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. 1996 Oct;71(4):1973–1984. doi: 10.1016/S0006-3495(96)79395-5

Evidence that aspartate-85 has a higher pK(a) in all-trans than in 13-cisbacteriorhodopsin.

S P Balashov 1, E S Imasheva 1, R Govindjee 1, M Sheves 1, T G Ebrey 1
PMCID: PMC1233663  PMID: 8889171

Abstract

Three experimental observations indicate that the pK(a) of the purple-to-blue transition (the pK(a) of Asp-85) is higher for all-trans-bR(1) than for 13-cis-bR. First, light adaptation of bacteriorhodopsin (bR) at pHs near the pK(a) of Asp-85 causes an increase in the fraction of the blue membrane present. This transformation is reversible in the dark. Second, the pK(a) of the purple-to-blue transition in the dark is lower than that in the light-adapted bR (pK(a)(DA) = 3.5, pK(a)(LA) = 3.8 in 10 microM K(2)SO(4)). Third, the equilibrium fractions of 13-cis and all-trans isomers are pH dependent; the fraction of all-trans-bR increases upon formation of the blue membrane. Based on the conclusion that thermal all-trans <=> 13-cis isomerization occurs in the blue membrane rather than in the purple, we have developed a simple model that accounts for all three observations. From the fit of experimental data we estimate that the pK(a) of Asp-85 in 13-cis-bR is 0.5 +/- 0.1 pK(a) unit less than the pK(a) of all-trans-bR. Thus in 10 microM K(2)SO(4), pK(a)(c) = 3.3, whereas pK(a)(t) = 3.8.

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1973

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Balashov S. P., Govindjee R., Imasheva E. S., Misra S., Ebrey T. G., Feng Y., Crouch R. K., Menick D. R. The two pKa's of aspartate-85 and control of thermal isomerization and proton release in the arginine-82 to lysine mutant of bacteriorhodopsin. Biochemistry. 1995 Jul 11;34(27):8820–8834. doi: 10.1021/bi00027a034. [DOI] [PubMed] [Google Scholar]
  2. Balashov S. P., Govindjee R., Kono M., Imasheva E., Lukashev E., Ebrey T. G., Crouch R. K., Menick D. R., Feng Y. Effect of the arginine-82 to alanine mutation in bacteriorhodopsin on dark adaptation, proton release, and the photochemical cycle. Biochemistry. 1993 Oct 5;32(39):10331–10343. doi: 10.1021/bi00090a008. [DOI] [PubMed] [Google Scholar]
  3. Balashov S. P., Imasheva E. S., Govindjee R., Ebrey T. G. Titration of aspartate-85 in bacteriorhodopsin: what it says about chromophore isomerization and proton release. Biophys J. 1996 Jan;70(1):473–481. doi: 10.1016/S0006-3495(96)79591-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Becher B. M., Cassim J. Y. Improved isolation procedures for the purple membrane of Halobacterium halobium. Prep Biochem. 1975;5(2):161–178. doi: 10.1080/00327487508061568. [DOI] [PubMed] [Google Scholar]
  5. Birge R. R. Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin. Biochim Biophys Acta. 1990 Apr 26;1016(3):293–327. doi: 10.1016/0005-2728(90)90163-x. [DOI] [PubMed] [Google Scholar]
  6. Braiman M. S., Dioumaev A. K., Lewis J. R. A large photolysis-induced pKa increase of the chromophore counterion in bacteriorhodopsin: implications for ion transport mechanisms of retinal proteins. Biophys J. 1996 Feb;70(2):939–947. doi: 10.1016/S0006-3495(96)79637-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Brown L. S., Sasaki J., Kandori H., Maeda A., Needleman R., Lanyi J. K. Glutamic acid 204 is the terminal proton release group at the extracellular surface of bacteriorhodopsin. J Biol Chem. 1995 Nov 10;270(45):27122–27126. doi: 10.1074/jbc.270.45.27122. [DOI] [PubMed] [Google Scholar]
  8. Chang C. H., Chen J. G., Govindjee R., Ebrey T. Cation binding by bacteriorhodopsin. Proc Natl Acad Sci U S A. 1985 Jan;82(2):396–400. doi: 10.1073/pnas.82.2.396. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Chang C. H., Liu S. Y., Jonas R., Govindjee R. The pink membrane: the stable photoproduct of deionized purple membrane. Biophys J. 1987 Oct;52(4):617–623. doi: 10.1016/S0006-3495(87)83252-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Duñach M., Marti T., Khorana H. G., Rothschild K. J. Uv-visible spectroscopy of bacteriorhodopsin mutants: substitution of Arg-82, Asp-85, Tyr-185, and Asp-212 results in abnormal light-dark adaptation. Proc Natl Acad Sci U S A. 1990 Dec;87(24):9873–9877. doi: 10.1073/pnas.87.24.9873. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Fischer U., Oesterhelt D. Chromophore equilibria in bacteriorhodopsin. Biophys J. 1979 Nov;28(2):211–230. doi: 10.1016/S0006-3495(79)85172-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Fodor S. P., Ames J. B., Gebhard R., van den Berg E. M., Stoeckenius W., Lugtenburg J., Mathies R. A. Chromophore structure in bacteriorhodopsin's N intermediate: implications for the proton-pumping mechanism. Biochemistry. 1988 Sep 6;27(18):7097–7101. doi: 10.1021/bi00418a064. [DOI] [PubMed] [Google Scholar]
  13. Harbison G. S., Smith S. O., Pardoen J. A., Winkel C., Lugtenburg J., Herzfeld J., Mathies R., Griffin R. G. Dark-adapted bacteriorhodopsin contains 13-cis, 15-syn and all-trans, 15-anti retinal Schiff bases. Proc Natl Acad Sci U S A. 1984 Mar;81(6):1706–1709. doi: 10.1073/pnas.81.6.1706. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. He Y., Krebs M. P., Fischer W. B., Khorana H. G., Rothschild K. J. FTIR difference spectroscopy of the bacteriorhodopsin mutant Tyr-185-->Phe: detection of a stable O-like species and characterization of its photocycle at low temperature. Biochemistry. 1993 Mar 9;32(9):2282–2290. doi: 10.1021/bi00060a021. [DOI] [PubMed] [Google Scholar]
  15. Henderson R., Baldwin J. M., Ceska T. A., Zemlin F., Beckmann E., Downing K. H. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J Mol Biol. 1990 Jun 20;213(4):899–929. doi: 10.1016/S0022-2836(05)80271-2. [DOI] [PubMed] [Google Scholar]
  16. Ihara K., Amemiya T., Miyashita Y., Mukohata Y. Met-145 is a key residue in the dark adaptation of bacteriorhodopsin homologs. Biophys J. 1994 Sep;67(3):1187–1191. doi: 10.1016/S0006-3495(94)80587-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Jonas R., Ebrey T. G. Binding of a single divalent cation directly correlates with the blue-to-purple transition in bacteriorhodopsin. Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):149–153. doi: 10.1073/pnas.88.1.149. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Kimura Y., Ikegami A., Stoeckenius W. Salt and pH-dependent changes of the purple membrane absorption spectrum. Photochem Photobiol. 1984 Nov;40(5):641–646. doi: 10.1111/j.1751-1097.1984.tb05353.x. [DOI] [PubMed] [Google Scholar]
  19. Kouyama T., Bogomolni R. A., Stoeckenius W. Photoconversion from the light-adapted to the dark-adapted state of bacteriorhodopsin. Biophys J. 1985 Aug;48(2):201–208. doi: 10.1016/S0006-3495(85)83773-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Lanyi J. K. Proton translocation mechanism and energetics in the light-driven pump bacteriorhodopsin. Biochim Biophys Acta. 1993 Dec 7;1183(2):241–261. doi: 10.1016/0005-2728(93)90226-6. [DOI] [PubMed] [Google Scholar]
  21. Liu S. Y., Kono M., Ebrey T. G. Effect of pH buffer molecules on the light-induced currents from oriented purple membrane. Biophys J. 1991 Jul;60(1):204–216. doi: 10.1016/S0006-3495(91)82044-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Maeda A., Iwasa T., Yoshizawa T. Formation of 9-cis- and 11-cis-retinal pigments from bacteriorhodopsin by irradiating purple membrane in acid. Biochemistry. 1980 Aug 5;19(16):3825–3831. doi: 10.1021/bi00557a027. [DOI] [PubMed] [Google Scholar]
  23. Mathies R. A., Lin S. W., Ames J. B., Pollard W. T. From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump. Annu Rev Biophys Biophys Chem. 1991;20:491–518. doi: 10.1146/annurev.bb.20.060191.002423. [DOI] [PubMed] [Google Scholar]
  24. Metz G., Siebert F., Engelhard M. Asp85 is the only internal aspartic acid that gets protonated in the M intermediate and the purple-to-blue transition of bacteriorhodopsin. A solid-state 13C CP-MAS NMR investigation. FEBS Lett. 1992 Jun 1;303(2-3):237–241. doi: 10.1016/0014-5793(92)80528-o. [DOI] [PubMed] [Google Scholar]
  25. Metz G., Siebert F., Engelhard M. High-resolution solid state 13C NMR of bacteriorhodopsin: characterization of [4-13C]Asp resonances. Biochemistry. 1992 Jan 21;31(2):455–462. doi: 10.1021/bi00117a022. [DOI] [PubMed] [Google Scholar]
  26. Moore T. A., Edgerton M. E., Parr G., Greenwood C., Perham R. N. Studies of an acid-induced species of purple membrane from Halobacterium halobium. Biochem J. 1978 May 1;171(2):469–476. doi: 10.1042/bj1710469. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Mowery P. C., Lozier R. H., Chae Q., Tseng Y. W., Taylor M., Stoeckenius W. Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin. Biochemistry. 1979 Sep 18;18(19):4100–4107. doi: 10.1021/bi00586a007. [DOI] [PubMed] [Google Scholar]
  28. Nasuda-Kouyama A., Fukuda K., Iio T., Kouyama T. Effect of a light-induced pH gradient on purple-to-blue and purple-to-red transitions of bacteriorhodopsin. Biochemistry. 1990 Jul 24;29(29):6778–6788. doi: 10.1021/bi00481a005. [DOI] [PubMed] [Google Scholar]
  29. Oesterhelt D., Meentzen M., Schuhmann L. Reversible dissociation of the purple complex in bacteriorhodopsin and identification of 13-cis and all-trans-retinal as its chromophores. Eur J Biochem. 1973 Dec 17;40(2):453–463. doi: 10.1111/j.1432-1033.1973.tb03214.x. [DOI] [PubMed] [Google Scholar]
  30. Oesterhelt D., Stoeckenius W. Rhodopsin-like protein from the purple membrane of Halobacterium halobium. Nat New Biol. 1971 Sep 29;233(39):149–152. doi: 10.1038/newbio233149a0. [DOI] [PubMed] [Google Scholar]
  31. Ohno K., Takeuchi Y., Yoshida M. Effect of light-adaptation on the photoreaction of bacteriorhodopsin from Halobacterium halobium. Biochim Biophys Acta. 1977 Dec 23;462(3):575–582. doi: 10.1016/0005-2728(77)90102-5. [DOI] [PubMed] [Google Scholar]
  32. Pande C., Callender R. H., Chang C. H., Ebrey T. G. Resonance Raman spectra of the "blue" and the regenerated "purple" membranes of Halobacterium halobium. Photochem Photobiol. 1985 Nov;42(5):549–552. doi: 10.1111/j.1751-1097.1985.tb01608.x. [DOI] [PubMed] [Google Scholar]
  33. Rath P., Krebs M. P., He Y., Khorana H. G., Rothschild K. J. Fourier transform Raman spectroscopy of the bacteriorhodopsin mutant Tyr-185-->Phe: formation of a stable O-like species during light adaptation and detection of its transient N-like photoproduct. Biochemistry. 1993 Mar 9;32(9):2272–2281. doi: 10.1021/bi00060a020. [DOI] [PubMed] [Google Scholar]
  34. Richter H. T., Brown L. S., Needleman R., Lanyi J. K. A linkage of the pKa's of asp-85 and glu-204 forms part of the reprotonation switch of bacteriorhodopsin. Biochemistry. 1996 Apr 2;35(13):4054–4062. doi: 10.1021/bi952883q. [DOI] [PubMed] [Google Scholar]
  35. Roepe P. D., Ahl P. L., Herzfeld J., Lugtenburg J., Rothschild K. J. Tyrosine protonation changes in bacteriorhodopsin. A Fourier transform infrared study of BR548 and its primary photoproduct. J Biol Chem. 1988 Apr 15;263(11):5110–5117. [PubMed] [Google Scholar]
  36. Rothschild K. J. FTIR difference spectroscopy of bacteriorhodopsin: toward a molecular model. J Bioenerg Biomembr. 1992 Apr;24(2):147–167. doi: 10.1007/BF00762674. [DOI] [PubMed] [Google Scholar]
  37. Sharp K. A., Honig B. Electrostatic interactions in macromolecules: theory and applications. Annu Rev Biophys Biophys Chem. 1990;19:301–332. doi: 10.1146/annurev.bb.19.060190.001505. [DOI] [PubMed] [Google Scholar]
  38. Smith S. O., Mathies R. A. Resonance Raman spectra of the acidified and deionized forms of bacteriorhodopsin. Biophys J. 1985 Feb;47(2 Pt 1):251–254. doi: 10.1016/s0006-3495(85)83899-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Sonar S., Krebs M. P., Khorana H. G., Rothschild K. J. Static and time-resolved absorption spectroscopy of the bacteriorhodopsin mutant Tyr-185-->Phe: evidence for an equilibrium between bR570 and an O-like species. Biochemistry. 1993 Mar 9;32(9):2263–2271. doi: 10.1021/bi00060a019. [DOI] [PubMed] [Google Scholar]
  40. Song L., El-Sayed M. A., Lanyi J. K. Protein catalysis of the retinal subpicosecond photoisomerization in the primary process of bacteriorhodopsin photosynthesis. Science. 1993 Aug 13;261(5123):891–894. doi: 10.1126/science.261.5123.891. [DOI] [PubMed] [Google Scholar]
  41. Subramaniam S., Marti T., Khorana H. G. Protonation state of Asp (Glu)-85 regulates the purple-to-blue transition in bacteriorhodopsin mutants Arg-82----Ala and Asp-85----Glu: the blue form is inactive in proton translocation. Proc Natl Acad Sci U S A. 1990 Feb;87(3):1013–1017. doi: 10.1073/pnas.87.3.1013. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Thompson L. K., McDermott A. E., Raap J., van der Wielen C. M., Lugtenburg J., Herzfeld J., Griffin R. G. Rotational resonance NMR study of the active site structure in bacteriorhodopsin: conformation of the Schiff base linkage. Biochemistry. 1992 Sep 1;31(34):7931–7938. doi: 10.1021/bi00149a026. [DOI] [PubMed] [Google Scholar]
  43. Tsuda M., Glaccum M., Nelson B., Ebrey T. G. Light isomerizes the chromophore of bacteriorhodopsin. Nature. 1980 Sep 25;287(5780):351–353. doi: 10.1038/287351a0. [DOI] [PubMed] [Google Scholar]
  44. Turner G. J., Miercke L. J., Thorgeirsson T. E., Kliger D. S., Betlach M. C., Stroud R. M. Bacteriorhodopsin D85N: three spectroscopic species in equilibrium. Biochemistry. 1993 Feb 9;32(5):1332–1337. doi: 10.1021/bi00056a019. [DOI] [PubMed] [Google Scholar]
  45. Váró G., Lanyi J. K. Photoreactions of bacteriorhodopsin at acid pH. Biophys J. 1989 Dec;56(6):1143–1151. doi: 10.1016/S0006-3495(89)82761-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Warshel A., Ottolenighi M. Kinetic and spectroscopic effects of protein-chromophore electrostatic interactions in bacteriorhodopsin. Photochem Photobiol. 1979 Aug;30(2):291–293. doi: 10.1111/j.1751-1097.1979.tb07149.x. [DOI] [PubMed] [Google Scholar]
  47. de Groot H. J., Smith S. O., Courtin J., van den Berg E., Winkel C., Lugtenburg J., Griffin R. G., Herzfeld J. Solid-state 13C and 15N NMR study of the low pH forms of bacteriorhodopsin. Biochemistry. 1990 Jul 24;29(29):6873–6883. doi: 10.1021/bi00481a017. [DOI] [PubMed] [Google Scholar]

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