The biocultural origins and dispersal of domestic chickens. Proc. Natl. Acad. Sci. U.S.A. 119, e2121978119 (2022). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Best J., et al. , Redefining the timing and circumstances of the chicken’s introduction to Europe and North-West Africa. Antiquity 96, 868–882 (2022). [Google Scholar]
  • 26.Allaby R. G., Stevens C. J., Fuller D. Q., A novel cost framework reveals evidence for competitive selection in the evolution of complex traits during plant domestication. J. Theor. Biol. 537, 111004 (2022). [DOI] [PubMed] [Google Scholar]
  • 27.Zeder M. A., “Pathways to animal domestication” in Biodiversity in Agriculture: Domestication, Evolution, and Sustainability, Gepts P., et al., Eds. (Cambridge University Press, 2012), pp. 227–259. [Google Scholar]
  • 28.Fuller D. Q., Denham T., Allaby R., Plant domestication and agricultural ecologies. Curr. Biol. 33, R636–R649 (2023). [DOI] [PubMed] [Google Scholar]
  • 29.Allaby R. G., Stevens C. J., Kistler L., Fuller D. Q., Emerging evidence of plant domestication as a landscape-level process. Trends Ecol. Evol. 37, 268–279 (2022). [DOI] [PubMed] [Google Scholar]
  • 30.Rindos D., The Origins of Agriculture: An Evolutionary Perspective (Academic Press, 1984). [Google Scholar]
  • 31.Harlan J. R., deWet J. M. J., Some thoughts about weeds. Econ. Bot. 19, 16–24 (1965). [Google Scholar]
  • 32.Purugganan M. D., What is domestication? Trends Ecol. Evol. 37, 663–671 (2022). [DOI] [PubMed] [Google Scholar]
  • 33.Milla R., Osborne C. P., Turcotte M. M., Violle C., Plant domestication through an ecological lens. Trends Ecol. Evol. 30, 463–469 (2015). [DOI] [PubMed] [Google Scholar]
  • 34.Zeder M. A., Core questions in domestication research. Proc. Natl. Acad. Sci. U.S.A. 112, 3191–3198 (2015). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 35.Leigh E. G. Jr., The evolution of mutualism: The evolution of mutualism. J. Evol. Biol. 23, 2507–2528 (2010). [DOI] [PubMed] [Google Scholar]
  • 36.Larsen C. S., Biological changes in human populations with agriculture. Annu. Rev. Anthropol. 24, 185–213 (1995). [Google Scholar]
  • 37.Pearce-Duvet J. M. C., The origin of human pathogens: Evaluating the role of agriculture and domestic animals in the evolution of human disease. Biol. Rev. Camb. Philos. Soc. 81, 369–382 (2006). [DOI] [PubMed] [Google Scholar]
  • 38.Düx A., et al. , Measles virus and rinderpest virus divergence dated to the sixth century BCE. Science 368, 1367–1370 (2020). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 39.Xia S., Gullickson C. C., Metcalf C. J. E., Grenfell B. T., Mina M. J., Assessing the effects of measles virus infections on childhood infectious disease mortality in Brazil. J. Infect. Dis. 227, 133–140 (2022). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 40.Assaad F., Measles: Summary of worldwide impact. Clin. Infect. Dis. 5, 452–459 (1983). [DOI] [PubMed] [Google Scholar]
  • 41.Janzen D. H., When is it coevolution? Evolution 34, 611–612 (1980). [DOI] [PubMed] [Google Scholar]
  • 42.Ségurel L., Bon C., On the evolution of lactase persistence in humans. Annu. Rev. Genomics Hum. Genet. 18, 297–319 (2017). [DOI] [PubMed] [Google Scholar]
  • 43.Moorjani P., et al. , A genetic method for dating ancient genomes provides a direct estimate of human generation interval in the last 45,000 years. Proc. Natl. Acad. Sci. U.S.A. 113, 5652–5657 (2016). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 44.Inchley C. E., et al. , Selective sweep on human amylase genes postdates the split with Neanderthals. Sci. Rep. 6, 37198 (2016). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 45.Bolognini D., et al. , Recurrent evolution and selection shape structural diversity at the amylase locus. Nature 634, 617–625 (2024). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 46.Perry G. H., et al. , Diet and the evolution of human amylase gene copy number variation. Nat. Genet. 39, 1256–1260 (2007). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 47.Rindos D., et al. , Symbiosis, instability, and the origins and spread of agriculture: A new model [and comments and reply]. Curr. Anthropol. 21, 751–772 (1980). [Google Scholar]
  • 48.Johnson M. S., et al. , Phenotypic and molecular evolution across 10,000 generations in laboratory budding yeast populations. eLife 10, e63910 (2021). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 49.Allaby R., “Origins of plant exploitation in near Oceania: A review” in Population Genetics, Linguistics, and Culture History in the Southwest Pacific, Friedlaender J. S., Ed. (Oxford University Press, 2007), pp. 181–198. [Google Scholar]
  • 50.Frantz L. A. F., et al. , Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe. Proc. Natl. Acad. Sci. U.S.A. 116, 17231–17238 (2019). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 51.Bosse M., et al. , Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression. Nat. Commun. 5, 4392 (2014). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 52.Aouizerat T., et al. , Isolation and characterization of live yeast cells from ancient vessels as a tool in bio-archaeology. mBio 10, e00388-19 (2019). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 53.Bogaard A., et al. , Reconsidering domestication from a process archaeology perspective. World Archaeol. 53, 56–77 (2021). [Google Scholar]
  • 54.Perri A. R., et al. , Dog domestication and the dual dispersal of people and dogs into the Americas. Proc. Natl. Acad. Sci. U.S.A. 118, e2010083118 (2021). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 55.Lord K. A., Larson G., Coppinger R. P., Karlsson E. K., The history of farm foxes undermines the animal domestication syndrome. Trends Ecol. Evol. 35, 125–136 (2020). [DOI] [PubMed] [Google Scholar]
  • 56.Sánchez-Villagra M. R., Geiger M., Schneider R. A., The taming of the neural crest: A developmental perspective on the origins of morphological covariation in domesticated mammals. R. Soc. Open Sci. 3, 160107 (2016). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 57.Higgs E. S., Jarman M. R., The origins of agriculture: A reconsideration. Antiquity 43, 31–41 (1969). [Google Scholar]
  • 58.Lord K. A., Larson G., Karlsson E. K., Brain size does not rescue domestication syndrome. Trends Ecol. Evol. 35, P1061–P1062 (2020). [DOI] [PubMed] [Google Scholar]
  • 59.Evin A., et al. , Phenotype and animal domestication: A study of dental variation between domestic, wild, captive, hybrid and insular Sus scrofa. BMC Evol. Biol. 15, 6 (2015). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 60.Janssens L., Perri A., Crombé P., Van Dongen S., Lawler D., An evaluation of classical morphologic and morphometric parameters reported to distinguish wolves and dogs. J. Arch. Sci.: Rep. 23, 501–533 (2019). [Google Scholar]
  • 61.Zeder M. A., A metrical analysis of a collection of modern goats (Capra hircus aegargus and C. h. hircus) from Iran and Iraq: Implications for the study of caprine domestication. J. Archaeol. Sci. 28, 61–79 (2001). [Google Scholar]
  • 62.Price E., The effect of reproductive performance on the domestication of the Prairie Deermouse, Peromyscus maniculatus bairdii. Evolution 21, 762–770 (1967). [DOI] [PubMed] [Google Scholar]
  • 63.Moyon W. A., Chara E., indigenous fishing methods of the Moyon Tribe of Manipur (India) and Myanmar. S&S 3, 54–67 (2021). [Google Scholar]
  • 64.Weldenegodguad M., et al. , Adipose gene expression profiles reveal insights into the adaptation of northern Eurasian semi-domestic reindeer (Rangifer tarandus). Commun. Biol. 4, 1170 (2021). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 65.Mysterud A., Still walking on the wild side? Management actions as steps towards “semi-domestication” of hunted ungulates. J. Appl. Ecol. 47, 920–925 (2010). [Google Scholar]
  • 66.Rosen B., Reidentified animals in the “Orpheus Mosaic” from Jerusalem. Israel Explor. J. 34, 182–183 (1984). [Google Scholar]
  • 67.Gering E., Incorvaia D., Henriksen R., Wright D., Getty T., Maladaptation in feral and domesticated animals. Evol. Appl. 12, 1274–1286 (2019). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 68.Gross M., Shopping with hunter-gatherers. Curr. Biol. 32, R596–R599 (2022). [Google Scholar]
  • 69.Hare B., Wobber V., Wrangham R., The self-domestication hypothesis: Evolution of bonobo psychology is due to selection against aggression. Anim. Behav. 83, 573–585 (2012). [Google Scholar]
  • 70.Provenza F. D., et al. , The value to herbivores of plant physical and chemical diversity in time and space. Crop Sci. 47, 382–398 (2007). [Google Scholar]
  • 71.Brüne M., On human self-domestication, psychiatry, and eugenics. Philos. Ethics Hum. Med. 2, 21 (2007). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 72.Dornelas M., Disturbance and change in biodiversity. Philos. Trans. R. Soc. Lond. B, Biol. Sci. 365, 3719–3727 (2010). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 73.Vaughan D. A., Balázs E., Heslop-Harrison J. S., From crop domestication to super-domestication. Ann. Bot. 100, 893–901 (2007). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 74.Liberg O., Sandell M., “Spatial organisation and reproductive tactics in the domestic cat and other felids” in The Domestic Cat: The Biology of Its Behaviour, Turner D. C., Bateson P. P. G., Eds. (Cambridge University Press, 2000), pp. 119–147. [Google Scholar]
  • 75.Arim M., Abades S. R., Neill P. E., Lima M., Marquet P. A., Spread dynamics of invasive species. Proc. Natl. Acad. Sci. U.S.A. 103, 374–378 (2006). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 76.Ferreira J. P., Leitão I., Santos-Reis M., Revilla E., Human-related factors regulate the spatial ecology of domestic cats in sensitive areas for conservation. PLoS ONE 6, e25970 (2011). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 77.Ellis E. C., Ramankutty N., Putting people in the map: Anthropogenic biomes of the world. Front. Ecol. Environ. 6, 439–447 (2008). [Google Scholar]
  • 78.Chetelat R. T., Pertuzé R. A., Faúndez L., Graham E. B., Jones C. M., Distribution, ecology and reproductive biology of wild tomatoes and related nightshades from the Atacama Desert region of northern Chile. Euphytica 167, 77–93 (2009). [Google Scholar]
  • 79.Barahona-Segovia R. M., Crespin S. J., Pizarro-Sobarzo F., Brito-Rozas E., Tobar-González M., Revealing suitable micro- and macrohabitat characteristics to save the critically endangered Chilean saproxylic beetle Sclerostomulus nitidus (Coleoptera: Lucanidae). Insect Conserv. Divers. 17, 155–162 (2023), 10.1111/icad.12690. [DOI] [Google Scholar]
  • 80.Swindles G. T., et al. , Resilience of peatland ecosystem services over millennial timescales: Evidence from a degraded British bog. J. Ecol. 104, 621–636 (2016). [Google Scholar]
  • 81.Swindles G. T., et al. , The long-term fate of permafrost peatlands under rapid climate warming. Sci. Rep. 5, 17951 (2015). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 82.Stein A. B., Fuller T. K., Marker L. L., Opportunistic use of camera traps to assess habitat-specific mammal and bird diversity in northcentral Namibia. Biodivers. Conserv. 17, 3579–3587 (2008). [Google Scholar]
  • 83.Schuette P., Wagner A. P., Wagner M. E., Creel S., Occupancy patterns and niche partitioning within a diverse carnivore community exposed to anthropogenic pressures. Biol. Conserv. 158, 301–312 (2013). [Google Scholar]
  • 84.Grubbs S. E., Krausman P. R., Use of urban landscape by coyotes. Southwest. Nat. 54, 1–12 (2009). [Google Scholar]
  • 85.Larson R. N., Brown J. L., Karels T., Riley S. P. D., Effects of urbanization on resource use and individual specialization in coyotes (Canis latrans) in southern California. PLoS ONE 15, e0228881 (2020). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 86.Newsome S. D., Garbe H. M., Wilson E. C., Gehrt S. D., Individual variation in anthropogenic resource use in an urban carnivore. Oecologia 178, 115–128 (2015). [DOI] [PubMed] [Google Scholar]
  • 87.Deckers B., Hermy M., Muys B., Factors affecting plant species composition of hedgerows: Relative importance and hierarchy. Acta Oecol. 26, 23–37 (2004). [Google Scholar]
  • 88.Decocq G., et al. , Silviculture-driven vegetation change in a European temperate deciduous forest. Ann. For. Sci. 62, 313–323 (2005). [Google Scholar]
  • 89.Taylor K., Biological flora of the British Isles: Urtica dioica L. J. Ecol. 97, 1436–1458 (2009). [Google Scholar]
  • 90.Zhang M., Evans T. A., Determining urban exploiter status of a termite using genetic analysis. Urban Ecosyst. 20, 535–545 (2017). [Google Scholar]
  • 91.Gehrt S. D., Anchor C., White L. A., Home range and landscape use of coyotes in a metropolitan landscape: Conflict or coexistence? J. Mammal. 90, 1045–1057 (2009). [Google Scholar]
  • 92.Mueller M. A., Drake D., Allen M. L., Coexistence of coyotes (Canis latrans) and red foxes (Vulpes vulpes) in an urban landscape. PLoS ONE 13, e0190971 (2018). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 93.Bateman P. W., Fleming P. A., Big city life: Carnivores in urban environments. J. Zool. 287, 1–23 (2012). [Google Scholar]
  • 94.Goh Y. J., Goin C., O’Flaherty S., Altermann E., Hutkins R., Specialized adaptation of a lactic acid bacterium to the milk environment: The comparative genomics of Streptococcus thermophilus LMD-9. Microb. Cell Fact. 10, S22 (2011). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 95.Ghazarayan A., Hayrpetyan T., Natradze I., Roth S., First records of bat-associated Cimex lectularius (Cimicidae, Heteroptera) for Armenia and Georgia. Caucasiana 2, 137–142 (2023). [Google Scholar]
  • 96.Kittler R., Kayser M., Stoneking M., Molecular evolution of Pediculus humanus and the origin of clothing. Curr. Biol. 14, 2309 (2004). [DOI] [PubMed] [Google Scholar]
  • 97.Hartcher K. M., Lum H. K., Genetic selection of broilers and welfare consequences: A review. Worlds Poult. Sci. J. 76, 154–167 (2020). [Google Scholar]
  • 98.White A. D., Lyon D. J., Mallory-Smith C., Medlin C. R., Yenish J. P., Feral Rye (Secale cereale) in agricultural production systems. Weed Technol. 20, 815–823 (2006). [Google Scholar]
  • 99.Ravinet M., et al. , Signatures of human-commensalism in the house sparrow genome. Proc. Biol. Sci. 285, 20181246 (2018). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 100.Gering E., et al. , Getting back to nature: Feralization in animals and plants. Trends Ecol. Evol. 34, 1137–1151 (2019). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 101.Newsome T. M., Ballard G.-A., Crowther M. S., Fleming P. J. S., Dickman C. R., Dietary niche overlap of free-roaming dingoes and domestic dogs: The role of human-provided food. J. Mammal. 95, 392–403 (2014). [Google Scholar]
  • 102.Lacy R. C., Achieving true sustainability of zoo populations. Zoo Biol. 32, 19–26 (2013). [DOI] [PubMed] [Google Scholar]
  • 103.Kowarik I., Novel urban ecosystems, biodiversity, and conservation. Environ. Pollut. 159, 1974–1983 (2011). [DOI] [PubMed] [Google Scholar]
  • 104.Frey D., Moretti M., A comprehensive dataset on cultivated and spontaneously growing vascular plants in urban gardens. Data Brief 25, 103982 (2019). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 105.Tom (Botany Boy), Southern Japan’s ghost orchid, Epipogium roseum (2011), https://botanyboy.org/southern-japans-ghost-orchid-epipogium-roseum/. Accessed 20 January 2024.
  • 106.Yagame T., Yamato M., Mii M., Suzuki A., Iwase K., Developmental processes of achlorophyllous orchid, Epipogium roseum: From seed germination to flowering under symbiotic cultivation with mycorrhizal fungus. J. Plant Res. 120, 229–236 (2007). [DOI] [PubMed] [Google Scholar]
  • 107.Evans K. M., Adams V. J., Proportion of litters of purebred dogs born by caesarean section. J. Small Anim. Pract. 51, 113–118 (2010). [DOI] [PubMed] [Google Scholar]
  • 108.Ku Y.-S., et al. , The effects of domestication on secondary metabolite composition in legumes. Front. Genet. 11, 581357 (2020). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 109.Willoughby J. R., Ivy J. A., Lacy R. C., Doyle J. M., DeWoody J. A., Inbreeding and selection shape genomic diversity in captive populations: Implications for the conservation of endangered species. PLoS ONE 12, e0175996 (2017). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 110.Lewis J. C., Sallee K. L., Golightly R. T., Introduction and range expansion of nonnative red foxes (Vulpes vulpes) in California. Am. Midland Nat. 142, 372–381 (1999). [Google Scholar]
  • 111.Jule K. R., Leaver L. A., Lea S. E. G., The effects of captive experience on reintroduction survival in carnivores: A review and analysis. Biol. Conserv. 141, 355–363 (2008). [Google Scholar]
  • 112.Allen G. E., The introduction of Drosophila into the study of heredity and evolution: 1900–1910. Isis 66, 322–333 (1975). [DOI] [PubMed] [Google Scholar]
  • 113.Paris M., Wolff C., Patel N. H., Averof M., The crustacean model Parhyale hawaiensis. Curr. Top. Dev. Biol. 147, 199–230 (2022). [DOI] [PubMed] [Google Scholar]
  • 114.Foster H. L., The history of commercial production of laboratory rodents. Lab. Anim. Sci. 30, 793–798 (1980). [PubMed] [Google Scholar]
  • 115.Hedrich H., The Laboratory Mouse (Academic Press, 2004). [Google Scholar]
  • 116.Grearson A. G., et al. , The lesser Pacific striped octopus, Octopus chierchiae: An emerging laboratory model. Front. Mar. Sci. 8, 753483 (2021). [Google Scholar]
  • 117.Mason G., et al. , Plastic animals in cages: Behavioural flexibility and responses to captivity. Anim. Behav. 85, 1113–1126 (2013). [Google Scholar]
  • 118.Benedek A. M., Lazăr A., Cic N. V., Cocîrlea M. D., Sîrbu I., Effects of long-term habitat protection on Montane small mammals: Are Sorex araneus and S. minutus more sensitive than previously considered? Diversity (Basel) 14, 38 (2022). [Google Scholar]
  • 119.Bedoya Duque M. A., et al. , Gene expression comparisons between captive and wild shrew brains reveal captivity effects. Biol. Lett. 21, 20240478 (2025). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 120.Diamond J., Evolution, consequences and future of plant and animal domestication. Nature 418, 700–707 (2002). [DOI] [PubMed] [Google Scholar]
  • 121.Greiner A., Bio-engineering across empires: Mapping the global microhistory of zebra domestication in colonial east Africa. J. World Hist. 32, 127–159 (2021). [Google Scholar]
  • 122.M’soka J., Creel S., Becker M. S., Murdoch J. D., Ecological and anthropogenic effects on the density of migratory and resident ungulates in a human-inhabited protected area. Afr. J. Ecol. 55, 618–631 (2017). [Google Scholar]
  • 123.National Research Council, Division on Earth and Life Studies, Board on Agriculture and Natural Resources, Committee to Review the Bureau of Land Management Wild Horse and Burro Management Program. Using Science to Improve the BLM Wild Horse and Burro Program: A Way Forward (National Academies Press, 2013). [Google Scholar]
  • 124.McCrory W., Preliminary Conservation Assessment of the Rainshadow Wild Horse Ecosystem (Friends of Nemaiah Valley, 2002). [Google Scholar]
  • 125.Denny E. A., Dickman C. R., Review of Cat Ecology and Management Strategies in Australia (Invasive Animals Cooperative Research Centre, 2010). [Google Scholar]
  • 126.Blandford P. R. S., Biology of the Polecat Mustela putorius: A literature review. Mamm. Rev. 17, 155–198 (1987). [Google Scholar]
  • 127.Weber D., The ecological significance of resting sites and the seasonal habitat change in polecats (Mustela putorius). J. Zool. 217, 629–638 (1989). [Google Scholar]
  • 128.Saunders M. E., Goodwin E. K., Santos K. C., Sonter C. A., Rader R., Cavity occupancy by wild honey bees: Need for evidence of ecological impacts. Front. Ecol. Environ. 19, 349–354 (2021). [Google Scholar]
  • 129.Kistler L., et al. , Gourds and squashes (Cucurbita spp.) adapted to megafaunal extinction and ecological anachronism through domestication. Proc. Natl. Acad. Sci. U.S.A. 112, 15107–15112 (2015). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 130.Weissbrod L., et al. , Origins of house mice in ecological niches created by settled hunter-gatherers in the Levant 15,000 y ago. Proc. Natl. Acad. Sci. U.S.A. 114, 4099–4104 (2017). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 131.Barnosky A. D., et al. , Has the Earth’s sixth mass extinction already arrived? Nature 471, 51–57 (2011). [DOI] [PubMed] [Google Scholar]
  • 132.Schell C. J., Urban evolutionary ecology and the potential benefits of implementing genomics. J. Hered. 109, 138–151 (2018). [DOI] [PubMed] [Google Scholar]
  • 133.Shochat E., Warren P. S., Faeth S. H., McIntyre N. E., Hope D., From patterns to emerging processes in mechanistic urban ecology. Trends Ecol. Evol. 21, 186–191 (2006). [DOI] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Appendix 01 (PDF)

pnas.2413207122.sapp.pdf (813.9KB, pdf)

Data Availability Statement

There are no data underlying this work.


Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES