Abstract
Hemoglobin tetramers [Zn/FeO(2)] containing oxygenated subunits (FeO(2)), in combination with unligated subunits containing zinc-substituted hemes (Zn), were analyzed to determine their contributions to the cooperativity of oxygen binding at the Fe sites. Energetic consequences of possible perturbation by zinc substitution were evaluated in all combinations of unligated Zn/Fe hybrid tetramers. A general thermodynamic strategy that corrects for the energetic effects of substituting a second metal for Fe showed the perturbations of Zn substitution to be negligible. This permitted cooperativity parameters of the native Fe/FeO(2) intermediates to be calculated from data on the corresponding Zn/FeO(2) molecules. These parameters, determined explicitly for all eight oxygen-binding intermediates (Fe/FeO(2)), were found to be identical to those predicted earlier from analyzing the O(2) binding data of normal hemoglobin according to the "molecular code" of hemoglobin allostery. The cooperativity parameters determined for this system showed the same distribution pattern found previously for five other oxygen analog systems (Fe/FeCN, FE/Mn(3+), Co/FECO, Co/FeCN, and Fe/FeCO).
Full text
PDF











Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Ackers G. K. Analytical gel chromatography of proteins. Adv Protein Chem. 1970;24:343–446. doi: 10.1016/s0065-3233(08)60245-4. [DOI] [PubMed] [Google Scholar]
- Ackers G. K., Doyle M. L., Myers D., Daugherty M. A. Molecular code for cooperativity in hemoglobin. Science. 1992 Jan 3;255(5040):54–63. doi: 10.1126/science.1553532. [DOI] [PubMed] [Google Scholar]
- Ackers G. K., Halvorson H. R. The linkage between oxygenation and subunit dissociation in human hemoglobin. Proc Natl Acad Sci U S A. 1974 Nov;71(11):4312–4316. doi: 10.1073/pnas.71.11.4312. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ackers G. K., Johnson M. L. Analysis of hemoglobin oxygenation from combined equilibrium and kinetic data. Is quaternary enhancement necessary? Biophys Chem. 1990 Aug 31;37(1-3):265–279. doi: 10.1016/0301-4622(90)88026-o. [DOI] [PubMed] [Google Scholar]
- Ackers G. K. The energetics of ligand-linked subunit assembly in hemoglobin require a third allosteric structure. Biophys Chem. 1990 Aug 31;37(1-3):371–382. doi: 10.1016/0301-4622(90)88036-r. [DOI] [PubMed] [Google Scholar]
- Bettati S., Mozzarelli A., Rossi G. L., Tsuneshige A., Yonetani T., Eaton W. A., Henry E. R. Oxygen binding by single crystals of hemoglobin: the problem of cooperativity and inequivalence of alpha and beta subunits. Proteins. 1996 Aug;25(4):425–437. doi: 10.1002/prot.3. [DOI] [PubMed] [Google Scholar]
- Chu A. H., Ackers G. K. Mutual effects of protons, NaCl, and oxygen on the dimer-tetramer assembly of human hemoglobin. The dimer Bohr effect. J Biol Chem. 1981 Feb 10;256(3):1199–1205. [PubMed] [Google Scholar]
- Daugherty M. A., Shea M. A., Ackers G. K. Bohr effects of the partially-ligated (CN-met) intermediates of hemoglobin as probed by quaternary assembly. Biochemistry. 1994 Aug 30;33(34):10345–10357. doi: 10.1021/bi00200a015. [DOI] [PubMed] [Google Scholar]
- Daugherty M. A., Shea M. A., Johnson J. A., LiCata V. J., Turner G. J., Ackers G. K. Identification of the intermediate allosteric species in human hemoglobin reveals a molecular code for cooperative switching. Proc Natl Acad Sci U S A. 1991 Feb 15;88(4):1110–1114. doi: 10.1073/pnas.88.4.1110. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Doyle M. L., Ackers G. K. Cooperative oxygen binding, subunit assembly, and sulfhydryl reaction kinetics of the eight cyanomet intermediate ligation states of human hemoglobin. Biochemistry. 1992 Nov 17;31(45):11182–11195. doi: 10.1021/bi00160a032. [DOI] [PubMed] [Google Scholar]
- Doyle M. L., Lew G., Turner G. J., Rucknagel D., Ackers G. K. Regulation of oxygen affinity by quaternary enhancement: does hemoglobin Ypsilanti represent an allosteric intermediate? Proteins. 1992 Nov;14(3):351–362. doi: 10.1002/prot.340140304. [DOI] [PubMed] [Google Scholar]
- Doyle M. L., Speros P. C., LiCata V. J., Gingrich D., Hoffman B. M., Ackers G. K. Linkage between cooperative oxygenation and subunit assembly of cobaltous human hemoglobin. Biochemistry. 1991 Jul 23;30(29):7263–7271. doi: 10.1021/bi00243a031. [DOI] [PubMed] [Google Scholar]
- Hoffman B. M., Petering D. H. Coboglobins: oxygen-carrying cobalt-reconstituted hemoglobin and myoglobin. Proc Natl Acad Sci U S A. 1970 Oct;67(2):637–643. doi: 10.1073/pnas.67.2.637. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hofrichter J., Henry E. R., Sommer J. H., Deutsch R., Ikeda-Saito M., Yonetani T., Eaton W. A. Nanosecond optical spectra of iron-cobalt hybrid hemoglobins: geminate recombination, conformational changes, and intersubunit communication. Biochemistry. 1985 May 21;24(11):2667–2679. doi: 10.1021/bi00332a012. [DOI] [PubMed] [Google Scholar]
- Huang Y., Ackers G. K. Enthalpic and entropic components of cooperativity for the partially ligated intermediates of hemoglobin support a "symmetry rule" mechanism. Biochemistry. 1995 May 16;34(19):6316–6327. doi: 10.1021/bi00019a009. [DOI] [PubMed] [Google Scholar]
- Huang Y., Ackers G. K. Transformation of cooperative free energies between ligation systems of hemoglobin: resolution of the carbon monoxide binding intermediates. Biochemistry. 1996 Jan 23;35(3):704–718. doi: 10.1021/bi952400i. [DOI] [PubMed] [Google Scholar]
- Huang Y., Yonetani T., Tsuneshige A., Hoffman B. M., Ackers G. K. Heterometallic hybrids of homometallic human hemoglobins. Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):4425–4430. doi: 10.1073/pnas.93.9.4425. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Imai K., Ikeda-Saito M., Yamamoto H., Yonetani T. Studies on cobalt myoglobins and hemoglobins X. Determination of microscopic oxygen-equilibrium constants of iron--cobalt hybrid hemoglobins and their parent hemoglobins. J Mol Biol. 1980 Apr 15;138(3):635–648. doi: 10.1016/s0022-2836(80)80021-0. [DOI] [PubMed] [Google Scholar]
- Ip S. H., Ackers G. K. Thermodynamic studies on subunit assembly in human hemoglobin. Temperature dependence of the dimer-tetramer association constants for oxygenated and unliganded hemoglobins. J Biol Chem. 1977 Jan 10;252(1):82–87. [PubMed] [Google Scholar]
- Ip S. H., Johnson M. L., Ackers G. K. Kinetics of deoxyhemoglobin subunit dissociation determined by haptoglobin binding: estimation of the equilibrium constant from forward and reverse rates. Biochemistry. 1976 Feb 10;15(3):654–660. doi: 10.1021/bi00648a032. [DOI] [PubMed] [Google Scholar]
- Kellett G. L., Gutfreund H. Reactions of haemoglobin dimers after ligand dissociation. Nature. 1970 Aug 29;227(5261):921–926. doi: 10.1038/227921a0. [DOI] [PubMed] [Google Scholar]
- LiCata V. J., Dalessio P. M., Ackers G. K. Single-site modifications of half-ligated hemoglobin reveal autonomous dimer cooperativity within a quaternary T tetramer. Proteins. 1993 Nov;17(3):279–296. doi: 10.1002/prot.340170306. [DOI] [PubMed] [Google Scholar]
- LiCata V. J., Speros P. C., Rovida E., Ackers G. K. Direct and indirect pathways of functional coupling in human hemoglobin are revealed by quantitative low-temperature isoelectric focusing of mutant hybrids. Biochemistry. 1990 Oct 23;29(42):9771–9783. doi: 10.1021/bi00494a003. [DOI] [PubMed] [Google Scholar]
- Mills F. C., Ackers G. K. Thermodynamic studies on the oxygenation and subunit association of human hemoglobin. Temperature dependence of the linkage between dimer-tetramer association and oxygenation state. J Biol Chem. 1979 Apr 25;254(8):2881–2887. [PubMed] [Google Scholar]
- Mills F. C., Johnson M. L., Ackers G. K. Oxygenation-linked subunit interactions in human hemoglobin: experimental studies on the concentration dependence of oxygenation curves. Biochemistry. 1976 Nov 30;15(24):5350–5362. doi: 10.1021/bi00669a023. [DOI] [PubMed] [Google Scholar]
- Mozzarelli A., Rivetti C., Rossi G. L., Henry E. R., Eaton W. A. Crystals of haemoglobin with the T quaternary structure bind oxygen noncooperatively with no Bohr effect. Nature. 1991 May 30;351(6325):416–419. doi: 10.1038/351416a0. [DOI] [PubMed] [Google Scholar]
- Perrella M., Benazzi L., Shea M. A., Ackers G. K. Subunit hybridization studies of partially ligated cyanomethemoglobins using a cryogenic method. Evidence for three allosteric states. Biophys Chem. 1990 Jan;35(1):97–103. doi: 10.1016/0301-4622(90)80064-e. [DOI] [PubMed] [Google Scholar]
- Perrella M., Colosimo A., Benazzi L., Ripamonti M., Rossi-Bernardi L. What the intermediate compounds in ligand binding to hemoglobin tell about the mechanism of cooperativity. Biophys Chem. 1990 Aug 31;37(1-3):211–223. doi: 10.1016/0301-4622(90)88020-s. [DOI] [PubMed] [Google Scholar]
- Perrella M., Denisov I. Low-temperature electrophoresis methods. Methods Enzymol. 1995;259:468–487. doi: 10.1016/0076-6879(95)59057-9. [DOI] [PubMed] [Google Scholar]
- Perrella M., Rossi-Bernardi L. Detection of hemoglobin hybrid formation at subzero temperature. Methods Enzymol. 1981;76:133–143. doi: 10.1016/0076-6879(81)76122-6. [DOI] [PubMed] [Google Scholar]
- Perutz M. F. Stereochemistry of cooperative effects in haemoglobin. Nature. 1970 Nov 21;228(5273):726–739. doi: 10.1038/228726a0. [DOI] [PubMed] [Google Scholar]
- Pettigrew D. W., Romeo P. H., Tsapis A., Thillet J., Smith M. L., Turner B. W., Ackers G. K. Probing the energetics of proteins through structural perturbation: sites of regulatory energy in human hemoglobin. Proc Natl Acad Sci U S A. 1982 Mar;79(6):1849–1853. doi: 10.1073/pnas.79.6.1849. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rivetti C., Mozzarelli A., Rossi G. L., Henry E. R., Eaton W. A. Oxygen binding by single crystals of hemoglobin. Biochemistry. 1993 Mar 23;32(11):2888–2906. doi: 10.1021/bi00062a021. [DOI] [PubMed] [Google Scholar]
- Scholler D. M., Wang M. Y., Hoffman B. M. Metal-substituted hemoglobin and other hemoproteins. Methods Enzymol. 1978;52:487–493. doi: 10.1016/s0076-6879(78)52053-3. [DOI] [PubMed] [Google Scholar]
- Shibayama N., Imai K., Morimoto H., Saigo S. Oxygen equilibrium properties of nickel(II)-iron(II) hybrid hemoglobins cross-linked between 82 beta 1 and 82 beta 2 lysyl residues by bis(3,5-dibromosalicyl)fumarate: determination of the first two-step microscopic Adair constants for human hemoglobin. Biochemistry. 1995 Apr 11;34(14):4773–4780. doi: 10.1021/bi00014a035. [DOI] [PubMed] [Google Scholar]
- Smith F. R., Ackers G. K. Experimental resolution of cooperative free energies for the ten ligation states of human hemoglobin. Proc Natl Acad Sci U S A. 1985 Aug;82(16):5347–5351. doi: 10.1073/pnas.82.16.5347. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Smith F. R., Gingrich D., Hoffman B. M., Ackers G. K. Three-state combinatorial switching in hemoglobin tetramers: comparison between functional energetics and molecular structures. Proc Natl Acad Sci U S A. 1987 Oct;84(20):7089–7093. doi: 10.1073/pnas.84.20.7089. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Speros P. C., LiCata V. J., Yonetani T., Ackers G. K. Experimental resolution of cooperative free energies for the ten ligation species of cobalt(II)/iron(II)-CO hemoglobin. Biochemistry. 1991 Jul 23;30(29):7254–7262. doi: 10.1021/bi00243a030. [DOI] [PubMed] [Google Scholar]
- Turner B. W., Pettigrew D. W., Ackers G. K. Measurement and analysis of ligand-linked subunit dissociation equilibria in human hemoglobins. Methods Enzymol. 1981;76:596–628. doi: 10.1016/0076-6879(81)76147-0. [DOI] [PubMed] [Google Scholar]
- Turner G. J., Galacteros F., Doyle M. L., Hedlund B., Pettigrew D. W., Turner B. W., Smith F. R., Moo-Penn W., Rucknagel D. L., Ackers G. K. Mutagenic dissection of hemoglobin cooperativity: effects of amino acid alteration on subunit assembly of oxy and deoxy tetramers. Proteins. 1992 Nov;14(3):333–350. doi: 10.1002/prot.340140303. [DOI] [PubMed] [Google Scholar]
- Unzai S., Hori H., Miyazaki G., Shibayama N., Morimoto H. Oxygen equilibrium properties of chromium (III)-iron (II) hybrid hemoglobins. J Biol Chem. 1996 May 24;271(21):12451–12456. doi: 10.1074/jbc.271.21.12451. [DOI] [PubMed] [Google Scholar]
- Williams R. C., Jr, Tsay K. Y. A convenient chromatographic method for the preparation of human hemoglobin. Anal Biochem. 1973 Jul;54(1):137–145. doi: 10.1016/0003-2697(73)90256-x. [DOI] [PubMed] [Google Scholar]
- Yonetani T., Yamamoto H., Woodrow G. V., 3rd Studies on cobalt myoglobins and hemoglobins. I. Preparation and optical properties of myoglobins and hemoglobins containing cobalt proto-, meso-, and deuteroporphyrins and thermodynamic characterization of their reversible oxygenation. J Biol Chem. 1974 Feb 10;249(3):682–690. [PubMed] [Google Scholar]
