Retinoic acid signaling and neurogenic niche regulation in the developing peripheral nervous system of the cephalochordate amphioxus

Abstract

The retinoic acid (RA) signaling pathway regulates axial patterning and neurogenesis in the developing central nervous system (CNS) of chordates, but little is known about its roles during peripheral nervous system (PNS) formation and about how these roles might have evolved. This study assesses the requirement of RA signaling for establishing a functional PNS in the cephalochordate amphioxus, the best available stand-in for the ancestral chordate condition. Pharmacological manipulation of RA signaling levels during embryogenesis reduces the ability of amphioxus larvae to respond to sensory stimulation and alters the number and distribution of ectodermal sensory neurons (ESNs) in a stage- and context-dependent manner. Using gene expression assays combined with immunohistochemistry, we show that this is because RA signaling specifically acts on a small population of soxb1c-expressing ESN progenitors, which form a neurogenic niche in the trunk ectoderm, to modulate ESN production during elongation of the larval body. Our findings reveal an important role for RA signaling in regulating neurogenic niche activity in the larval amphioxus PNS. Although only few studies have addressed this issue so far, comparable RA signaling functions have been reported for neurogenic niches in the CNS and in certain neurogenic placode derivatives of vertebrates. Accordingly, the here-described mechanism is likely a conserved feature of chordate embryonic and adult neural development.

Electronic supplementary material

The online version of this article (10.1007/s00018-017-2734-3) contains supplementary material, which is available to authorized users.

Introduction

To successfully interact with their environment, most multicellular animals require a peripheral nervous system (PNS) that receives and transmits sensory information as well as instructive signals from the central nervous system (CNS). In vertebrates, miss-regulation of physiological retinoic acid (RA) levels during development is associated with various behavioral defects, such as hyperactivity [1], decreased social affiliation [2], impaired vestibular and motor functions [3, 4], and intellectual disability [5]. Consistently, RA signaling has been shown to contribute to the formation of various PNS structures and sensory organs, including the eyes [6–9], the olfactory epithelium [10, 11], the otocyst that gives rise to components of the inner ear [12–14], and the enteric nervous system [15]. These data strongly suggest that the RA signaling pathway is crucially involved in overall PNS development, but information on its precise roles or on how they might have emerged in the course of animal evolution remains fragmentary [16, 17].

RA signals are chiefly transduced by heterodimers of two nuclear hormone receptors, the RA receptor (RAR) and the retinoid X receptor (RXR). These RAR/RXR heterodimers bind directly to specific DNA motifs, called retinoic acid response elements (RAREs) [18, 19]. In the absence of a ligand, the association of RAR/RXR heterodimers with a RARE generally leads to the recruitment of co-repressor complexes that mediate chromatin compaction and target gene repression [20]. Fixation of RA activates the ligand-dependent transcription factor function of the RAR/RXR heterodimer, which causes dissociation of the co-repressor complex and recruitment of a co-activator complex, thus ultimately inducing target gene transcription [21, 22].

Initially believed to be vertebrate-specific, RA has now been implicated in the neural development of various other taxa, including cnidarians [23], gastropod mollusks [24–26], tunicates [27, 28], and cephalochordates [29–32]. The latter are a slow evolving taxon that forms the sister group of all other chordates, which further include tunicates and vertebrates [33–37]. Since cephalochordates, commonly called amphioxus, have not undergone the two rounds of whole genome duplications that are typical of vertebrates [38–40], they possess only a single rar and a single rxr gene, while vertebrate genomes generally encode three rar (rarα, rarβ, and rarγ) and three rxr (rxrα, rxrβ, and rxrγ) genes [16]. Even so, it has been demonstrated that, as in vertebrates, the amphioxus RAR/RXR heterodimer can be activated by binding RA, which is necessary for establishing collinear hox gene expression patterns and for axial patterning of the nervous system [29, 31, 32, 41–43].

This is in agreement with studies showing that the CNS of amphioxus is subdivided into several territories that display homology with structures of the vertebrate CNS, including a combined dien-mesencephalon, a hindbrain, and a spinal cord [39, 44–46]. Despite these similarities, the adult amphioxus CNS is much smaller and less complex than that of vertebrates. It comprises only about 20.000 neural cells and exhibits no external structuring, apart from a caudal ampulla and serially repeated dorsal nerves that lack ganglia [45]. Taken together, these findings show that both the RA signaling cascade and the nervous system of amphioxus are simpler than those of vertebrates, but still highly comparable. Accordingly, cephalochordates are attractive models for studying the evolution of RA signaling functions and chordate neural development [16, 32, 40, 47, 48].

Apart from a dorsal neuroectoderm that undergoes neurulation to form the CNS, amphioxus embryos possess a second neurogenic domain in the ventral ectoderm, which gives rise to the PNS [49, 50]. This ventral neurogenic domain, chiefly referred to as the ectodermal sensory neuron (ESN) precursor field, is thought to be related to vertebrate cranial placodes and becomes specified at the late gastrula stage, when the homeobox transcription factor tlx (T cell leukemia homeobox) starts to be expressed along the midline of the ventral ectoderm [39, 50, 51]. Initially, tlx is widely expressed, but gradually becomes restricted to individual ESN progenitors (ESNPs) that delaminate into the sub-ectodermal space to migrate dorsally [49]. At the flanks of the embryo, the ESNPs downregulate tlx expression, reinsert their soma into the ectoderm and differentiate [49]. Notably, the number of ESNs has been reported to increase during subsequent larval development [45], but it is currently unclear whether the migrating ESNPs are able to divide or if another neurogenic niche for the generation of peripheral neurons exists in the amphioxus larva.

Different types of ESNPs can be distinguished according to their expression of distinct sets of neural marker genes, which become induced during their migration. Both tlx and hu/elav are probably expressed in all ESNPs, but tlx expression is eliminated from most cells as they differentiate [49, 52]. Other genes, such as eya, six1/2, soxb1c, err, islet, coe, and different hox genes, are only expressed in specific subsets of ESNPs, with eya, six1/2, and soxb1c being confined to late-developing ESNPs in the mid-trunk ectoderm [29, 51, 53, 54]. On a morphological level, two main types of ESNs are discernible, the so-called type I and type II neurons. Primary type I ESNs develop early in the rostrum and tail, from where their axons enter the neural tube and travel long distances within it, to make repeated synaptic contacts with ventral interneurons involved in locomotory control [45, 55]. More specialized type I ESNs may exhibit a modified, spine-like cilium, while type II ESNs possess a collar of branched microvilli and probably function as chemoreceptors [45]. In addition, amphioxus ESNs may exhibit different neurotransmitter phenotypes, including mostly glutamatergic, but also GABAergic cells [56]. It is currently unclear how these different types of ESNs become specified, but the RA signaling pathway is likely to be involved, since it regulates amphioxus hox gene expression in the ectoderm and was shown to influence the anterior–posterior positioning of ESNPs expressing the neural marker genes err, islet, and coe [29].

Given the general importance of RA signaling for neurobehavioral and PNS development in vertebrates, we decided to investigate how the RA pathway contributes to these processes in amphioxus (Branchiostoma lanceolatum). We thus first altered RA signaling levels at selected embryonic stages using pharmacological treatments with either the RAR antagonist BMS493 or with exogenous all-trans RA. Next, we examined proper functioning of the amphioxus PNS through behavioral tests for mechano- and chemoreception. The obtained data show that disruption of endogenous RA signaling levels reduces the ability of amphioxus larvae to respond to sensory stimulation in a stage-dependent manner. To determine, whether this is due to defective PNS formation, we documented neurogenesis of ESNs through immunohistochemistry against the neuronal marker acetylated tubulin (AT) and the very abundant neurotransmitter glutamate (GLU). We found that RA signaling levels act in a strictly stage-dependent manner to regulate the number and distribution of ESNs. In an effort to elucidate, how this was achieved, we used proliferation and apoptosis assays as well as in situ hybridization approaches targeting the neural marker genes hu/elav, tlx, and soxb1c. Importantly, our results reveal that RA signaling mainly acts on a small late-developing population of soxb1c-expressing ESNPs in the trunk ectoderm to modulate ESN production. This neurogenic niche is most likely responsible for supplying new ESNs as the amphioxus larva elongates. Comparable RA signaling functions have previously been reported in neurogenic niches of both the vertebrate CNS and PNS, suggesting that this mechanism is evolutionary conserved among chordates.

Materials and methods

Animals

European amphioxus (B. lanceolatum) adults were collected from sand samples retrieved in Argelès-sur-Mer, France. About 10 animals were kept in 5 l aquaria with a water temperature of 16–17 °C and a periodical light cycle of 14 h light and 10 h darkness. To induce spawning, selected males and females were exposed to a 36-h thermal shock at 23 °C, as previously described [57–59]. From each female, several hundred eggs were collected in a Petri dish. After successful in vitro fertilization, the developing zygotes were incubated in artificial seawater (Red Sea Salt, Verneuil-sur-Avre, France) at 19 °C in the dark [60].

Pharmacology

Embryos of B. lanceolatum were treated with the RAR antagonist BMS493 at a concentration of 1 µM or with all-trans RA at a concentration of 0.1 µM. Both compounds were purchased from Sigma-Aldrich (Saint-Quentin Fallavier, France) and were dissolved in dimethyl sulfoxide (DMSO) (Sigma-Aldrich, Saint-Quentin Fallavier, France) to create 1000× stock solutions, which were added to 10 ml B. lanceolatum embryo cultures, at the respective final concentrations. In addition, control cultures were treated with DMSO at a final concentration of 1:1000 [41]. Pharmacological treatments began either at the late blastula (6 h post fertilization, hpf), mid-gastrula (12 hpf) or mid-neurula (24 hpf) stage.

Behavioral analyses

For each behavioral experiment, amphioxus larvae at 48 hpf were transferred into a Petri dish containing 10 ml (mechanoreception) or 2.5 ml (chemoreception) of artificial seawater. Next, the animals were left under a stereomicroscope to acclimatize for 15 min and their behavior was filmed using a Hamamatsu Flash4 camera. To test for mechanoreception, larvae were gently touched with the tip of a plastic Pasteur pipette (Additional file 1: Movie S1). To create a small flexible tip that could be used to touch the larvae without damaging them, the thin end of a plastic Pasteur pipette was heated over a low flame and slowly elongated until its radius was about 0.15 mm. Before use, the pipette was washed several times with artificial seawater. For each treatment condition, n = 50 larvae were filmed and their responses were classified and counted (Fig. 1). To test for chemoreception, a small block of low-melting agarose (5 × 5 × 5 mm) (Sigma-Aldrich, Saint-Quentin Fallavier, France), dissolved in either artificial seawater (negative control) or in artificial seawater containing 0.1 M l-GLU, was placed into a Petri dish containing 2.5 ml of artificial seawater and 50 amphioxus larvae (Fig. 2a). Subsequently, the larvae were filmed for 10 min and their movements were tracked using the MTrackJ plugin of the ImageJ software (Fig. 2a) [61]. For each treatment condition, the experiment was repeated five times and the behavior of n = 50 larvae, which passed the agarose block within a 1 cm radius and within 1–10 min after introduction of the agarose block, were classified and counted (Fig. 2b, c; Additional file 2: Movie S2). Furthermore, the number of circles a larva would swim without interruption was counted for as many animals as possible (n = indicated in Additional file 3: Figure S1).

Fig. 1.

Effects of retinoic acid (RA) signaling alterations on mechanoreception in amphioxus larvae. Amphioxus embryos were exposed to DMSO (control), the RA receptor (RAR) antagonist BMS493 or all-trans RA, starting from the treatment time points (t): 6 or 24 hpf (hours post fertilization). For each treatment condition, the responses of n = 50 larvae at the 48 hpf stage to a mechanical stimulus were assessed and counted. The response A (dark green) corresponds to a quick muscular swimming movement away from the stimulus and was shown by all control animals, the response B (light green) to an intense wiggling and bending movement without clear directionality, the response C (yellow) to a short wiggling motion on the spot, the response D (orange) to short disconnected twitches or bends on the spot, and the response E (red) to no visible movement or reaction

Fig. 2.

Effects of retinoic acid (RA) signaling alterations on glutamate chemoreception in amphioxus larvae. a Experimental setup. Starting from treatment time points (t) at 6 or 24 hpf (hours post fertilization), embryos were exposed to DMSO (control), the RA receptor antagonist BMS493 or all-trans RA. Upon reaching the 48 hpf stage, larvae from each treatment condition were transferred into separate Petri dishes (black circles) containing 2.5 ml of artificial seawater. Next, a block of low-melting agarose (grey squares), which had either been dissolved in artificial seawater (no glutamate) or in artificial seawater containing 0.1 M l-glutamate, was placed into each Petri dish. Reactions of the animals were filmed for 12 min. For subsequent analyses, only larvae that passed the agarose block within a 1 cm radius and within 0.5–10 min after introduction of the agarose block were considered. Colored lines depict the trajectories of five randomly selected larvae. Dotted lines and fat lines, respectively, represent slow ciliary and fast muscular swimming. Arrowheads indicate the direction of the swimming movement. b Muscular swimming events were counted for n = 50 larvae per treatment condition. In the pie charts, the size of an individual slice corresponds to the percentage of animals that exhibited a given number of swimming events (i.e., 0 = no muscular swimming, 1 = a single event of muscular swimming, 2 + = two or more events of muscular swimming). c Swimming patterns were assessed and counted for n = 50 animals per treatment condition. Three types of swimming patterns were distinguished: A = swimming in straight lines or wide angles, B = swimming in straight lines or wide angles plus periods of circling/spiraling, and C = circling/spiraling for the entire observation period. In the pie charts, the size of an individual slice indicates the percentage of animals exhibiting a given swimming pattern

Sequence identification, phylogenetic analyses, and gene cloning

The sequences for hu/elav, tlx, and soxb1c were identified in the available B. lanceolatum sequence data [62] through tBLASTn searches using as queries the Homo sapiens protein sequences of ELAV1, ELAV2, ELAV3, ELAV4 (respectively, NP_001410.2, NP_004423.2, NP_001411.2, NP_068771.2), TLX1, TLX2, TLX3 (respectively, NP_005512.1, NP_057254.1, NP_066305.2), and SOX1, SOX2, SOX3 (respectively, NP_005977.2, NP_003097.1, NP_005625.2). Subsequently, the obtained candidate B. lanceolatum hu/elav, tlx, and soxb1c sequences were translated into proteins and the sequences of their potential orthologs were recovered from Homo sapiens, Gallus gallus, Strongylocentrotus purpuratus, Drosophila melanogaster, Tribolium castaneum, and B. floridae (for accession numbers, see Additional file 4: Table S1). All sequences were aligned using the MUSCLE program with default parameters [63]. Positions in the alignment with more than 75% gaps were removed using the −gt = 0.25 parameter from TrimAl v1.2 [64]. The final alignment of the 15 HU/ELAV sequences comprised 377 residues, the final alignment of the 11 TLX sequences comprised 330 residues, and the final alignment of the 13 SOX sequences comprised 384 residues. Maximum-likelihood phylogenies were inferred using RAxML with 1000 rapid bootstraps [65]. The best-suited model to each alignment was determined using Protest v3.4 [66], which yielded: JTT + Γ + I for HU/ELAV, DCmut + Γ + I for TLX, and DCmut + Γ + I for SOX. The resulting trees (Additional file 5: Figure S2a, b, c) validated the B. lanceolatum hu/elav, tlx, and soxb1c sequences as true homologs of their B. floridae counterparts.

To clone the open reading frames of B. lanceolatum hu/elav, tlx, and soxb1c, RNA was extracted from B. lanceolatum embryos and larvae at different developmental stages (18, 24, 36, and 48 hpf), according to established protocols [67], and cDNA was synthesized using the SuperScriptIII reverse transcription kit from Invitrogen (Cergy Pontoise, France). Next, the open reading frames of the B. lanceolatum hu/elav (KY569299), tlx (KY569298), and soxb1c (KY569300) genes were amplified by polymerase chain reaction (PCR), using the obtained embryonic cDNA and gene-specific primers: 5′-GTTAGCGGCACAGACTCCGAAGAGCG-3′ and 5′-CTGCCGTGTTTGCCCGCGTACAATTGG-3′ for hu/elav, 5′-ATGGTTGGCATCATGGAATCGGAG-3′ and 5′-TAGCAGATCGTTGGCGTGGTGAG-3′ for tlx, and 5′-GGTGTGGTCACGCGGACAGCGCCG-3′ and 5′-CGCGCGGGAAACTTGTATCCG-3′ for soxb1c. The PCR products were cloned into the pGEM^®-T Easy Vector System from Promega (Charbonnières-les-Bains, France) and the open reading frames subsequently validated by sequencing on both DNA strands.

In situ hybridization and immunohistochemistry

For whole mount in situ hybridization and immunohistochemistry, B. lanceolatum embryos were fixed at different developmental stages in freshly prepared ice-cold 4% paraformaldehyde diluted in MOPS buffer [68]. Antisense riboprobes were synthesized and in situ hybridization experiments were carried out as previously described [68]. For immunohistochemistry, fixed embryos were transferred into the wells of a 96-well plate and washed in several changes of PBS (phosphate buffered saline, 0.1 M, pH 7) for 1 h, followed by a pre-incubation in PBS-TX (PBS plus 0.3% Triton X-100) for 1 h. Next, the embryos were incubated in primary antibodies diluted in PBS-TX. All embryos were stained for AT (Sigma-Aldrich, Saint-Quentin Fallavier, France, T6793, concentration 2:1000) and GLU (Sigma-Aldrich, Saint-Quentin Fallavier, France, G6642, concentration 3:1000) for 72 h at 4 °C. The primary antisera were washed off with several changes of PBS for 2 h and the embryos were then incubated in the secondary antibodies anti-rabbit IgG Alexa Fluor^®488 (Fisher Scientific, Illkirch-Graffenstaden, France, A-11008, concentration 3:1000) and anti-mouse Cy3™ (Bethyl Laboratories Inc., Montgomery, USA, A90-516C3, concentration 3:1000) as well as in the nucleic acid dye Hoechst (bisBenzimide, Invitrogen, Cergy Pontoise, France, concentration 1:5000), diluted in PBS, for 12 h at 4 °C. Subsequently, the embryos were washed once more for 2 h in several changes of PBS and mounted in Mowiol (Sigma-Aldrich, Saint-Quentin Fallavier, France).

Proliferation and apoptosis assays

For the EdU cell proliferation assay, the Click-iT^® Plus EdU Alexa Fluor^® 647 Imaging Kit from Fisher Scientific (Illkirch-Graffenstaden, France) was used. For EdU incorporation, B. lanceolatum neurula stage embryos (at 24 hpf) were exposed to 50 µM EdU in artificial seawater for 4 h. Next, the embryos were washed with five changes of artificial seawater and left to develop until the feeding larva stage (36 hpf), when they were fixed with freshly prepared ice-cold 4% paraformaldehyde diluted in MOPS buffer [68]. The EdU labeling reaction was performed according to the manufacturer’s description. For subsequent immunohistochemistry, EdU-labeled embryos were washed in several changes of PBS for 1 h and then processed as described above.

For the TUNEL apoptosis assay, the ApopTag^® Peroxidase In Situ Apoptosis Detection Kit from Merck Millipore (Molsheim, France) was used. Since a strong background staining occurred in early B. lanceolatum embryos, larval stages (at 60 hpf) were used to detect apoptotic cells by TUNEL labeling. The whole mount detection of apoptosis in amphioxus was performed as previously described [69]. Digoxigenin-conjugated nucleotides incorporated into the free 3′OH DNA termini of apoptotic cells were detected using the anti-digoxigenin antibody conjugated with alkaline phosphatase from Roche (Meylan, France, 11093274910). For the chromogenic reaction, Fast Red RC Tablets from Sigma-Aldrich (Saint-Quentin Fallavier, France) were used, according to manufacture’s instructions. The chromogenic reaction was stopped after 10 min by washing the embryos in five changes of PBS and mounting them in Mowiol (Sigma-Aldrich, Saint-Quentin Fallavier, France).

Imaging and image analyses

Images of B. lanceolatum embryos after single in situ hybridization were taken as whole mounts using Zeiss differential interference contrast optics (Carl Zeiss SAS, Marly-le-Roi, France). All other imaging work was carried out on a Leica TCS SP5 confocal microscope (Leica Microsystems SAS, Nanterre, France). After TUNEL labeling, the Fast Red signal was excited at 514 nm (Argon laser) and detected at 560–600 nm. For immunostained embryos, the Cy3™ signal was excited at 543 nm (HeNe laser) and detected at 560–580 nm, the Alexa Fluor^®488 signal was excited at 488 nm (Argon laser) and detected at 515–540 nm and the Hoechst signal was excited at 405 nm (Diode laser UV) and detected at 430–460 nm. For in situ hybridization/immunohistochemistry co-localization, the NBT/BCIP signal was excited at 633 nm (HeNe laser) and detected at 660–680 nm. Series of optical sections were taken at a z-step interval of 0.8 µm. The ImageJ software was subsequently used to generate maximum projections and for further image processing [61]. Cell numbers were counted manually and statistical significance was assessed using two-tailed Student’s t-tests assuming unequal variances.

Results

Manipulation of retinoic acid signaling levels during development negatively impacts motor- and mechanosensory functions in amphioxus larvae

Following pharmacological treatment at either 6 or 24 hpf with either the RAR antagonist BMS493 or exogenous all-trans RA, several aspects of larval behavior were examined. All behavioral tests were carried out at the 48 hpf stage, when the larvae display a rich repertoire of sensory and motor functions as well as a high level of activity [70].

To test their responsiveness to mechanical stimulation, amphioxus larvae were touched laterally with the small flexible tip of a plastic pipette (d = 0.3 mm) and their reactions were filmed (Additional file 1: Movie S1). All control larvae reacted by quickly swimming away from the mechanical stimulus, using fast muscular swimming rather than slow ciliary swimming [70]. In contrast, larvae that have been subjected to alterations of endogenous RA signaling levels during their development showed a variety of different responses (Fig. 1; Additional file 1: Movie S1), which were scored as follows: (A) muscular swimming away from the stimulus, (B) intense wiggling and bending motions that resemble muscular swimming but without clear directionality, (C) short wiggling motions, (D) disconnected twitches/bends, and (E) no muscular response/ciliary swimming. For larvae that have been treated with the RAR antagonist BMS493 starting from 6 hpf, the full range of possible responses could be observed, with most animals responding in a slightly reduced fashion (reaction B, Fig. 1). Interestingly, later BMS493 treatments, at 24 hpf, led to a more severe reduction of larval responsiveness. None of the larvae swam away (response A) and half did not react at all (response E), even though they were generally capable of muscular swimming, which could be induced through more severe stimulation, e.g., by sucking animals up and down a plastic pipette several times.

When treated with RA starting from 6 hpf, the larvae were not capable of muscular swimming. If stimulated, they only exhibited disrupted muscular wiggling or twitching movements. In addition, their responsiveness to mechanical stimulation was reduced, with almost half of the larvae showing only brief twitches or no reaction at all. For the late RA treatment, at 24 hpf, all larvae were capable of muscular swimming. Yet, about half of them reacted in a reduced fashion or not at all when touched, while the other half would swim away normally (response A). Taken together, these data show that alteration of RA signaling levels perturbs both motor- and mechanosensory functions in amphioxus larvae. Notably, the latter were more severely affected, if RA signaling levels were manipulated at late developmental stages (24 hpf).

Manipulation of retinoic acid signaling levels during development negatively impacts chemosensory functions in amphioxus larvae

In vertebrates, GLU is the most abundant excitatory neurotransmitter and contributes to most nervous system functions [71]. Therefore, the swimming patterns of amphioxus larvae were tracked and analyzed under normal conditions as well as in response to GLU exposure as a chemical stimulus (Fig. 2a; Additional file 2: Movie S2).

In the absence of exogenous GLU, control larvae swam via ciliary movement and only rarely exhibited short spontaneous phases of muscular swimming (Fig. 2a, b). Pharmacological treatments had no effect on the occurrence of spontaneous phases of muscular swimming under these conditions. However, larvae treated with RA at 6 hpf showed an impaired muscular swimming motion that was observed slightly less often than in the control (Fig. 2b). The trajectories of control larvae mostly followed straight lines or relatively wide angles and were occasionally interrupted by periods of circling/spiraling (Fig. 2a, c). This circling/spiraling behavior was more common among larvae treated with BMS493 at either 6 or 24 hpf, but less common among larvae treated with RA at 6 hpf (Fig. 2a, c).

In the presence of an agarose block containing l-GLU, most control larvae used muscular swimming to quickly move away from the l-GLU source, whenever they came too close to it (Fig. 2a). Thus, l-GLU exposure increased the occurrence of muscular swimming phases (Fig. 2b), but slightly decreased periods of circling/spiraling (Fig. 2c). Most pharmacological treatments did not affect the ability of amphioxus larvae to react to l-GLU exposure with increased muscular swimming (Fig. 2a, b). Only larvae treated with BMS493 at 24 hpf did not react with a clear increase in muscular swimming when exposed to exogenous l-GLU (Fig. 2b). Instead, the circling/spiraling behavior that was already increased under normal conditions in larvae treated with BMS493 at either 6 or 24 hpf became even more intense (Fig. 2c; Additional file 3: Figure S1).

Accordingly, treatments with BMS493 or RA biased ciliary swimming in amphioxus larvae towards or against circling/spiraling, respectively. Furthermore, late BMS493 treatments, starting from 24 hpf, clearly reduced larval responsiveness to l-GLU as a chemical stimulus. In sum, altering RA signaling levels during amphioxus development negatively impacts larval responsiveness to both mechanical and chemical stimulation, suggesting that RA signaling is required for establishing a functional PNS.

Roles of retinoic acid signaling during differentiation of the amphioxus peripheral nervous system

Since our data indicate that RA signaling contributes to the acquisition of sensory functions in amphioxus larvae, we next wanted to determine whether it also affects PNS formation. To this end, we first documented the development of ESNs, using immunohistochemistry against the neuronal marker AT and the neurotransmitter GLU.

At all developmental stages investigated, AT immunoreactivity (AT-ir) was present in numerous cilia of both the ectoderm and endoderm. By 15 hpf (early neurula stage), GLU immunoreactivity (GLU-ir) and AT-ir became visible in the area of the neuropore (Fig. 3a). In late neurulae, at 24 hpf, this signal was expanded throughout the entire neural tube, including the chordoneural hinge (Fig. 3b). By 30 hpf, ESNs differentiated along the ventro-lateral ectoderm of the early larva, with each ESN projecting a single axon into the neural tube (Fig. 3c). GLU-ir was weak and confined to the somata of these early ESNs, suggesting that they were not yet fully matured. By 36 hpf, however, the amphioxus feeding larva possessed on average 42 ESNs (σ = 7.1; n = 10), all of which displayed strong GLU-ir within both their somata and neurites (Fig. 3d). Thus, GLU neurotransmission was most likely functional at this stage. Along the anterior–posterior axis of the animals, ESNs were segmentally arranged into groups of one to four cells that generally projected their axons into the same spot within the neural tube. These projections were evenly spaced, in a manner correlated with the somite borders, indicating a corresponding segmentation of the amphioxus CNS, PNS, and mesoderm [50]. Although no external structuring is visible along the amphioxus neural tube, apart from a small bulbous cerebral vesicle [45], numerous genes are expressed in iterated segmental patterns associated with the position of the underlying somites [72]. Resembling the situation in vertebrates, the hindbrain-like domain of the amphioxus neural tube thus appears to be subdivided into a series of neuromeres that are more or less aligned with the somites and receive sensory inputs from a corresponding series of ESNs.

Fig. 3.

Development of ectodermal sensory neurons (ESNs) in amphioxus. All animals were stained with an antibody against glutamate (GLU, green), an antibody against acetylated tubulin (AT, red), and the nucleic acid dye Hoechst (blue). a Dorsal view and b–j lateral views of amphioxus larvae at different developmental stages, from 15 to 108 hpf (hours post fertilization). Anterior ends are directed towards the right. e–g Close-ups featuring a group of ESNs in an amphioxus larva at 36 hpf. e, f Single, color-inverted, fluorescent signal for AT-ir and GLU-ir, respectively. Arrowhead in f indicates the finger-shaped apex and fine dendrites of a type II ESN. h–j Dotted boxes indicate densely clustered ESNs in the mid-trunk ectoderm of late amphioxus larvae. Arrowheads in i indicate AT-positive, but GLU-negative, ESNs. Abbreviations: ch, chordoneural hinge; np, neuropore. Scale bar in a also applies to b–d, scale bar in e also applies to f, g and scale bar in h also applies to i, j

Most of the observed ESNs extended fine neurites across the surface of the ectoderm. In addition, several ESNs exhibited a finger-shaped element at their apex (Fig. 3e–g), indicative of an elongated microvilli collar, which is characteristic of putative chemosensory type II ESNs (Fig. 3e–g, arrowhead in f) [45, 73]. However, so far, type II ESNs have only been described in much later larval stages and as secondary sensory neurons, which possess multiple short basal processes [45, 73]. In contrast, our type II-like ESNs are primary sensory neurons with a single axon that enters the nerve cord. In late larvae, between 48 and 108 hpf, the number of ESNs increased to between 70 and 90 and a conspicuously high density of ESNs became apparent in the mid-region of the larval trunk ectoderm (Fig. 3h–j, dotted boxes). Contrary to early larvae, late larvae also possessed GLU-negative ESNs (Fig. 3i, arrowheads), with the majority of GLU-ir ESNs being located in the mid-trunk ectoderm. Besides ESNs, GLU-ir cells were further found around the orifices of late larvae, such as the pre-oral pit, the mouth, the gill slit, and the anus. However, these cells did not project processes into the CNS and were thus not considered as ESNs. Instead, some of them might belong to an independent visceral nervous system that innervates oral structures in the amphioxus larva [32, 74].

We next assessed how pharmacological manipulation of RA signaling levels at 6, 12 or 24 hpf affects ESN formation. To quantify and compare the distribution of GLU/AT-ir ESNs, amphioxus larvae at 36 hpf were subdivided along their anterior–posterior axis into three territories of equal size. In control animals, the anterior part comprised on average 15, the middle part 11, and the posterior part 16 ESNs (Fig. 4a, a′, e, e′, i). Animals that were treated with BMS493 at 6 hpf did not exhibit any significant changes in the number and distribution of their ESNs. In contrast, animals that were treated with RA at 6 hpf possessed significantly more ESNs in their anterior and middle parts, but less in their posterior part (Fig. 4b, b′, f, f′, i). The overall amount of ESNs in these animals did, however, not change significantly. Accordingly, early alterations of RA signaling levels only affected the anterior–posterior position of ESNs. Later treatments, at 12 hpf, on the other hand, significantly increased the overall number of ESNs, either in middle and posterior parts for BMS493 treatments or in anterior and middle parts for RA treatments (Fig. 4c, c′, g, g′, i). Treatments that began even later, at 24 hpf, caused an even greater increase in the overall amount of ESNs (Fig. 4d, d′, h, h′, i). Notably, a higher number of ESNs was again observed in middle and posterior parts for BMS493 treatments at 24 hpf, and all along the anterior–posterior axis for RA treatments at 24 hpf. To corroborate these findings, we also investigated how manipulation of RA signaling levels influences the expression of vglut, a marker gene of glutamatergic neurons. These experiments led to results consistent with those obtained by assaying the distribution of GLU/AT-ir ESNs (Additional file 6: Figure S3). Accordingly, our data demonstrate that RA signaling regulates ESN formation in a stage- and tissue-dependent manner.

Fig. 4.

Effects of retinoic acid (RA) signaling alterations on the development of ectodermal sensory neurons (ESNs) in amphioxus. a–d′ Larvae at 36 hpf (hours post fertilization) were stained for glutamate-immunoreactivity (GLU-ir, green), acetylated tubulin-ir (AT-ir, red), and with the nucleic acid dye Hoechst (blue). e–h′ Schematic drawings of the animals shown in a–d′. Outlines of the animals and their pre-oral pits are depicted in grey, the gut in bright yellow, and neural projections in red. ESNs are depicted as circles with a red outline that are filled with either green or yellow color to represent the presence or absence of GLU-ir, respectively. Animals had been treated with either DMSO (control, a, a′, e, e′), with the RA receptor (RAR) antagonist BMS493 (b–d, f–h), or with all-trans RA (b′–d′, f′–h′), starting from different treatment time points (t), at either 6, 12 or 24 hpf, as indicated. i Statistical analyses of the observed effects of RA signaling alterations on ESN formation. Colored bars depict the average number of ESNs in the whole ectoderm (all) or in specific ectodermal sections along the anterior–posterior axis. The image below the first diagram shows Hoechst labeling (grey) in a larva at 36 hpf, with dotted lines marking the sections of the ectoderm (posterior, middle, anterior), in which ESNs were counted. Green bars stand for control animals, blue bars for animals treated with BMS493, and red bars for animals treated with all-trans RA. For each diagram, treatment time points (t), at 6, 12 or 24 hpf, are given in the upper right corner and the number (n) of animals counted per condition is indicated at the base of the first three colored bars. Error bars depict the standard deviation (σ). An asterisk (*) above an error bar indicates that the difference between this condition and the corresponding control is statistically significant. The scale bar in a also applies to b–d, a′–d′, and the scale bar in e also applies to f–h, e′–h′

Roles of retinoic acid signaling in ectodermal cell proliferation and apoptosis

In an effort to understand how RA signaling modulates ESN development in amphioxus, we next tested how altering RA signaling levels at either 6 or 24 hpf influences ectodermal cell proliferation and apoptosis.

Using the 5-ethynyl-2′-deoxyuridine (EdU) labeling technique, we thus assessed cell proliferation during a specific developmental timeframe. In amphioxus larvae exposed to EdU from 24 to 28 hpf and fixed at 36 hpf, most EdU-positive nuclei were observed in the gut, but were also detectable in the cerebral vesicle, in the posterior neural tube, and dispersed across the ectoderm (Fig. 5). The labeled nuclei exhibited different signal intensities, due to signal dilution, which occurs in cells that kept dividing after the 4 h EdU pulse. Accordingly, cells with strongly labeled nuclei proliferated during the EdU pulse, whereas cells with weakly labeled nuclei underwent additional divisions after the EdU pulse. Most ectodermal nuclei showed weak EdU labeling, indicating continuous proliferative activity after the EdU pulse. On average 49 EdU-positive nuclei were detected within the ectoderm of control larvae (σ = 10; n = 15) (Fig. 5a, b, b′, e). The majority of these nuclei were located in the anterior and tail region of the larvae, while only very few were found in the mid-trunk region. RA treatments at 6 and 24 hpf had no significant effect on the number or distribution of ectodermal EdU-positive nuclei (Fig. 5c′, d′, e). In contrast, treatments with BMS493 at both 6 and 24 hpf led to a significant increase in ectodermal EdU-positive nuclei, especially in the anterior part of the larvae (Fig. 5c–e). These results suggest that RA signaling functions during amphioxus development to limit cell proliferation in the larval ectoderm.

Fig. 5.

Effects of retinoic acid (RA) signaling alterations on cell proliferation in the ectoderm of amphioxus larvae. a–d′ Animals at 36 hpf (hours post fertilization) are shown in lateral view with their anterior ends directed towards the right. a Larva that was stained for 5-ethynyl-2′-deoxyuridine (EdU, yellow), for glutamate-immunoreactivity (GLU-ir, green), for acetylated tubulin-ir (AT-ir, red), and with the nucleic acid dye Hoechst (blue). b–d′ Images showing only the color-inverted fluorescent signal for EdU (grey). a–b′ Control animals treated with DMSO. c, d Animals treated with the RA receptor (RAR) antagonist BMS493. c′, d′ Animals treated with all-trans RA. The treatment time points (t), at either 6 or 24 hpf, are given in the upper right corner of each image. e Statistical analyses of the observed effects of RA signaling alterations on ectodermal cell proliferation. Colored bars depict the average number of EdU-positive nuclei present in the whole ectoderm (all) or in specific ectodermal sections along the anterior–posterior axis. The image below the first diagram shows Hoechst labeling (grey) in a larva at 36 hpf, with dotted lines marking the sections of the ectoderm (posterior, middle, anterior), in which EdU-positive nuclei were counted. Green, blue, and red bars stand, respectively, for control animals, for animals treated with BMS493, and for animals treated with all-trans RA. For each diagram, treatment time points (t), at either 6 or 24 hpf, are given in the upper right corner, and the number (n) of animals that were counted per condition is indicated at the base of the first three colored bars. Error bars depict the standard deviation (σ). Asterisks (*) above error bars indicate that the difference between this condition and the corresponding control is statistically significant. The scale bar in b also applies to c, d, b′–d′

Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assays can be used to reveal DNA fragmentation, which occurs during the late stages of apoptosis. In amphioxus larvae at 60 hpf, apoptotic cells were present at the rostral end of the animals, in the vicinity of the mouth and gill slit, and in individual patches that were dispersed across the ectoderm (Fig. 6a). BMS493 treatments at 6 hpf resulted in an increase of apoptotic cells within the general ectoderm of amphioxus larvae that was not seen for late BMS493 treatments, at 24 hpf (Fig. 6b, c). Conversely, animals treated with RA at 6 hpf showed no apparent changes in the amount or distribution of apoptotic cells within their ectoderm (Fig. 6b′). If RA treatments began later, at 24 hpf, fewer apoptotic cells were visible in the general ectoderm, with most apoptotic cells occupying the area of the anterior pharynx (Fig. 6c′). Thus, RA signaling seems to promote ectodermal cell survival in amphioxus larvae. In sum, these findings show that RA signaling reduces the proliferation and promotes the survival of ectodermal cells in amphioxus larvae. However, it was not possible to establish a clear correlation between these functions and the observed RA signaling-dependent regulation of ESN formation.

Fig. 6.

Effects of retinoic acid (RA) signaling alterations on apoptosis in amphioxus larvae. Animals at 60 hpf (hours post fertilization) were stained with a terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) kit for apoptotic cells (yellow) and with the nucleic acid dye Hoechst (blue). All larvae are shown in lateral view with their anterior ends directed towards the right. a Control animal that was treated at 6 hpf with DMSO. b, c Animals that were treated with the RA receptor (RAR) antagonist BMS493 at two different developmental stages, 6 or 24 hpf. b′, c′ Animals that were treated with all-trans RA at two different developmental stages, 6 or 24 hpf. The treatment time point (t) is given in the upper right corner of each image. Scale bar in a applies to all images

Formation of the amphioxus peripheral nervous system from at least two distinct populations of ectodermal sensory neuron progenitors

To better understand ESN formation in amphioxus, we decided to compare the number and distribution of ESNPs expressing different neural marker genes. Since the developmental expression of hu/elav, tlx, and soxb1c in B. lanceolatum largely corresponded to that previously described in other amphioxus species [49–52, 75], the following sections will focus exclusively on the expression of these neural marker genes in B. lanceolatum ESNPs.

Expression of the neuron-specific RNA binding protein hu/elav became visible in individual ESNPs at about 18 hpf (Additional file 7: Figure S4a, a′, b, b′). Initially, these hu/elav-expressing ESNPs were located in the ventral ectoderm of the mid-neurula stage embryo. As development proceeded, the number of hu/elav-positive ESNPs increased and their location changed from ventral to lateral ectoderm (Additional file 7: Figure S4c, c′, d, d′, e, e′). During early larval stages, between 30 and 36 hpf, hu/elav-expressing ESNPs were evenly dispersed along the anterior–posterior axis, excepting a conspicuously dense accumulation in the mid-region of the trunk (Additional file 7: Figure S4d, d′, e, e′). Notably, this is consistent with the above-described particularly high density of GLU/AT-ir ESNs in the mid-trunk area of later larval stages, between 48 and 108 hpf (Fig. 3h–j).

The nuclear transcription factor tlx was already expressed throughout the ventral ectoderm of early amphioxus neurulae, at 15 and 18 hpf (Additional file 8: Figure S5a, a′, b, b′). By 24 hpf, this ectodermal tlx expression became confined to individual ESNPs (Additional file 8: Figure S5c, c′). Importantly, however, less tlx-expressing ESNPs than hu/elav-expressing ESNPs were observed (Additional file 8: Figure S5c, c′, d, d′, e, e′). As for the majority of hu/elav-expressing ESNPs, tlx-expressing ESNPs were evenly dispersed along the lateral ectoderm of amphioxus larvae at 30 and 36 hpf (Additional file 8: Figure S5d, d′, e, e′). But contrary to hu/elav-expressing ESNPs, no accumulation of tlx-expressing ESNPs was observed in the mid-trunk region of the larvae (Additional file 8: Figure S5d, d′, e, e′). Taken together, these data indicate that tlx is only expressed in a subset of amphioxus ESNPs, because in the mid-trunk area of late neurulae and larvae a dense accumulation of ESNPs can be detected by hu/elav, but not by tlx expression.

The HMG-box transcription factor soxb1c only became expressed in a few ESNPs by the late neurula stage, at 24 hpf (Additional file 9: Figure S6a, a′, b, b′, c, c′). Between 30 and 36 hpf, the number of soxb1c-expressing ESNPs increased from about four to about seven on each side of the developing larva (Additional file 9: Figure S6d, d′, e, e′). Notably, all of them were localized in the mid-trunk region, where a particularly dense accumulation of ESNPs was labeled by hu/elav, but not by tlx expression. Since tlx-expressing ESNPs are positioned slightly more ventral within the lateral ectoderm than soxb1c-expressing ESNPs, these two genes likely mark distinct populations of ESNPs. In addition, our data indicate a link between the soxb1c-expressing ESNPs and the conspicuous accumulation of GLU/AT-ir ESNs in the mid-trunk ectoderm of amphioxus larvae.

To further scrutinize the respective distribution of hu/elav-, tlx-, and soxb1c-expressing ESNPs, we next co-localized the expression of each of these genes with GLU- and AT-ir, which labels mature ESNs in amphioxus larvae at 36 hpf. Expression of hu/elav was visible in all differentiated ESNs as well as in undifferentiated ESNPs in the mid-trunk region of the larva (Fig. 7a, a′). In contrast, tlx expression was only observed in a subset of differentiated ESNs (Fig. 7b, b′), and soxb1c was exclusively expressed in undifferentiated ESNPs that were concentrated in the mid-trunk region of the larva (Fig. 7c, c′). The larval amphioxus PNS thus appears to develop from at least two distinct populations of ESNPs: one that arises during early neurula stages (15–18 hpf) from the ventral ectoderm and expresses tlx, and another one that arises during later neurula stages (18–24 hpf) in the lateral ectoderm and expresses soxb1c. Our results further suggest that the tlx-expressing ESNPs differentiate promptly into ESNs, while the soxb1c-expressing population is maintained during later development to supply the elongating larvae with additional GLU-ir ESNs (Fig. 3h–j).

Fig. 7.

Co-localization of neural marker gene expression with ectodermal sensory neurons (ESNs) in amphioxus larvae. All animals are shown in lateral view with their anterior end directed towards the right. a, a′ hu/elav, b, b′ tlx, and c, c′ soxb1c gene expression (yellow) was detected in amphioxus larvae at 36 hpf (hours post fertilization). ESNs were labeled by immunostaining against glutamate (GLU-ir, green) and acetylated tubulin (AT-ir, red). Nuclei were labeled with the nucleic acid dye Hoechst (blue). The white boxes in a–c indicate the position of the respective close-ups shown in a′–c′. Close-ups were generated from confocal z-stacks that only include the lateral ectoderm on one side of the larvae. Arrows in a′ indicate differentiated ESNs expressing hu/elav and the arrowhead an undifferentiated ESN progenitor (ESNP) expressing hu/elav. The arrow in b′ highlights a differentiated ESN expressing tlx and the arrowhead a differentiated ESN that does not express tlx. Arrows in c′ mark differentiated ESNs that do not express soxb1c and the arrowheads undifferentiated ESNPs expressing soxb1c. The scale bar in a also applies to b, c, and the scale bar in a′ also applies to b′, c′

Roles of retinoic acid signaling during ectodermal sensory neuron progenitor development

Finally, we analyzed how pharmacological manipulation of RA signaling levels at either 6 or 24 hpf affects the formation of ESNPs expressing hu/elav, tlx, and soxb1c in amphioxus larvae at 30 hpf. To this end, the larvae were divided into three sections of equal size along their anterior–posterior axis (i.e., into an anterior, a middle, and a posterior section), and the number of ESNPs per section was counted (Fig. 8). Of note, ESNPs were only counted in the lateral ectoderm on one side of developing amphioxus larvae, whereas GLU-/AT-ir ESNs were counted on both sides of the larvae.

Fig. 8.

Statistical analyses of the effects of retinoic acid (RA) signaling alterations on amphioxus ectodermal sensory neuron progenitor (ESNP) development. The number and anterior–posterior distribution of a hu/elav-, b tlx-, and c soxb1c-expressing ESNPs was assessed in larvae at 30 hpf (hours post fertilization). ESNPs were only counted in the lateral ectoderm on one side of the animals. Colored bars depict the average number of ESNPs either in the entire lateral ectoderm (all) or in a specific ectodermal section along the anterior–posterior axis (posterior, middle, anterior). Green bars stand for control animals, blue bars stand for animals treated with the RA receptor (RAR) antagonist BMS493, and red bars stand for animals treated with all-trans RA. Treatments began either at 6 (solid colored bars) or 24 hpf (striped colored bars). The number (n) of animals that were counted for each condition is indicated at the base of the first five colored bars. The error bars depict the standard deviation (σ), and an asterisk (*) above an error bar indicates that the difference between this condition and the corresponding control is statistically significant

Control larvae possessed on average 24.5 hu/elav-expressing ESNPs (σ = 3.4; n = 12) at 30 hpf: 6.8 in the anterior (σ = 1.3), 11.1 in the mid-trunk (σ = 1.7), and 6.7 in the posterior region (σ = 1.4) (Fig. 8a). In animals that were treated with the RAR antagonist BMS493 at 6 hpf, hu/elav-expressing ESNPs appeared to be slightly shifted towards more posterior levels (Fig. 9a, a′, b, b′, f, f′, g, g′), but no statistically significant changes in their number and distribution could be detected (Fig. 8a). In contrast, RA treatment at 6 hpf strongly increased the overall number of hu/elav-expressing ESNPs to 38.9 (σ = 8.9; n = 10). Most of these additional ESNPs were observed in mid-trunk and anterior regions of the larvae, which, respectively, contained 16.6 (σ = 6.0) and 15.6 (σ = 2.7) ESNPs (Figs. 8a, 9a, a′, c, c′, f, f′, h, h′). Later treatments, at 24 hpf, also increased the overall number of hu/elav-expressing ESNPs, to 27.3 (σ = 2.1; n = 8) for the BMS493 treatment and to 30.7 (σ = 2.7; n = 10) for the RA treatment (Fig. 8a). These additional ESNPs were chiefly located in the posterior region of BMS493-treated animals (Fig. 9a, a′, d, d′, f, f′, i, i′), which thus contained 9.6 ESNPs (σ = 1.1), or in the anterior and posterior regions of RA-treated animals (Fig. 9a, a′, e, e′, f, f′, j, j′), which, respectively, contained 10.0 (σ = 1.6) and 9.0 ESNPs (σ = 0.7) (Fig. 8a). These results are largely consistent with those obtained for GLU- and AT-ir ESNs (Fig. 4). Furthermore, similar effects were observed for vglut-expressing cells in the ectoderm of amphioxus larvae (Additional file 6: Figure S3).

Fig. 9.

Effects of retinoic acid (RA) signaling alterations on development of hu/elav-expressing cells in amphioxus. a–e′ Larvae at 30 hpf (hours post fertilization) and f–j′ larvae at 36 hpf are shown in lateral view (a–j) and dorsal view (a′–j′). a, a′, f, f′ Control animals treated with DMSO at 6 hpf. Dotted lines indicate the mid-trunk area, where a particularly high density of ectodermal sensory neuron progenitors (ESNPs) is observed (compare with Additional file 7: Figure S4). b, b′, d, d′, g, g′, i, i′ Animals treated with the RA receptor (RAR) antagonist BMS493 at two different developmental stages, 6 or 24 hpf. c, c′, e, e′, h, h′, j, j′ Animals treated with all-trans RA at two different developmental stages, 6 or 24 hpf. The treatment time point (t), 6 or 24 hpf, is indicated in the upper right corner of each image set. Scale bars are 50 µm. The scale bar in a also applies to a′, b–e′, and the scale bar in f also applies to f′, g–j′

In contrast to hu/elav-expressing ESNPs, tlx-expressing ESNPs were largely unaffected by treatments with BMS493 or RA (Figs. 8b, 10). Only early RA treatments at 6 hpf slightly shifted the tlx-expressing ESNPs anteriorly, thus eliminating them from the most posterior regions of the amphioxus tail ectoderm (Figs. 8b, 10a, a′, c, c′, f, f′, h, h′). Therefore, tlx-expressing ESNPs do not appear to majorly contribute to the observed effects of altered RA signaling levels on ESN formation.

Fig. 10.

Effects of retinoic acid (RA) signaling alterations on the development of tlx-expressing cells in amphioxus. a–e′ Larvae at 30 hpf (hours post fertilization) and f–j′ larvae at 36 hpf are shown in lateral view (a–j) and dorsal view (a′–j′). a, a′, f, f′ Control animals treated, at 6 hpf, with DMSO. b, b′, d, d′, g, g′, i, i′ Animals treated with the RA receptor (RAR) antagonist BMS493 at two different developmental stages, 6 or 24 hpf. c, c′, e, e′, h, h′, j, j′ Animals treated with all-trans RA at two different developmental stages, 6 or 24 hpf. The treatment time point (t), 6 or 24 hpf, is indicated in the right upper corner of each image set. Scale bars are 50 µm. The scale bar in a also applies to a′, b–e′, and the scale bar in f also applies to f′, g–j′

In control larvae, a small population of 4.5 soxb1c-expressing ESNPs (σ = 1.1; n = 12) can be observed in the mid-trunk ectoderm at 30 hpf (Fig. 8c). This population was shifted towards more posterior levels by BMS493 treatments at 6 hpf, so that the mid-trunk region lost on average 1.7 ESNPs (σ = 0.7; n = 12), while the posterior region gained 1.7 ESNPs (σ = 0.6) (Figs. 8c, 11a, a′, b, b′, f, f′, g, g′). In contrast, RA treatment at 6 hpf increased the overall number of soxb1c-expressing ESNPs to 16.1 (σ = 2.7; n = 12), with additional ESNPs mainly occupying the mid-trunk and anterior regions (Figs. 8c, 11a, a′, c, c′, f, f′, h, h′). Late BMS493 treatments, at 24 hpf, also increased the overall number of soxb1c-expressing ESNPs to 7.3 (σ = 1.6; n = 10), but additional soxb1c-expressing ESNPs were exclusively localized in the posterior region, which thus contained 2.4 ESNPs (σ = 0.8) (Figs. 8c, 11a, a′, d, d′, f, f′, i, i′). Late RA treatments, at 24 hpf, increased the amount of soxb1c-expressing ESNPs mainly in the mid-trunk ectoderm, but also in anterior and posterior regions (Figs. 8c, 11a, a′, e, e′, f, f′, j, j′). These results are in agreement with the effects of RA signaling alterations on the development of hu/elav-expressing ESNPs (Figs. 8a, 9) and GLU-/AT-ir ESNs (Fig. 4). In sum, our data thus show that RA signaling influences the number and distribution of amphioxus ESNs, mainly by acting on late soxb1c-expressing ESNPs, which form a neurogenic niche in the mid-trunk ectoderm of amphioxus larvae.

Fig. 11.

Effects of retinoic acid (RA) signaling alterations on the development of soxb1c-expressing cells in amphioxus. a–e′ Larvae at 30 hpf (hours post fertilization) and f–j′ larvae at 36 hpf are shown in lateral view (a–j) and dorsal view (a′–j′). All images are focused only on soxb1c-expressing cells in the ectoderm. a, a′, f, f′ Control animals treated at 6 hpf with DMSO. b, b′, d, d′, g, g′, i, i′ Animals treated with the RA receptor (RAR) antagonist BMS493 at two different developmental stages, 6 or 24 hpf. c, c′, e, e′, h, h′, j, j′ Animals treated with all-trans RA at two different developmental stages, 6 or 24 hpf. The treatment time point (t), 6 or 24 hpf, is indicated in the right upper corner of each image set. a–e′ Dotted lines mark the ectodermal domain that contains soxb1c-expressing ectodermal sensory neuron progenitors (ESNPs) (compare with Additional file 9: Figure S6). d, d′ Arrowheads mark soxb1c-expressing ESNPs that are induced specifically in the tail ectoderm of early larvae, which had been treated with BMS493 at 24 hpf. Scale bars are 50 µm. The scale bar in a also applies to a′, b–e′, and the scale bar in f also applies to f′, g–j′

Discussion

In vertebrates, RA signaling influences the development of neural crest and neurogenic placode derivatives, which give rise to portions of the PNS [17], and thus also contributes to the establishment of neurobehavior requiring PNS input [1–5]. However, information about these RA signaling functions is still fragmentary and it is currently unclear whether they are conserved among chordates. In this study, we hence assessed how RA signaling contributes to the ontogeny of sensory functions and of the PNS in the cephalochordate amphioxus, a good proxy for the ancestral chordate condition [47, 73]. In amphioxus, RA signaling is first activated at mid-gastrula stages, when the single amphioxus rar gene becomes expressed throughout the mesoderm and weakly throughout the ectoderm [41]. At about the same time, six aldh1 duplicates, which encode potential RA synthesis enzymes, start to be expressed in posterior mesendodermal domains of the embryo [76]. Of the three genes encoding RA degrading enzymes in amphioxus, cyp26-1, cyp26-2, and cyp26-3 [77], cyp26-2 is the predominantly expressed gene during development that is first detectable around the blastopore of mid-gastrula stages [77]. By the mid-neurula stage, cyp26-2 expression is present in the two anterior-most somites, in the anterior- and posterior-most ectoderm as well as in the anterior- and posterior-most endoderm [77]. Thus, RA signaling in the amphioxus embryo most likely involves a posterior RA source, from where the morphogen diffuses, creating a posterior-high signaling gradient that is degraded in distinct anterior and posterior domains. A similar RA gradient has been visualized in zebrafish [78], supporting the notion that RA signaling levels play important context-dependent roles during chordate ontogeny.

Accordingly, we first tested whether altering RA signaling levels during amphioxus embryogenesis affects sensory functions. Our results show that both inhibiting and increasing RA signaling levels has a negative impact on the ability of amphioxus larvae to react to external stimuli. Notably, responsiveness to mechanical as well as chemical stimulation was most severely impaired, if RA signaling was inhibited starting from late neurula (24 hpf) rather than earlier blastula (6 hpf) stages. In contrast, early exposure to excess RA caused mainly motor impairments. These findings strongly suggest that RA signaling contributes to different aspects of amphioxus PNS development in a stage-dependent manner. Therefore, we next investigated how RA signaling influences differentiation of the amphioxus PNS.

Using antibodies against AT and GLU as markers, we were able to detect a large set of about 40 ESNs that arises more or less simultaneously at about 30 hpf and is evenly distributed along the anterior–posterior axis of amphioxus larvae at 36 hpf. Manipulation of RA signaling levels during amphioxus embryogenesis significantly changed both the number and the distribution of these ESNs in a stage-dependent manner. Altering endogenous RA signaling levels at early stages mostly caused minor shifts in the distribution of ESNs along the anterior–posterior axis. In contrast, later inhibition or increase of RA signaling activity led to the formation of additional ESNs in mid-trunk and posterior ectoderm or in mid-trunk and anterior ectoderm, respectively. Interestingly, the responsiveness of amphioxus larvae to external stimulation was most severely reduced by late manipulation of RA signaling levels. A potential explanation could be that the presence of excess GLU-ir ESNs causes a mismatch between excitatory and inhibitory inputs, which impairs sensory information processing. Early exposure to excess RA further caused motor impairments associated with an overall anterior shift of ESNs. Since sensory feedback is crucial for the control of motor functions [79, 80], these motor impairments might be, at least in part, due to a lack of ESNs in the tail region. Moreover, it has been reported that altering RA signaling levels during early amphioxus development affects the composition of ESN types along the anterior–posterior axis [29], which is likely to perturb the assembly of functional neuronal circuits.

To better understand how RA signaling controls ESN formation, we subsequently analyzed proliferation and apoptosis patterns in the ectoderm of amphioxus larvae. In the nervous system of vertebrates, RA signaling is known to simultaneously act as a permissive differentiation signal, by repressing the FGF-dependent maintenance of progenitor cell function, and as an instructive signal that induces neuronal differentiation [81, 82]. Furthermore, RA signaling can determine the precise timing of stem cell differentiation by generating heritable epigenetic changes in chromatin responsiveness to both RA and other signaling pathways [83] and may exert opposite effects on cell survival and cell cycle, depending on the presence of specific binding proteins [84, 85]. In amphioxus, upregulation of RA signaling did not overtly alter ectodermal proliferation rates, although a slight reduction of apoptosis was observed. In contrast, downregulation of RA signaling increased proliferation rates, while apoptosis also seemed to be slightly elevated, but only for animals in which RA signals were blocked from an early stage. These results are consistent with a role for RA signaling as a positive regulator of cell differentiation and cell survival in amphioxus. However, it was not possible to correlate RA signaling-dependent differences in proliferation and apoptosis with concurrent changes in the number and distribution of ESNs.

Consequently, we next investigated the development of amphioxus ESNPs that express different neural marker genes, such as hu/elav, tlx, and soxb1c. Our data show that the hu/elav gene is most likely expressed in all ESNPs as well as in all differentiated ESNs of amphioxus embryos and larvae. During gastrula and neurula stages, the tlx gene is also expressed in a large population of ESNPs that migrate from the ventral to the ventro-lateral ectoderm. However, in the amphioxus larva, tlx expression is only maintained in a subset of differentiated ESNs. In contrast, the soxb1c gene is expressed in only a small population of late ESNPs that is located at dorso-lateral levels of the mid-trunk ectoderm in amphioxus neurulae and larvae. Since the number of ESNs keeps increasing during amphioxus larval development [45] and since a particularly high density of ESNPs and ESNs can be observed in the mid-trunk ectoderm, this soxb1c-expressing ESNP population likely forms a neurogenic niche, which supplies new ESNs as the animals elongate. Consistently, soxb1 transcription factors have been shown to promote neural progenitor proliferation, while suppressing their differentiation in various taxa, including cnidarians [86], arthropods [87], echinoderms [88, 89], hemichordates [90], and vertebrates [91].

We then compared how the development of amphioxus ESNs and different ESNP populations is affected by manipulation of RA signaling levels (for an overview see Table 1). Importantly, we found that RA signaling influences the formation of late soxb1c-expressing ESNPs in a stage-dependent manner, but has little effect on early tlx-expressing ESNPs. Our data indicate that during early neurula stages, RA signaling specifies the mid-trunk territory in which the soxb1c-expressing ESNP population will form, while also playing a minor role in regulating the anterior–posterior distribution of tlx-expressing ESNPs. At later stages, RA signaling then contributes to the restricted maintenance of soxb1c-expressing ESNPs within the mid-trunk ectoderm, thus controlling ESN production. These functions likely rely on a posterior-high gradient of RA signaling: medium levels of RA in the mid-trunk ectoderm stimulate the specification of late soxb1c-expressing ESNPs and ESN production, while high levels of RA prevent this process in the tail ectoderm (Fig. 12). Consistently, the amphioxus rar is most strongly expressed in the mid-trunk ectoderm of amphioxus larvae and reacts to early alterations of RA signaling levels in a similar manner as the soxb1c-expressing ESNP population [29, 41]. Taken together, these data support a role for medium RA signaling levels in specifying and regulating a neurogenic niche in the mid-trunk ectoderm of amphioxus larvae.

Table 1.

Summary of the observed RA signaling effects on neural development in amphioxus

Neural cell population		Pharmacological treatment effects
Marker	Region	t6 BMS493	t24 BMS493	t6 RA	t24 RA
GLU-/AT-ir	Anterior	0	0	+	+
GLU-/AT-ir	Middle	0	+	+	+
GLU-/AT-ir	Posterior	0	+	−	+
hu/elav	Anterior	0	0	+	+
hu/elav	Middle	0	0	+	+/0
hu/elav	Posterior	0	+	0	+
tlx	Anterior	0	0	0	0
tlx	Middle	0	0	0	0
tlx	Posterior	0	0	−	0
soxb1c	Anterior	0	0	+	+/0
soxb1c	Middle	−	0	+	+
soxb1c	Posterior	+	+	0	+
Sensory functions		Mildly impaired	Strongly impaired	Impaired	Impaired

Results were obtained from immunohistochemical and gene expression analyses of ectodermal sensory neurons (ESNs) and ESN progenitors (ESNPs) following pharmacological treatments of developing amphioxus with the retinoic acid receptor (RAR) antagonist BMS493 or all-trans retinoic acid (RA). The developmental time point (t) of the treatments, at either 6 or 24 hpf (hours post fertilization), is given together with the compound. The observed effects on the formation of selected neural cell populations and on sensory functions are indicated. Treatment outcomes for the different neural cell populations are depicted as follows: 0 = no effect, + = gain of cells, − = loss of cells. Minor effects are indicated with a “/0”

GLU-/AT-ir glutamate/acetylated tubulin immunoreactivity

Fig. 12.

Retinoic acid (RA) signaling dependence of ectodermal sensory neuron (ESN) formation in amphioxus. Schematic representation of an amphioxus larva at 30 h post fertilization (hpf) with the anterior end directed towards the right. The central nervous system (CNS) is drawn in orange, the gut is drawn in gray, and a posterior-high gradient of RA signaling is indicated in magenta. ESN progenitors (ESNPs) are depicted as small ovals. Ectodermal expression of neural marker genes is shown as a black outline for hu/elav, as green filling for tlx, and as blue filling for soxb1c. Initially, tlx is widely expressed in the ventral ectoderm, but gradually becomes restricted to individual ESNPs that migrate dorsally. During early embryogenesis, RA signaling levels mildly influence the distribution of tlx-expressing ESNPs. The hu/elav gene is likely expressed in all specified ESNPs. In contrast, soxb1c expression is only detected in a small population of late developing ESNPs, located at mid-trunk levels in the dorso-lateral ectoderm. The single amphioxus rar gene is also most strongly expressed in this ectodermal domain [29, 41], as indicated by the black-outlined rhombus shown above the larva. Our data suggest that medium levels of RA signaling in the mid-trunk ectoderm contribute to specification of the soxb1c-expressing ESNP population and regulate its neurogenic activity

Interestingly, it has previously been postulated that the source of endogenous RA as well as the rar expression domain move caudally, while the amphioxus larva elongates [92]. In this case, the ectodermal zone receiving medium levels of RA signaling, which are required for maintaining a soxb1c-expressing neurogenic niche, would also gradually be shifted towards more posterior levels. Thus, ESN production is probably matched to the posterior extension of the larval body and to the formation of new pharyngeal structures (e.g., gill slits), which also occurs in an anterior-to-posterior progression and was shown to depend on RA signaling [92].

The neurogenic niche in the lateral ectoderm of amphioxus larvae shares several similarities with vertebrate placodes. For instance, the vertebrate placodal marker genes six1/2 and eya are specifically expressed in a subset of amphioxus ESNPs in the mid-trunk ectoderm that corresponds well to the above-described soxb1c-expressing ESNP population [51, 54]. Although amphioxus lacks definite placodes and neural crest, it has been proposed that these structures might have evolved via recruitment of the ventral ESN precursor field into the neural plate border [51, 93]. Recent evidence from ascidian tunicates supports this notion: as in vertebrates, the PNS of the ascidian trunk and dorsal tail is derived from proto-placodal ectoderm adjacent to the neural plate that requires BMP inhibition for its specification, whereas peripheral ESNs of the ventral tail region are derived from a ventral ectoderm that requires high levels of BMP signaling, as in amphioxus [94–96]. Furthermore, caudal neural plate border cells of Ciona intestinalis were shown to include a migratory cell type resembling the neural crest-derived spinal ganglia neurons of vertebrates [97].

Of note, in early amphioxus larvae between 30 and 36 hpf, all ESNs showed GLU-ir, whereas later larvae also possessed GLU-negative ESNs. The GLU-ir ESNs of late larvae, between 48 and 108 hpf, were mostly concentrated in the mid-trunk ectoderm, i.e., in the area of the putative neurogenic niche. From these results, we hypothesize that most ESNs are born glutamatergic, but may later switch to other neurotransmitter identities. This hypothesis is supported by the downregulation of tlx expression in some, but not all, differentiated ESNs of amphioxus larvae at 36 hpf. In vertebrates, TLX determines GLU phenotypes by suppressing GABA phenotypes [98]. GABA-ir ESNs have previously been described in amphioxus larvae between 36 and 108 hpf [32, 50]. Accordingly, GABAergic fates are probably assigned to at least some amphioxus ESNs in a similar manner as in vertebrates.

The generation of primarily GLU-ir sensory neurons from a neurogenic niche in the amphioxus ectoderm is comparable to the olfactory placode of vertebrates, which gives rise to olfactory receptor neurons that convey sensory information directly to the CNS via conventional glutamatergic synapses [99, 100]. The olfactory placode comprises mostly slowly dividing neural progenitors [100]. Consistently, our EdU labeling results reveal only low levels of cell proliferation in the mid-trunk ectoderm of amphioxus larvae. In addition, it has been demonstrated that RA signaling is required for maintaining the slowly dividing neural precursor cells of the vertebrate olfactory epithelium [11]. This resembles RA signaling functions in regulating ESN production from the neurogenic niche in the amphioxus ectoderm. Although RA signaling has been implicated in patterning derivatives of other vertebrate placodes [17], it is currently unclear whether it also controls maintenance of their progenitor cells. Nonetheless, our findings support an evolutionary relationship between the soxb1c-expressing ESNPs in the lateral ectoderm of amphioxus larvae and vertebrate placodes.

Intriguingly, a role for RA signaling in maintaining slowly dividing neural precursor cells has further been confirmed in the developing and adult forebrain of mice [101]. Moreover, blocking of RA signaling was shown to reduce neural progenitor proliferation in the telencephalon of mice [102] as well as in the neural tube of quail and zebrafish embryos [103–105], whereas RA treatment increases the number of proliferating cells in chicken ventral neural tube explants [106]. Accordingly, RA signals are not only able to drive neural cell differentiation throughout much of the vertebrate nervous system [81, 82], but may exert either attenuating or stimulating effects that tune cell cycle behavior in a highly context-dependent manner to ensure a continuing production of neural cells without depleting the neural progenitor pool. The data presented in this study indicate that such a function exists also in amphioxus and is thus a conserved feature of chordate neurogenesis. The roles RA signaling plays in specifying and patterning the pre-placodal region [107, 108] and in regulating the morphogenesis of specific placode derivatives, such as the olfactory [10, 11], adenohypophyseal [109], and otic placodes [12–14], hence appear to already be pre-figured in the amphioxus ectoderm.

Conclusions

This study provides evidence for the presence of a neurogenic niche in the ectoderm of amphioxus larvae, which consists of soxb1c-expressing neural progenitors and ensures a continuous supply of ESNs during body elongation. Our data further support an important role for RA signaling in regulating the activity and the locally restricted maintenance of this neurogenic niche. Similar RA signaling functions can be observed in vertebrates [17], suggesting their conservation within chordates and indicating a close evolutionary relationship between the here-described neurogenic niche in the amphioxus ectoderm and vertebrate neurogenic placodes. Taken together, our findings thus illustrate the complex context-dependent actions of RA signaling during chordate PNS formation and provide novel insights into the evolution of this developmental process.

Electronic supplementary material

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Author contributions

EZ designed and performed experiments, analyzed and interpreted data, and wrote the manuscript. GG supported the collection of gene expression data, NSMR carried out phylogenetic analyses, and JKY contributed important advice concerning the selection of candidate genes. JKY, JCC, and SC provided methodological assistance, supported data analyses, and commented the manuscript. MS designed and supervised the study, analyzed and interpreted data, and wrote the manuscript. All authors have read and approved the manuscript.

Funding

This work was supported by a grant from the Agence Nationale de la Recherche (ANR-11-JSV2-002-01) and by funds from the Réseau André Picard (ANR-11-IDEX-0004-02, Sorbonne Universities) to MS and by a National Grant of the University of Genoa (2015) to SC. EZ was a doctoral fellow of the Studienstiftung der Deutschen Wirtschaft (SDW).

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Availability of data and material

All data used in this study are included in this published article and its supplementary materials.

Conflict of interest

The authors declare that they have no competing interests.