Abstract
Purpose of Review
In the absence of a prophylactic/therapeutic vaccine or cure, the most amazing achievement in the battle against HIV was the discovery of effective, well-tolerated combination antiretroviral therapy (cART). The primary research question remains whether PLWH on prolonged successful therapy has accelerated, premature, or accentuated biological aging. In this review, we discuss the current understanding of the immunometabolic profile in PLWH, potentially associated with biological aging, and a better understanding of the mechanisms and temporal dynamics of biological aging in PLWH.
Recent Findings
Biological aging, defined by the epigenetic alterations analyzed by the DNA methylation pattern, has been reported in PLWH with cART that points towards epigenetic age acceleration.
Summary
The hastened development of specific clinical geriatric syndromes like cardiovascular diseases, metabolic syndrome, cancers, liver diseases, neurocognitive diseases, persistent low-grade inflammation, and a shift toward glutamate metabolism in PLWH may potentiate a metabolic profile at-risk for accelerated aging.
Keywords: People living with HIV, Antiretroviral therapy, Biological aging, Immunometabolism
Introduction
Without a prophylactic or therapeutic vaccine and cure, the most amazing achievement in the battle against HIV was the discovery of effective, well-tolerated combination antiretroviral therapy (cART). The successful administration and adherence of cART have transformed this deadly virus infection into a manageable, lifelong, chronic disease. Even so, successful long-term treatment of HIV is associated with an increased and accentuated development of non-AIDS-related pathologies [1]. People living with HIV (PLWH) on successful treatment do not only die at an earlier age compared to uninfected individuals, but they also show signs of a higher incidence of age-related disorders due to the chronic inflammatory environment and immune cell activation [2]. The exact reason for this is still not known. Due to the globally increased life span of PLWH, predictive statistical models have shown that the number of PLWH over 50 is rising. In the Dutch ATHENA cohort, the proportion of PLWH aged 50 years or older was predicted to increase from 28% in 2010 to 73% in 2030 [3]. When discussing age, the most common measurement used is an individual's chronological age, meaning the time passed from birth to a given date. However, biological aging is more important when discussing what healthy aging means for PLWH. Biological aging is defined as the function and activity of the body's innate responses to external factors like an infection. With increasing age, the performance of the immune response decreases with a decline in cell division and the development of age-associated disorders such as dementia, frailty, and cardiovascular disease. The hallmark of biological aging and the molecular biomarker of cellular aging are multifaceted. It includes telomere shortening, DNA damage-mediated genomic instability, epigenetic alterations, cellular senescence, and replication arrest. Apart from those, the accumulation of reactive oxygen species (ROS), mitochondrial dysfunctions resulting in lower energy availability, and deregulated homeostasis of proteins (proteostasis) have also been proposed [4, 5••]. Furthermore, compromised autophagy, cellular senescence due to the proinflammatory-associated secretory phenotype (SASP), altered microbiome compositions, and dysregulation of RNA processing have recently been added to the old hallmark of aging [6••]. The new comprehensive hallmarks of aging are highly relevant for PLWH can be attributed to the characteristics of low-grade chronic inflammation and immune activation despite having successful therapy. The present review aims to discuss the current understanding of the immunometabolic profile in PLWH, potentially associated with biological aging, to provide a better understanding of the mechanisms and temporal dynamics of biological aging in PLWH.
Biological Aging with HIV
PLWH endure various age-related comorbidities compared to the general population. This has led to the hypothesis that PLWH may present higher biological age than their HIV-negative counterparts with similar chronological ages. Studies have pointed toward increased frailty [7, 8], higher incidence of cardiovascular disease [9], and malignancies [10, 11], in PLWH, compared to HIV-negative individuals of similar age. These observations led researchers to hypothesize that PLWH presumably ages faster and might need medical attention at an earlier age. However, the use of chronological age to compare aging may be highly confounded by the genetic background of the individuals, lifestyle, diet, and environmental exposures. With improved technologies, more advanced molecular data, and machine learning methods, "aging clocks" have been developed to predict the biological age more reliably. Biological aging, defined by the epigenetic alterations analyzed by the DNA methylation pattern, has been reported in PLWH, with cART pointing towards increased epigenetic aging markers in both the brain and blood [12, 13]. Moreover, a more recent study in PLWH from the NEAT001/ANRS143 cohort reported higher epigenetic age in PLWH using four different epigenetic clocks during treatment naïve conditions. The epigenetic age can be reduced by initiating antiretroviral therapy, but it remains higher in PLWH after two years of therapy compared to the HIV-negative counterparts [14••]. However, several critical factors can be attributed, including the severity of the initial immune dysfunction, exposure to the antiretrovirals, lifestyle, diet, gut microbiota dysbiosis, and persistence of low-grade inflammation. Biomarkers for transcriptomic aging can also measure biological age. Initial transcriptomic clocks of aging developed based on the RNA expression signature for age classification showed a low accuracy [15]. However, improvements are in progress [16]. Recent advancements in metabolomics data acquisition and reproduction, a metabolic signature of the aging process, and a metabolomics-based age predictor (metaboAge) have been proposed [17, 18]. The advantage of the metabolic signature of aging over the other molecular clocks is that it can guide lifestyle changes and potential interventions to improve metabolic health and immune function, leading to healthy aging and improving lifespan.
Immunometabolic reprogramming in PLWH
Immunometabolism is a concept used to describe the interplay between metabolic processes and immune cell functions. Immunometabolism is controlled mainly by the alteration of interconnected metabolic pathways, e.g., glycolysis, the pentose phosphate pathway (PPP), the tricarboxylic acid cycle (TCA cycle), fatty acid oxidation (FAO), and fatty acid synthesis (FAS) that are regulated by amino acid metabolism. A recent review summarized the links between HIV-1 infection and immunometabolic pathways [19••]. The metabolism of cells is a determinant factor that can regulate how the stimulation affects both the phenotype and function of cells. An increased biomolecule and energy production can alter metabolic pathways, consequently modulating the overall status of the immune cell, e.g., activation state and effector functions. Cell metabolic processes are regulated by external stimuli such as T-cell receptor (TCR) stimulation, glucose and glutamate availability, growth factors, cytokines, or oxygen tension. These signals can sustain the survival and effector functions of cells by inducing catabolic (generation of ATP for energy and amino acid production) or anabolic (biomolecule production for the synthesis of nucleic acids, lipids, and proteins) processes [20]. With such a large variety of inducers comes a plethora of internal signaling pathways that mediate the downstream adaptation, including protein kinase B (AKT), phosphoinositide 3-kinase (PI3K), mammalian target of rapamycin (mTOR), hypoxia-inducible factor (HIF), cellular myelocytomatosis oncogene (c-Myc), and AMP-activated protein kinase (AMPK) signaling [21]. Additionally, as the oxygen tension ranges between 1 and 12% from body compartments to arterial blood, cellular metabolism can be aerobic or anaerobic [22, 23]. Aerobic metabolism relies on the three pillars of central carbon metabolism (CMM): glycolysis, the TCA cycle, and the PPP. Additionally, oxidative phosphorylation (OXPHOS) in the mitochondria is coupled to the TCA cycle, which results in a slow metabolic process generating high amounts of ATP. Anaerobic metabolism consists of glucose conversion into lactate, resulting in rapid ATP production but less energy-efficient [21]. The mTOR signaling pathway consists of two serine/threonine protein kinases complexes, mTORC1 and mTORC2. Of these, mTORC1 regulates lipid metabolism, mitochondrial biosynthesis, and induction of HIF signaling, while mTORC2 is believed to mainly regulate glucose uptake, glycolysis, gluconeogenesis, and OXPHOS [24, 25]. Downstream of mTOR is HIF signaling, a major adaptor to cellular stress, regulating the transcriptional activity of more than 100 downstream proteins. Activation results in the dimerization of the two isoforms of HIF, namely, HIF-1ɑ and HIF-1β. Upon dimerization, these proteins are translocated into the nuclei, where they bind the hypoxia response element (HRE), inducing transcriptional activation of target genes for cell survival, proliferation, differentiation, angiogenesis, and apoptosis [26]. Therefore, HIF is a signaling pathway mainly activated during low oxygen availability. As such, HIF signaling is the major mediator of glycolysis while decreasing the oxidation of ɑKG to succinate, leading to decreased TCA metabolites and increased citrate production that can be used for fatty acid metabolism [27]. On the other hand, during high oxygen availability, alternative pathways are induced to regulate metabolic reprogramming based on external stimuli and demand. Upregulation of the PI3K/Akt/mTOR/HIF signaling promotes anabolic metabolism, while catabolic processes are induced upon low ATP availability by inducing AMPK signaling [28]. Additionally, during activation-induced reprogramming of T cells, c-Myc has been described as essential [29]. Collectively, all these pathways create a complex network for metabolic adaptations to ensure appropriate cellular functions during homeostasis and disease.
Emerging evidence suggests that immunometabolism is crucial in HIV pathogenesis [19••]. In PLWH, the link between the processes mentioned above and pathways is not well understood. Several factors can regulate the susceptibility to HIV during infection, such as the cell’s metabolic activity, activation stage, and glycolytic enzymes, where elevated glycolysis and OXPHOS favor infection in CD4+ T cells [30, 31]. In a recent study from our group, we detected reduced expression of the glucose transporter (Glut1) on T lymphocytes in HIV-positive elite controllers (EC) who naturally control viral replication compared to uninfected controls [32]. The uptake of glucose through Glut1 is vital for virus production [33]. Therefore, this could be a potential mechanism restricting virus propagation in EC. When looking at latent HIV, data from a recent study suggested that the HIV reservoirs could use glutaminolysis as an alternative pathway to generate energy [34]. Glutaminolysis (where glutamine is lysed to glutamate and other TCA cycle product) is the main pathway that fuels the TCA cycle and OXPHOS in some T-cell subsets, such as naïve and memory T-cells. Another recent study reported that HIV infection is higher in T cells selected for OXPHOS activity [31]. Additionally, it has been shown that compromised metabolic steps preceding OXPHOS can accumulate lipids [34]. Further, our in vitro study observed a significant effect on latent virus reactivation when modulating glutaminolysis, indicating a substantial role of glutaminolysis in regulating latent HIV [35••]. Moreover, a recent seminal study showed how glutaminolysis is essential in senescent cells and proposed that inhibiting glutaminolysis in the aging body may prevent age-associated disorders and even extend the life span [36]. This data showed a small fraction of the complex interplay between metabolism, immune cell functions and HIV. Our recent studies indicated that immune-metabolic reprogramming is typical in long-term treated individuals in several cohorts. The metabolic rewiring during prolonged therapy is associated with the viral reservoir and linked to the dysregulation of glutamate metabolism. High extracellular glutamate levels can be involved in developing neurological disorders in PLWH [37••]. However, neurotoxicity mediated by elevated glutamate levels can be rescued by both lactate and pyruvate scavengers [38, 39]. Conclusively, immune cell metabolism is regulated by a complex network that can determine the activation and function of cells and environmental adaptations. Additionally, in the context of HIV, oxidative stress and metabolic alterations can contribute to a chronic inflammatory environment in PLWH.
Specifically in HIV infection, studies have shown how PLWH on ART both have increased surface expression of Glut1 and increased markers of aerobic glycolysis in both CD4+ and CD8+ T cells [31, 40, 41]. Furthermore, in central and naïve CD4+ T cells, Glut1 expression has been correlated to the immune activation marker HLA-DR, while metabolism relying on glycolysis correlates to the mitochondrial density of cells [40, 41]. This data indicates that these cells might have a higher mitochondrial capacity making them more suited to respond to infections rapidly. However, some studies have shown how Glut1 is a marker of T-cell activation. In contrast, others have shown how Glut1 expression on CD8+ T cells is not associated with other activation markers [40]. Similarly to T cells, monocytes in PLWH on ART also have an elevated expression of Glut1 [42]. Therefore, if Glut1 should be viewed as a marker of the activation of cells remains unknown.
Furthermore, in PLWH, HIV infection has been associated with mitochondrial dysfunction from plasma metabolomics data. Specifically, this study showed how PLWH had a decrease in mitochondrial fatty acid oxidation (β-oxidation) and enrichment of oxidation in the smooth endoplasmic reticulum (ER) (Ω-oxidation) [43]. These augmented mitochondrial functions can contribute to aberrant immune cell functions in PLWH. Additionally, the viral protein Vpr can contribute to a dysregulation of glutamate metabolism in infected macrophages [44]. After preferential glutaminolysis, the mTORC1 signaling pathway promotes cell growth while inhibiting autophagy [45]. In monocytes, studies have shown how the HIV reservoir is sustained by the enrichment of pyruvate metabolism and glycolytic pathways for PPP if key mitochondrial enzymes are downregulated [46]. Moreover, there seems to be a shift in infected macrophages from OXHPOS upon quiescence, as they mainly rely on glutaminolysis and glucose and fatty acid metabolism [34]. Additionally, the memory capacity of monocytes mainly relies on glycolysis mediated through Akt/mTOR/HIF signaling [47, 48]. Collectively, these studies have contributed to our understanding of how metabolism shapes the activity and function of cells during HIV infection. However, further studies must elucidate how these factors relate to chronic inflammation and earlier aging in PLWH.
Appropriate cellular adaptation of immune cells to their environment partially depends on metabolic reprogramming. Simultaneously, viral evolution has developed strategies allowing the exploitation of the host cellular metabolic machinery to promote virus replication and spread in the body [49]. Studies on HIV infection have shown how the metabolic activity of a cell plays an essential role in virus susceptibility, where CD4+ T cells with high glycolysis and OXPHOS have a higher permissiveness to infection [30, 31, 50]. This metabolic profile is similar to activated T cells, while both naïve and resting T cells are less susceptible to infection [51, 52]. Another factor that increases both the susceptibility and transcription of HIV is high glucose availability, mediated by a ROS-induced uptake of glucose through Glut1 and upregulation of HIF-1ɑ and CXCR4 [33, 53]. Just as important as the metabolic environment is for HIV susceptibility, it also shows after the virus has infected a cell. Viral replication is a highly exhausting process where the virus needs to take over both the cellular biosynthesis machinery and processes for the biosynthesis of macromolecules [54]. During HIV infection, these energy requirements are met by increasing glycolysis through the upregulation of glucose receptors in both monocytes and lymphocytes [40, 42, 55–57]. The virus can also regulate glycolytic enzyme activity to promote replication [58]. However, studies have also shown that these glycolytic enzymes can have antiviral functions, showing a dual activity during HIV infection [59, 60]. The dependency of glycolysis in virus-infected cells also leaves options for intervention as infected cells’ viability is more sensitive towards glycolytic inhibition than uninfected cells [30]. Therefore, even as the virus increases the metabolic rate for its propagation and spread, it can open for metabolic targeting of pathways essential for virus propagation.
Besides being an essential pathway for metabolic reprogramming, studies have shown how the mTOR pathway regulates both HIV latency and memory T cell function [61–63]. In PLWH on ART, T cells rely to a great extent on glucose metabolism regulated by mTORC1. In contrast, the capacity of CD8+ T cells in PLWH with natural control of infection (EC) to suppress infection is regulated by mTORC2-controlled glucose metabolism and OXPHOS [64]. The enrichment of mTORC2 in EC indicates its relevance in HIV persistence [65]. Moreover, studies have shown how before the loss of natural control of infection, the metabolism of EC exhibit a shift to aerobic glycolysis, deregulated mitochondrial activity together with immune activation, and elevated oxidative stress [66]. Even as this data shows how metabolic adaptations might be involved in control/loss of natural control of infection, whether the virus’ production induces the shift in metabolism or the other way around remains a mystery.
Glycolysis is crucial for the activation of cells. In monocytes, it is needed for TNF secretion, while it is also essential for T cells to exert effector functions, such as INF-γ production [67, 68]. The proinflammatory profile of monocytes, measured by TNF secretion, can be suppressed by lactate [67]. Another study also showed how lactate could suppress the HIV-specific functions of CD8+ T cells, emphasizing how single metabolites can alter immune cell functions [69]. Additionally, the epigenetic landscape of cells can be modulated by the downstream effects of αKG [70]. Even as this data shows how individual metabolites can play essential roles in the modulation of different immunometabolic processes, these are just initial studies starting to elucidate the functions of individual metabolites or signaling pathways. The dynamics of how these systems or structures act in favor or against the functions of immune cells in PLWH as a consequence of infection or alternative comorbidities require further understanding. Additionally, even as many studies have tried to elucidate what role immunometabolism in different immune cells (e.g., lymphocytes, myeloid lineage cells) plays in PLWH (Fig. 1), exactly which metabolic changes occur, and their impact on immune cell functions, the inflammatory environment, and aging remains unknown.
System Biological Studies Defining the Immune Aging in PLWH
Technological advancements in the big data field have rapidly developed, allowing a comprehensive snapshot of different levels of biological processes, from the genome to the metabolome. Data-driven, unbiased scientific analyses have been able to aid in our understanding of physiological aberrations during different disease conditions [71]. Multi-omics system biology analysis combining single omics-level data, such as genomics, transcriptomics, epigenome, proteomics, and metabolomics, can provide helpful information about biological processes and functions [72]. The end product, metabolites, will be a response in the form of a phenotype. Alternatively, as each step in this line will result in decreased information, a bottom-up approach can be used. However, in a bottom-up approach, a significant fraction of information will be lost along the way. Even so, this phenotype-first-driven approach can be advantageous by targeting the analysis from a higher level to find in-depth differences. Integrating data from several omics layers is a method in the system biology approach [73]. Albeit less applied in HIV infection, both single-level and integrative-omics analyses have contributed significantly to our understanding of phenotypic aberrations and physiological modulations during disease state [74–76]. In recent studies from our group, using integrative omics and immune phenotyping comparing different HIV disease states, e.g., EC with PLWH with cART for more than a decade of treatment, we reported critical differences linked with (a) the dysregulated energy metabolism and (b) observations of unique immune-metabolic properties of myeloid lineages related with the HIV-persistence [32, 35••, 74, 77••, 78]. We also performed extensive studies on three different cohorts from India [79], Cameroon [35••], and Sweden, with more than 500 PLWH, indicating that disrupted glutaminolysis is prevalent in PLWHART in all three cohorts (Fig. 2) that play the central role in the comorbidities such as metabolic syndrome (MetS) observed in another Danish cohort [35••, 77••]. Additionally, a seminal multi-omics analysis study contributed to our understanding of immunometabolic regulation during HIV infection in CD4+ T cells [80].
We also developed a context-specific system-level Genome-Scale Metabolic Model (GSMM) using global RNA sequencing data on blood cells from PLWH that had suppressive viremia by natural mechanisms (EC) or drug-induced suppression (PLWH on cART) [81]. To provide a comprehensive system-level characterization, this GSMM was also compared to HIV-negative controls. The transcriptomic analysis identified upregulation of OXPHOS as a characteristic of PLWH on cART, differentiating them from the EC group. To see the flow of metabolites through the metabolic pathways, Flux balance analysis identified alterations in the flux of several intermediates in glycolysis, including pyruvate, ɑKG, and glutamate, in PLWH on cART. The topological analysis to understand the metabolic reprogramming metabolic networks were generated for PLWH on cART, EC, and HC cohorts. The reactions’ metabolic networks and associated genes exhibited significant diverging flux among the three cohorts. Among the metabolites, ɑKG uniquely plays a central role in PLWH on cART and EC compared to HC, indicative of a role of ɑKG in PLWH. ɑKG plays an essential regulatory role in modulating the metabolism in macrophages [82] by altering immune-cell function affecting human health that can be restored through metabolic intervention [83]. Despite the recent advancement of immune aging in PLWH, we do not fully understand how HIV affects the immune system and other organs during aging. Further knowledge could help to identify persons at risk for non-infectious severe complications. Application of the system biology studies by combining several layers of omic data, a comprehensive understanding of the aging phenotype and mechanism of immune aging in the PLWH can be possible.
Conclusion
Does PLWH on successful therapy aging faster? Several terms, like accelerated, premature, or accentuated aging, were used in defining aging in PLWH. The terms accelerated and premature aging crudely describe increased changes over time that would arise earlier and increase progressively. In contrast, accentuated aging describes an increased burden of age-related damage that occurs at the same age as the general population and is static over time [84]. HIV-associated non-AIDS conditions like cardiovascular diseases, metabolic syndrome (MetS), cancers, liver diseases, and neurocognitive diseases can be associated with advancing age, where HIV or the cART may be an additional risk factor for accentuated aging in PLWH. Low-grade persistence inflammation and macrophage activation despite successful cART may play a crucial role in premature age-associated diseases and immunosenescence in PLWH. A shift towards the systemic glutamate metabolism during prolonged cART [35••, 79, 85] may potentiate the metabolic profile at-risk for accelerated aging. The epigenetic age acceleration (EAA) was reported in PLWH without ART in all tissue [12]. However, the initiation of the treatment may slow the EAA [14••]. There is no doubt that the development of specific clinical geriatric syndromes is hastened in PLWH [84].
Given the multi-faced nature of biological aging in PLWH without any biological aging biomarkers, it is essential to design an appropriate study with an adequately matched control group that most current studies failed to address. The confounding factors like lifestyle, diet, environmental pre-disposition, pre-ART immunodeficiency, and cART itself should be considered in the study design to define the biological aging in PLWH. The development and application of systems biology and machine learning methodologies can provide a better understanding of the mechanisms and temporal dynamics of biological aging in PLWH. Applying multi-omics systems biology to define the immunometabolism and biological aging in PLWH could be beneficial to identify the mechanisms of accelerated, premature, or accentuated biological aging in PLWH if it persists.
Funding
Open access funding provided by Karolinska Institute. Authors acknowledge the support received from the Swedish Research Council grants 2017–01330, 2018–06156, and 2021–01756.
Declarations
Conflict of Interest
The authors declare no competing interests.
Human and Animal Rights
This article does not contain any studies with human or animal subjects performed by any authors.
Footnotes
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Contributor Information
Sara Svensson Akusjärvi, Email: sara.svensson.akusjarvi@ki.se.
Ujjwal Neogi, Email: ujjwal.neogi@ki.se.
References
Papers of particular interest, published recently, have been highlighted as: •• Of major importance
- 1.Deeks SG. HIV infection, inflammation, immunosenescence, and aging. Annu Rev Med. 2011;62:141–155. doi: 10.1146/annurev-med-042909-093756. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.Massanella M, Fromentin R, Chomont N. Residual inflammation and viral reservoirs: alliance against an HIV cure. Curr Opin HIV AIDS. 2016;11(2):234–241. doi: 10.1097/COH.0000000000000230. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Smit M, Brinkman K, Geerlings S, Smit C, Thyagarajan K, Sighem A, de Wolf F, Hallett TB. Future challenges for clinical care of an ageing population infected with HIV: a modelling study. Lancet Infect Dis. 2015;15(7):810–818. doi: 10.1016/S1473-3099(15)00056-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Ferrucci L, Gonzalez-Freire M, Fabbri E, Simonsick E, Tanaka T, Moore Z, Salimi S, Sierra F, de Cabo R. Measuring biological aging in humans: a quest. Aging Cell. 2020;19(2):e13080–e13080. doi: 10.1111/acel.13080. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.••.López-Otín C, Blasco MA, Partridge L, Serrano M, Kroemer G. The hallmarks of aging. Cell. 2013;153(6):1194–1217. doi: 10.1016/j.cell.2013.05.039. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.••.Schmauck-Medina T, Molière A, Lautrup S, Zhang J, Chlopicki S, Madsen HB, Cao S, Soendenbroe C, Mansell E, Vestergaard MB, et al. New hallmarks of ageing: a 2022 Copenhagen ageing meeting summary. Aging. 2022;14(16):6829–6839. doi: 10.18632/aging.204248. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Oursler KK, Sorkin JD, Smith BA, Katzel LI. Reduced aerobic capacity and physical functioning in older HIV-infected men. AIDS Res Hum Retroviruses. 2006;22(11):1113–1121. doi: 10.1089/aid.2006.22.1113. [DOI] [PubMed] [Google Scholar]
- 8.Desquilbet L, Jacobson LP, Fried LP, Phair JP, Jamieson BD, Holloway M, Margolick JB. HIV-1 infection is associated with an earlier occurrence of a phenotype related to frailty. J Gerontol A Biol Sci Med Sci. 2007;62(11):1279–1286. doi: 10.1093/gerona/62.11.1279. [DOI] [PubMed] [Google Scholar]
- 9.Triant VA, Lee H, Hadigan C, Grinspoon SK. Increased acute myocardial infarction rates and cardiovascular risk factors among patients with human immunodeficiency virus disease. J Clin Endocrinol Metab. 2007;92(7):2506–2512. doi: 10.1210/jc.2006-2190. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Burgi A, Brodine S, Wegner S, Milazzo M, Wallace MR, Spooner K, Blazes DL, Agan BK, Armstrong A, Fraser S, et al. Incidence and risk factors for the occurrence of non-AIDS-defining cancers among human immunodeficiency virus-infected individuals. Cancer. 2005;104(7):1505–1511. doi: 10.1002/cncr.21334. [DOI] [PubMed] [Google Scholar]
- 11.Malmström S, Wagner P, Yilmaz A, Svedhem V, Carlander C. Failure to restore CD4+ cell count associated with infection-related and noninfection-related cancer. AIDS. 2022;36(3):447–457. doi: 10.1097/QAD.0000000000003117. [DOI] [PubMed] [Google Scholar]
- 12.Horvath S, Levine AJ. HIV-1 infection accelerates age according to the epigenetic clock. J Infect Dis. 2015;212(10):1563–1573. doi: 10.1093/infdis/jiv277. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Gross AM, Jaeger PA, Kreisberg JF, Licon K, Jepsen KL, Khosroheidari M, Morsey BM, Swindells S, Shen H, Ng CT, et al. Methylome-wide analysis of chronic HIV infection reveals five-year increase in biological age and epigenetic targeting of HLA. Mol Cell. 2016;62(2):157–168. doi: 10.1016/j.molcel.2016.03.019. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.••.Esteban-Cantos A, Rodríguez-Centeno J, Barruz P, Alejos B, Saiz-Medrano G, Nevado J, Martin A, Gayá F, De Miguel R, Bernardino JI, et al. Epigenetic age acceleration changes 2 years after antiretroviral therapy initiation in adults with HIV: a substudy of the NEAT001/ANRS143 randomised trial. The lancet HIV. 2021;8(4):e197–e205. doi: 10.1016/S2352-3018(21)00006-0. [DOI] [PubMed] [Google Scholar]
- 15.Meyer DH, Schumacher B. BiT age: A transcriptome-based aging clock near the theoretical limit of accuracy. Aging Cell. 2021;20(3):e13320. doi: 10.1111/acel.13320. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Holzscheck N, Falckenhayn C, Söhle J, Kristof B, Siegner R, Werner A, Schössow J, Jürgens C, Völzke H, Wenck H, et al. Modeling transcriptomic age using knowledge-primed artificial neural networks. NPJ Aging Mech Dis. 2021;7(1):15. doi: 10.1038/s41514-021-00068-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Bucaciuc Mracica T, Anghel A, Ion CF, Moraru CV, Tacutu R, Lazar GA. MetaboAge DB: a repository of known ageing-related changes in the human metabolome. Biogerontology. 2020;21(6):763–771. doi: 10.1007/s10522-020-09892-w. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.van den Akker EB, Trompet S, Barkey Wolf JJH, Beekman M, Suchiman HED, Deelen J, Asselbergs FW, Boersma E, Cats D, Elders PM, et al. Metabolic age based on the BBMRI-NL (1)H-NMR metabolomics repository as biomarker of age-related disease. Circ Genom Precis Med. 2020;13(5):541–547. doi: 10.1161/CIRCGEN.119.002610. [DOI] [PubMed] [Google Scholar]
- 19.••.Sáez-Cirión A, Sereti I. Immunometabolism and HIV-1 pathogenesis: food for thought. Nat Rev Immunol. 2021;21(1):5–19. doi: 10.1038/s41577-020-0381-7. [DOI] [PubMed] [Google Scholar]
- 20.Sánchez López de Nava A, Raja A: Physiology, Metabolism. In: StatPearls. Treasure Island (FL): StatPearls Publishing, Copyright © 2022, StatPearls Publishing LLC.; 2022.
- 21.DeBerardinis RJ, Thompson CB. Cellular metabolism and disease: what do metabolic outliers teach us? Cell. 2012;148(6):1132–1144. doi: 10.1016/j.cell.2012.02.032. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Atkuri KR, Herzenberg LA, Niemi A-K, Cowan T, Herzenberg LA. Importance of culturing primary lymphocytes at physiological oxygen levels. Proc Natl Acad Sci USA. 2007;104(11):4547–4552. doi: 10.1073/pnas.0611732104. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Sitkovsky M, Ohta A, Subramanian M, Kini R, Diwanji R, Ohta A. In vivo T cell activation in lymphoid tissues is inhibited in the oxygen-poor microenvironment. Front Immunol. 2011;2:27. 10.3389/fimmu.2011.00027. [DOI] [PMC free article] [PubMed]
- 24.Luo Y, Xu W, Li G, Cui W. Weighing in on mTOR complex 2 signaling: the expanding role in cell metabolism. Oxid Med Cell Longev. 2018;2018:7838647. doi: 10.1155/2018/7838647. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Toschi A, Lee E, Gadir N, Ohh M, Foster DA. Differential dependence of hypoxia-inducible factors 1 alpha and 2 alpha on mTORC1 and mTORC2. J Biol Chem. 2008;283(50):34495–34499. doi: 10.1074/jbc.C800170200. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Masoud GN, Li W. HIF-1alpha pathway: role, regulation and intervention for cancer therapy. Acta Pharm Sin B. 2015;5(5):378–389. doi: 10.1016/j.apsb.2015.05.007. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Sun RC, Denko NC. Hypoxic regulation of glutamine metabolism through HIF1 and SIAH2 supports lipid synthesis that is necessary for tumor growth. Cell Metab. 2014;19(2):285–292. doi: 10.1016/j.cmet.2013.11.022. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Mihaylova MM, Shaw RJ. The AMPK signalling pathway coordinates cell growth, autophagy and metabolism. Nat Cell Biol. 2011;13(9):1016–1023. doi: 10.1038/ncb2329. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Wang R, Dillon CP, Shi LZ, Milasta S, Carter R, Finkelstein D, McCormick LL, Fitzgerald P, Chi H, Munger J, et al. The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation. Immunity. 2011;35(6):871–882. doi: 10.1016/j.immuni.2011.09.021. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Valle-Casuso JC, Angin M, Volant S, Passaes C, Monceaux V, Mikhailova A, Bourdic K, Avettand-Fenoel V, Boufassa F, Sitbon M, et al. Cellular metabolism is a major determinant of HIV-1 reservoir seeding in CD4(+) T cells and offers an opportunity to tackle infection. Cell Metab. 2019;29(3):611–626 e615. doi: 10.1016/j.cmet.2018.11.015. [DOI] [PubMed] [Google Scholar]
- 31.Clerc I, Abba Moussa D, Vahlas Z, Tardito S, Oburoglu L, Hope TJ, Sitbon M, Dardalhon V, Mongellaz C, Taylor N. Entry of glucose- and glutamine-derived carbons into the citric acid cycle supports early steps of HIV-1 infection in CD4 T cells. Nat Metab. 2019;1(7):717–730. doi: 10.1038/s42255-019-0084-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Sperk M, Mikaeloff F, Svensson-Akusjärvi S, Krishnan S, Ponnan SM, Ambikan AT, Nowak P, Sönnerborg A, Neogi U. Distinct lipid profile, low-level inflammation, and increased antioxidant defense signature in HIV-1 elite control status. iScience. 2021;24(2):102111. doi: 10.1016/j.isci.2021.102111. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Loisel-Meyer S, Swainson L, Craveiro M, Oburoglu L, Mongellaz C, Costa C, Martinez M, Cosset F-L, Battini J-L, Herzenberg LA, et al. Glut1-mediated glucose transport regulates HIV infection. Proc Natl Acad Sci USA. 2012;109(7):2549–2554. doi: 10.1073/pnas.1121427109. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Castellano P, Prevedel L, Valdebenito S, Eugenin EA. HIV infection and latency induce a unique metabolic signature in human macrophages. Sci Rep. 2019;9(1):3941. doi: 10.1038/s41598-019-39898-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.•• Mikaeloff F, Svensson-Akusjärvi S, Ikomey GM, Krishnan S, Sperk M, Gupta S, Vega Magdaleno GD, Escós A, Lyonga E, Okomo MC et al. Trans cohorts metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-Infection: potential role in accelerated aging and latency reversal. Commun Biol. 2021;5(1):27. 10.1038/s42003-021-02985-3. [DOI] [PMC free article] [PubMed]
- 36.Johmura Y, Yamanaka T, Omori S, Wang TW, Sugiura Y, Matsumoto M, Suzuki N, Kumamoto S, Yamaguchi K, Hatakeyama S, et al. Senolysis by glutaminolysis inhibition ameliorates various age-associated disorders. Science. 2021;371(6526):265–270. doi: 10.1126/science.abb5916. [DOI] [PubMed] [Google Scholar]
- 37.••.Vázquez-Santiago FJ, Noel RJ, Jr, Porter JT, Rivera-Amill V. Glutamate metabolism and HIV-associated neurocognitive disorders. J Neurovirol. 2014;20(4):315–331. doi: 10.1007/s13365-014-0258-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Ros J, Pecinska N, Alessandri B, Landolt H, Fillenz M. Lactate reduces glutamate-induced neurotoxicity in rat cortex. J Neurosci Res. 2001;66(5):790–794. doi: 10.1002/jnr.10043. [DOI] [PubMed] [Google Scholar]
- 39.Boyko M, Melamed I, Gruenbaum BF, Gruenbaum SE, Ohayon S, Leibowitz A, Brotfain E, Shapira Y, Zlotnik A. The effect of blood glutamate scavengers oxaloacetate and pyruvate on neurological outcome in a rat model of subarachnoid hemorrhage. Neurotherapeutics. 2012;9(3):649–657. doi: 10.1007/s13311-012-0129-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Palmer CS, Ostrowski M, Gouillou M, Tsai L, Yu D, Zhou J, Henstridge DC, Maisa A, Hearps AC, Lewin SR, et al. Increased glucose metabolic activity is associated with CD4+ T-cell activation and depletion during chronic HIV infection. AIDS. 2014;28(3):297–309. doi: 10.1097/QAD.0000000000000128. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Masson JJR, Murphy AJ, Lee MKS, Ostrowski M, Crowe SM, Palmer CS. Assessment of metabolic and mitochondrial dynamics in CD4+ and CD8+ T cells in virologically suppressed HIV-positive individuals on combination antiretroviral therapy. PLoS ONE. 2017;12(8):e0183931. doi: 10.1371/journal.pone.0183931. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Palmer CS, Anzinger JJ, Zhou J, Gouillou M, Landay A, Jaworowski A, McCune JM, Crowe SM. Glucose transporter 1–expressing proinflammatory monocytes are elevated in combination antiretroviral therapy–treated and untreated HIV+ subjects. J Immunol. 2014;193(11):5595–5603. doi: 10.4049/jimmunol.1303092. [DOI] [PubMed] [Google Scholar]
- 43.Scarpelini B, Zanoni M, Sucupira MCA. Truong H-HM, Janini LMR, Segurado IDC, Diaz RS: Plasma metabolomics biosignature according to HIV stage of infection, pace of disease progression, viremia level and immunological response to treatment. PLoS ONE. 2016;11(12):e0161920. doi: 10.1371/journal.pone.0161920. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Datta PK, Deshmane S, Khalili K, Merali S, Gordon JC, Fecchio C, Barrero CA. Glutamate metabolism in HIV-1 infected macrophages: role of HIV-1 Vpr. Cell Cycle. 2016;15(17):2288–2298. doi: 10.1080/15384101.2016.1190054. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Durán Raúl V, Oppliger W, Robitaille Aaron M, Heiserich L, Skendaj R, Gottlieb E, Hall Michael N. Glutaminolysis activates Rag-mTORC1 signaling. Mol Cell. 2012;47(3):349–358. doi: 10.1016/j.molcel.2012.05.043. [DOI] [PubMed] [Google Scholar]
- 46.Barrero CA, Datta PK, Sen S, Deshmane S, Amini S, Khalili K, Merali S. HIV-1 Vpr modulates macrophage metabolic pathways: a SILAC-based quantitative analysis. PLoS ONE. 2013;8(7):e68376. doi: 10.1371/journal.pone.0068376. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Zuo H, Wan Y. Metabolic reprogramming in mitochondria of myeloid cells. Cells. 2019;9(1):5. 10.3390/cells9010005. [DOI] [PMC free article] [PubMed]
- 48.Cheng SC, Quintin J, Cramer RA, Shepardson KM, Saeed S, Kumar V, Giamarellos-Bourboulis EJ, Martens JH, Rao NA, Aghajanirefah A, et al. mTOR- and HIF-1alpha-mediated aerobic glycolysis as metabolic basis for trained immunity. Science (New York, NY) 2014;345(6204):1250684. doi: 10.1126/science.1250684. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Magalhaes I, Yogev O, Mattsson J, Schurich A. The metabolic profile of tumor and virally infected cells shapes their microenvironment counteracting T cell immunity. Front Immunol. 2019;10:2309. doi: 10.3389/fimmu.2019.02309. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 50.Hegedus A, Kavanagh Williamson M, Khan MB, Dias Zeidler J, Da Poian AT, El-Bacha T, Struys EA, Huthoff H. Evidence for altered glutamine metabolism in human immunodeficiency virus type 1 infected primary human CD4(+) T cells. AIDS Res Hum Retroviruses. 2017;33(12):1236–1247. doi: 10.1089/aid.2017.0165. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.Stevenson M, Stanwick TL, Dempsey MP, Lamonica CA. HIV-1 replication is controlled at the level of T cell activation and proviral integration. Embo j. 1990;9(5):1551–1560. doi: 10.1002/j.1460-2075.1990.tb08274.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 52.Pan X, Baldauf H-M, Keppler OT, Fackler OT. Restrictions to HIV-1 replication in resting CD4+ T lymphocytes. Cell Res. 2013;23(7):876–885. doi: 10.1038/cr.2013.74. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 53.Lan X, Cheng K, Chandel N, Lederman R, Jhaveri A, Husain M, Malhotra A, Singhal PC. High glucose enhances HIV entry into T cells through upregulation of CXCR4. J Leukoc Biol. 2013;94(4):769–777. doi: 10.1189/jlb.0313142. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54.Mayer KA, Stockl J, Zlabinger GJ, Gualdoni GA. Hijacking the supplies: metabolism as a novel facet of virus-host interaction. Front Immunol. 2019;10:1533. doi: 10.3389/fimmu.2019.01533. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55.Sorbara LR, Maldarelli F, Chamoun G, Schilling B, Chokekijcahi S, Staudt L, Mitsuya H, Simpson IA, Zeichner SL. Human immunodeficiency virus type 1 infection of H9 cells induces increased glucose transporter expression. J Virol. 1996;70(10):7275–7279. doi: 10.1128/jvi.70.10.7275-7279.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Hollenbaugh JA, Munger J, Kim B. Metabolite profiles of human immunodeficiency virus infected CD4+ T cells and macrophages using LC-MS/MS analysis. Virology. 2011;415(2):153–159. doi: 10.1016/j.virol.2011.04.007. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57.Hegedus A, Kavanagh Williamson M, Huthoff H. HIV-1 pathogenicity and virion production are dependent on the metabolic phenotype of activated CD4+ T cells. Retrovirology. 2014;11:98–98. doi: 10.1186/s12977-014-0098-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Yu L, Chen X, Wang L, Chen S. Oncogenic virus-induced aerobic glycolysis and tumorigenesis. J Cancer. 2018;9(20):3699–3706. doi: 10.7150/jca.27279. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 59.Kishimoto N, Iga N, Yamamoto K, Takamune N, Misumi S. Virion-incorporated alpha-enolase suppresses the early stage of HIV-1 reverse transcription. Biochem Biophys Res Commun. 2017;484(2):278–284. doi: 10.1016/j.bbrc.2017.01.096. [DOI] [PubMed] [Google Scholar]
- 60.Kishimoto N, Yamamoto K, Iga N, Kirihara C, Abe T, Takamune N, Misumi S. Alpha-enolase in viral target cells suppresses the human immunodeficiency virus type 1 integration. Retrovirology. 2020;17(1):31. 10.1186/s12977-020-00539-9. [DOI] [PMC free article] [PubMed]
- 61.Besnard E, Hakre S, Kampmann M, Lim HW, Hosmane NN, Martin A, Bassik MC, Verschueren E, Battivelli E, Chan J, et al. The mTOR complex controls HIV latency. Cell Host Microbe. 2016;20(6):785–797. doi: 10.1016/j.chom.2016.11.001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 62.Martin AR, Pollack RA, Capoferri A, Ambinder RF, Durand CM, Siliciano RF. Rapamycin-mediated mTOR inhibition uncouples HIV-1 latency reversal from cytokine-associated toxicity. J Clin Invest. 2017;127(2):651–656. doi: 10.1172/JCI89552. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 63.Pollizzi KN, Patel CH, Sun IH, Oh MH, Waickman AT, Wen J, Delgoffe GM, Powell JD. mTORC1 and mTORC2 selectively regulate CD8+ T cell differentiation. J Clin Invest. 2015;125(5):2090–2108. doi: 10.1172/JCI77746. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 64.Angin M, Volant S, Passaes C, Lecuroux C, Monceaux V, Dillies M-A, Valle-Casuso JC, Pancino G, Vaslin B, Le Grand R, et al. Metabolic plasticity of HIV-specific CD8+ T cells is associated with enhanced antiviral potential and natural control of HIV-1 infection. Nat Metab. 2019;1(7):704–716. doi: 10.1038/s42255-019-0081-4. [DOI] [PubMed] [Google Scholar]
- 65.Chowdhury FZ, Ouyang Z, Buzon M, Walker BD, Lichterfeld M, Yu XG. Metabolic pathway activation distinguishes transcriptional signatures of CD8+ T cells from HIV-1 elite controllers. AIDS (London, England) 2018;32(18):2669–2677. doi: 10.1097/QAD.0000000000002007. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 66.Tarancon-Diez L, Rodríguez-Gallego E, Rull A, Peraire J, Viladés C, Portilla I, Jimenez-Leon MR, Alba V, Herrero P, Leal M, et al. Immunometabolism is a key factor for the persistent spontaneous elite control of HIV-1 infection. EBioMedicine. 2019;42:86–96. doi: 10.1016/j.ebiom.2019.03.004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 67.Dietl K, Renner K, Dettmer K, Timischl B, Eberhart K, Dorn C, Hellerbrand C, Kastenberger M, Kunz-Schughart LA, Oefner PJ, et al. Lactic acid and acidification inhibit TNF secretion and glycolysis of human monocytes. J Immunol. 2010;184(3):1200–1209. doi: 10.4049/jimmunol.0902584. [DOI] [PubMed] [Google Scholar]
- 68.Chang CH, Curtis JD, Maggi LB, Jr, Faubert B, Villarino AV, O'Sullivan D, Huang SC, van der Windt GJ, Blagih J, Qiu J, et al. Posttranscriptional control of T cell effector function by aerobic glycolysis. Cell. 2013;153(6):1239–1251. doi: 10.1016/j.cell.2013.05.016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 69.Fischer K, Hoffmann P, Voelkl S, Meidenbauer N, Ammer J, Edinger M, Gottfried E, Schwarz S, Rothe G, Hoves S, et al. Inhibitory effect of tumor cell-derived lactic acid on human T cells. Blood. 2007;109(9):3812–3819. doi: 10.1182/blood-2006-07-035972. [DOI] [PubMed] [Google Scholar]
- 70.Zdzisińska B, Żurek A, Kandefer-Szerszeń M. Alpha-ketoglutarate as a molecule with pleiotropic activity: well-known and novel possibilities of therapeutic use. Arch Immunol Ther Exp. 2017;65(1):21–36. doi: 10.1007/s00005-016-0406-x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 71.Micheel CM, Nass SJ, Omenn GS. Evolution of translational omics: lessons learned and the path forward. In: Evolution of Translational Omics: Lessons Learned and the Path Forward. (Eds.) by Micheel CM, Nass SJ, Omenn GS. Washington (DC): National Academies Press (US), Copyright 2012 by the National Academy of Sciences. All rights reserved. 2012.
- 72.Hasin Y, Seldin M, Lusis A. Multi-omics approaches to disease. Genome Biol. 2017;18(1):83. doi: 10.1186/s13059-017-1215-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 73.Dhillon BK, Smith M, Baghela A, Lee AHY, Hancock REW: Systems biology approaches to understanding the human immune system. Front Immunol. 2020;11:1683. 10.3389/fimmu.2020.01683. [DOI] [PMC free article] [PubMed]
- 74.Zhang W, Ambikan AT, Sperk M, van Domselaar R, Nowak P, Noyan K, Russom A, Sönnerborg A, Neogi U. Transcriptomics and targeted proteomics analysis to gain insights into the immune-control mechanisms of HIV-1 infected elite controllers. EBioMedicine. 2018;27:40–50. doi: 10.1016/j.ebiom.2017.11.031. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 75.Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A. Proteo-transcriptomic dynamics of cellular response to HIV-1 infection. Sci Rep. 2019;9(1):213. doi: 10.1038/s41598-018-36135-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 76.Aso H, Nagaoka S, Kawakami E, Ito J, Islam S, Tan BJY, Nakaoka S, Ashizaki K, Shiroguchi K, Suzuki Y, et al. Multiomics investigation revealing the characteristics of HIV-1-infected cells in vivo. Cell Rep. 2020;32(2):107887. doi: 10.1016/j.celrep.2020.107887. [DOI] [PubMed] [Google Scholar]
- 77.••.Gelpi M, Mikaeloff F, Knudsen AD, Benfeitas R, Krishnan S, Svenssson Akusjärvi S, Høgh J, Murray DD, Ullum H, Neogi U, et al. The central role of the glutamate metabolism in long-term antiretroviral treated HIV-infected individuals with metabolic syndrome. Aging. 2021;13(19):22732–22751. doi: 10.18632/aging.203622. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 78.Svensson-Akusjärvi S, Ambikan AT, Krishnan S, Gupta S, Sperk M, Végvári Á, Mikaeloff F, Healy K, Vesterbacka J, Nowak P. Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: a cross-talk between glycolysis and HIF signaling. iScience. 2021;25(1):103607. 10.1016/j.isci.2021.103607. [DOI] [PMC free article] [PubMed]
- 79.Babu H, Sperk M, Ambikan AT, Rachel G, Viswanathan VK, Tripathy SP, Nowak P, Hanna LE, Neogi U. Plasma metabolic signature and abnormalities in HIV-infected individuals on long-term successful antiretroviral therapy. Metabolites. 2019;9(10):210. doi: 10.3390/metabo9100210. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 80.Guo H, Wang Q, Ghneim K, Wang L, Rampanelli E, Holley-Guthrie E, Cheng L, Garrido C, Margolis DM, Eller LA, et al. Multi-omics analyses reveal that HIV-1 alters CD4+ T cell immunometabolism to fuel virus replication. Nat Immunol. 2021;22(4):423–433. doi: 10.1038/s41590-021-00898-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 81.Ambikan AT, Svensson-Akusjärvi S, Krishnan S, Sperk M, Nowak P, Vesterbacka J, Sönnerborg A, Benfeitas R, Neogi U. Genome-scale metabolic models for natural and long-term drug-induced viral control in HIV-infection. Life Sci Alliance. 2022;5(9):e202201405. 10.26508/lsa.202201405. [DOI] [PMC free article] [PubMed]
- 82.Liu S, Yang J, Wu Z. The regulatory role of α-ketoglutarate metabolism in macrophages. Mediators Inflamm. 2021;2021:5577577. doi: 10.1155/2021/5577577. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 83.Minhas PS, Latif-Hernandez A, McReynolds MR, Durairaj AS, Wang Q, Rubin A, Joshi AU, He JQ, Gauba E, Liu L, et al. Restoring metabolism of myeloid cells reverses cognitive decline in ageing. Nature. 2021;590(7844):122–128. doi: 10.1038/s41586-020-03160-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 84.Pathai S, Bajillan H, Landay AL, High KP. Is HIV a model of accelerated or accentuated aging? J Gerontol A Biol Sci Med Sci. 2014;69(7):833–842. doi: 10.1093/gerona/glt168. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 85.Gelpi M, Mikaeloff F, Knudsen AD, Benfeitas R, Krishnan S, Svenssson Akusjärvi S, Høgh J, Murray DD, Ullum H, Neogi U, et al. The central role of the glutamate metabolism in long-term antiretroviral treated HIV-infected individuals with metabolic syndrome. Aging (Albany NY) 2021;13(19):22732–22751. doi: 10.18632/aging.203622. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 86.Svensson Akusjärvi S. Immunometabolic reprogramming during suppressive HIV-1 infection. Doctoral Thesis, Karolinska Institute. 2022.