Abstract
Zhujiangyuan Nature Reserve, located in Qujing City, Yunnan Province, China, is reported with high fauna and floral diversity, while the fungal diversity of the region is poorly documented. During the summer season in 2023, decaying wood-inhabiting microfungi were collected from different microhabitats. The novel species were identified based on morphological characteristics and phylogenetic analyses (based on combined datasets of ITS, LSU, SSU, tef1-α, and rpb2 regions). Two species belong to Dothideomycetes (viz., Spegazziniazhujiangyuanensissp. nov. and Phaeoseptumzhujiangyuanensesp. nov. in Pleosporales) while the other one resides in Sordariomycetes (Synnemasporellafaniisp. nov. in Diaporthales). The results are in conformity with the earlier studies that predicted higher fungal diversity in this region.
Key words: Morpho-molecular, new fungal species, phylogeny, taxonomy, woody fungi
Introduction
Fungi have a worldwide distribution and underpin nearly all life on the Earth (Mueller and Schmit 2007). They can grow in a wide range of habitats, including extreme environments like deserts or high salt concentrations (Raghukumar and Raghukumar 1998; Dadachova et al. 2007). Fungi exist in various lifestyles, including pathogenic, saprophytic, endophytic, and symbiotic (Naranjo-Ortiz and Gabaldón 2019). They occur as decomposers to degrade organic materials, contribute to carbon and nutrient cycling directly in ecosystems (Richards et al. 2017), and play a role in facilitating mineral cycling, accelerating rock weathering, and promoting plant growth. Currently, the estimates of fungal diversity range from 2 to 3 million. Species Fungorum (2024) (accession date: 31 May 2024) lists all accepted species of fungi, currently 161,104 species; therefore, over 90% of fungal species is still unknown (Hawksworth and Lücking 2017; Niskanen et al 2023). It is predicted that a number of novel taxa could be harboured in tropical regions where the environmental factors are favourable for higher diversity and continued living (Hawksworth and Lücking 2017). Wijayawardene et al. (2021) reported that Yunnan and Guizhou Provinces in China would be an important locality to explore novel taxa although it showcases subtropical climate.
The Zhujiangyuan Nature Reserve harbours abundant plant resources, with forest coverage of more than 95% and exceeding 1,000 species of plants (Wang et al. 2015). The warm climate and sufficient moisture guarantee a rich fungal diversity in Zhujiangyuan Nature Reserve. However, few studies have been carried out in the Zhujiangyuan Nature Reserve, especially on the floristic diversity of fungi.
Zhujiang is the third longest river in China, which covers about 450,000 km2, and flows through most cities in Southern China and a wide range of areas in Northern Vietnam (Guo et al. 2023). It originates from Maxiong Mountain in Zhanyi District, Qujing City, Yunnan Province (Wang 2014). The fungal diversity of this region (i.e. Qujing City and Zhujiangyuan Nature Reserve) is not well documented. Nevertheless, recently, Doilom et al. (2021) introduced Praeclarispora Doilom, W. Dong, K.D. Hyde & C.F. Liao, a novel genus, with Praeclarisporaartemisiae Doilom, W. Dong, K.D. Hyde & C.F. Liao as the type species. At the same time, Doilom et al. (2021) reported Plenodomusartemisiae A. Karun., Phookamsak & K.D. Hyde as a new collection from Artemisiaargyi in Qujing City, Yunnan Province. Wijayawardene et al. (2021) introduced two new species of Phragmocamarosporium Wijayaw., Yong Wang bis & K.D. Hyde (viz., P.magnoliae and P.qujingensis) and one new species of Lonicericola Phookamsak, Jayasiri & K.D. Hyde (viz., L.qujingensis), collected from Magnoliagrandiflora from Qujing Normal University garden, Qujing. Furthermore, five new host/geographical records of different taxa on Magnoliagrandiflora collected from Qujing City, were also reported by Wijayawardene et al. (2021), Botryosphaeriadothidea (Moug.) Ces. & De Not. and Sheariaformosa (Ellis & Everh.) Petr. were reported as new geographical records from China; Diplodiamutila (Fr.) Fr. and D.seriata De Not. were identified as new host records from M.grandiflora in China; while Angustimassarinapopuli Thambug. & K.D. Hyde was comfirmed as a new host and geographical record by Wijayawardene et al. (2021), which mentioned it is the first report of A.populi from China and on M.grandiflora.
During the summer of 2023 (July–September), we collected samples of microfungi associated with decaying wood litter in the North-east gate of Zhujiangyuan Nature Reserve. From the collected samples, we introduce three novel species belonging to Spegazzinia Sacc. (i.e. S.zhujiangyuanensis in Didymosphaeriaceae Munk, Pleosporales, Dothideomycetes O.E. Erikss. & Winka), Phaeoseptum Ying Zhang, J. Fourn. & K.D. Hyde (i.e. P.zhujiangyuanense in Phaeoseptaceae Boonmee, Thambugala & K.D. Hyde, Pleosporales, Dothideomycetes) and Synnemasporella X.L. Fan & J.D.P. Bezerra (i.e. S.fanii in Synnemasporellaceae X.L. Fan & J.D.P. Bezerra, Diaporthales Nannf., Sordariomycetes O.E. Erikss. & Winka) based on morpho-molecular analyses. The new taxa are provided with illustrations and morphological descriptions.
Materials and methodology
Sample collection
With prior permission of the management of Zhujiangyuan Nature Reserve, located in Qujing City, Yunnan Province, China, decaying wood litter samples were collected in the terrestrial habitats. The samples were stored in separate zip-lock plastic bags and transported to the microbiology laboratory of Qujing Normal University. Geographical information and sample information were recorded. Collections were maintained at room temperature (25 °C) and the samples were examined within 3–5 days.
Morphology, isolation and preservation
Fruiting bodies were examined using a Leica S8AP0 stereomicroscope with an HDMI 200C camera (Leica Corporation, Germany). Micro-morphological characters were photographed using an Olympus BX53 compound microscope (Olympus Corporation, Japan) with differential interference contrast (Olympus BX53 DIC compound microscope with an Olympus DP74 camera, Japan). Ascomata and conidiomata were sectioned by hand using a razor blade to obtain thin sections (Dai et al. 2022). All microscopic measurements were made using Tarosoft (R) Image FrameWork software (http://www.tarosoft.in.th/), and the measurements were provided as minimum–maximum values and average values. The photographic plates were edited and provided by using Adobe Photoshop CC 2018 (Adobe Systems, USA) software.
Single spore isolation was performed to obtain pure cultures following the methods described in Senanayake et al. (2020). Germinating spores were photographed, transferred to potato dextrose agar (PDA), and then incubated under the dark at 27 °C to obtain a pure culture, which were photographed to record the different characters. After a week, hyphal tips were transferred into PDA plates and grown at 27 °C in the dark.
Dried herbarium specimens and living cultures were preserved at the Mycological Herbarium of Zhongkai University of Agriculture and Engineering (MHZU) and Zhongkai University of Agriculture and Engineering (ZHKUCC), China. Duplicates of holotypes and type cultures were deposited at the Herbarium of Guizhou Medical University, Guiyang, China (GMB) and Guizhou Medical University Culture Collection (GMBCC) in Guiyang, China. Index Fungorum identifiers (2023) were obtained for the newly introduced taxa.
In the text, the following abbreviations are used: n = a number of ascospores/asci/conidiogenous cells/conidiophores/conidia measured from a given number of specimens, x̄¯ = arithmetical average of sizes of all ascospores/asci/conidiogenous cells/conidia.
DNA extraction, PCR amplification and sequencing
Fresh cultures were grown on PDA in the dark at 27 °C for 15–30 days. The genomic DNA of the fungus was extracted from fresh cultures according to the specifications of the Biospin Fungal Genomic DNA Extraction Kit (bioflux ®). Both forward and reverse primers were used for the amplification of internal transcribed spacers (ITS), large subunit rDNA (LSU), small subunit rDNA (SSU), translation elongation factor 1-α (tef1-α) and RNA polymerase II second largest subunit (rpb2) regions are listed in Table 1. A final volume of polymerase chain reaction (PCR) was prepared, including 1 μl of DNA template, 1 μl of each forward and reverse primer, 12.5 μl of 2 × taq PCR Master Mix and 9.5 μl of double-distilled water (ddH2O) as described by Dai et al. (2022). The PCR thermal cycling procedure for amplifying ITS, LSU, SSU, tef1-α and rpb2 regions was run under the conditions presented in Table 2. The PCR products were sent to Shanghai Sangon Biological Engineering Technology & Services Co. (Shanghai, People’s Republic of China) for sequencing. All newly generated sequences were deposited in GenBank and accession numbers were obtained.
Table 1.
Forward and reverse primers information of ITS, LSU, SSU, tef1-α and rpb2 regions.
| Locus | Primers | Reference |
|---|---|---|
| ITS | Forward: ITS5 TCCTCCGCTTATTGATATGC | White et al. (1990) |
| Reverse: ITS4 GGAAGTAAAAGTCGTAACAAGG | ||
| LSU | Forward: LROR GTACCCGCTGAACTTAAGC | Vilgalys and Hester (1990) |
| Reverse: LR5 ATCCTGAGGGAAACTTC | ||
| SSU | Forward: NS1 GTAGTCATATGCTTGTCTC | White et al. (1990) |
| Reverse: NS4 CTTCCGTCAATTCCTTTAAG | ||
| tef1-α | Forward: EF1-983F | Rehner and Buckley (2005) |
| GCYCCYGGHCAYCGTGAYTTYAT | ||
| Reverse: EF1-2218R | ||
| ATGACACCRACRGCRACRGTYTG | ||
| rpb2 | Forward: fRPB2-5f GAYGAYMGWGATCAYTTYGG | Liu et al. (1999) |
| Reverse: fRPB2-7cr CCCATRGCTTGTYYRCCCAT |
Table 2.
The PCR thermal cycling procedure for amplifying ITS, LSU, SSU, tef1-α, and rpb2 regions.
| ITS, LSU, SSU and tef1-α | Initial denaturation 95 °C for 5 min. Followed by 35 cycles, denaturation at 95 °C for 30 s, annealing at 55 °C for 50 s, elongation at 72 °C for 90 s. Final extension at 72 °C for 10 min | Dai et al. (2022) |
| rpb2 | Initial denaturation 95 °C for 3 min. Follow by 35 cycles, elongation at 94 °C for 1 min, annealing at 52 °C for 50 s, elongation at 72 °C for 1 min. Final extension at 72 °C for 10 min | Ma et al. (2022) |
Phylogenetic analyses
Based on blast similarity and related publications, closely related sequences were downloaded from GenBank (Table 3). Single gene sequence alignment was performed by mafft v.7.215 (http://mafft.cbrc.jp/alignment/server/index.html) (Katoh and Standley 2013), and final improvements were done using BioEdit v.7.0.5.2 (Hall 2004). Alignment of ITS, LSU, SSU, tef1-α and rpb2 regions was combined with MEGA6 version 6.0 (Tamura et al. 2013). The alignment of combined datasets in FASTA format was converted to PHYLIP and NEXUS formats by using ALTER (Alignment Transformation Environment online, http://sing.ei.uvigo.es/ALTER/) (Glez-Peña et al. 2010). The online tool Findmodel (http://www.hiv.lanl.gov/content/sequence/findmodel/findmodel.html) was used to determine the best nucleotide substitution model for each partition data (Dai et al. 2022).
Table 3.
Names, strain numbers, and corresponding GenBank accession numbers of taxa were used in this study.
| Taxon | Strain Number | GenBank Accession Numbers | |||
| ITS | LSU | SSU | tef1-α | ||
| Didymosphaeriaceae | |||||
| Alloconiothyriumaptrootii | CBS 980.95T | JX496121 | JX496234 | N/A | N/A |
| A.aptrootii | CBS 981.95 | JX496122 | JX496235 | N/A | N/A |
| A.encephalarti | CPC: 35980 | MN562102 | MN567610 | N/A | N/A |
| Austropleosporaarchidendri | MFLUCC 17-2429 | MK347757 | MK347974 | MK347863 | MK360044 |
| A.archidendri | MFLU 22-0042 | OP058964 | OP059055 | OP059006 | OP135941 |
| Bambusistromadidymosporum | MFLU 15-0057T | KP761733 | KP761730 | KP761737 | KP761727 |
| B.didymosporum | MFLU 15-0058 | KP761734 | KP761731 | KP761738 | KP761728 |
| Bimurianovae-zelandiae | CBS 107.79T | MH861181 | AY016356 | AY016338 | DQ471087 |
| Chromolaenicolananensis | MFLUCC 17-1473T | MN325015 | MN325003 | MN325009 | MN335648 |
| C.nanensis | MFLUCC 17-1477 | MN325014 | MN325002 | MN325008 | MN335647 |
| C.sapindi | KUMCC 21-0564T | OP058967 | OP059058 | OP059009 | OP135943 |
| Cylindroaseptosporaleucaenae | MFLUCC 17-2424T | NR_163333 | NG_066310 | MK347856 | MK360047 |
| C.siamensis | MFLUCC 17-2527T | MK347760 | MK347976 | MK347866 | MK360048 |
| Deniquelatabarringtoniae | MFLUCC 11-0422T | NR_111779 | NG_042696 | JX254656 | N/A |
| Dictyoarthriniumvittalii | NFCCI4249T | MF406218 | MF182395 | MF622059 | MF182398 |
| D.hydei | SQUCC 13296 T | MW077145 | N/A | MW077161 | MW075771 |
| D.musae | MFLUCC 20-0105T | MT482323 | MT482320 | MT482326 | MT495602 |
| D.musae | MFLUCC 20-0106 | MT482324 | MT482321 | MT482327 | MT495603 |
| D.sacchari | MFLUCC 20-0107 | MT482325 | MT482322 | MT482328 | N/A |
| D.sacchari | CBS 529.73 | N/A | MH872479 | N/A | N/A |
| D.thailandicum | KUMCC 21-0664T | OP058965 | OP059056 | OP059007 | N/A |
| D.thailandicum | KUMCC 21-0665 | OP058966 | OP059057 | OP059008 | OP135942 |
| Didymocreasadasivanii | CBS 438.65T | MH858658 | DQ384103 | N/A | N/A |
| Didymosphaeriarubi-ulmifolii | MFLUCC 14-0023T | N/A | KJ436586 | NG_063557 | N/A |
| D.rubi-ulmifolii | MFLUCC 14-0024 | N/A | KJ436585 | KJ436587 | N/A |
| Kalmusiaitalica | MFLUCC 14-0560T | KP325440 | KP325441 | KP325442 | N/A |
| K.variispora | CBS 121517T | MH863113 | MH874668 | N/A | N/A |
| K.ebuli | CBS 123120T | KF796674 | JN644073 | JN851818 | N/A |
| Kalmusibambusatriseptata | MFLUCC 13-0232T | KY682697 | KY682695 | KY682696 | N/A |
| Karstenulalancangensis | KUMCC 21-0670T | OP058969 | OP059060 | OP059011 | N/A |
| K.lancangensis | KUMCC 21-0677 | OP058970 | OP059061 | OP059012 | N/A |
| Laburnicolahawksworthii | MFLUCC 13-0602T | KU743194 | KU743195 | KU743196 | N/A |
| L.muriformis | MFLUCC 14-0921T | KU743200 | KU743201 | KU743202 | N/A |
| Letendraeacordylinicola | MFLUCC 11-0150 | KM213996 | KM213999 | KM214002 | N/A |
| L.cordylinicola | MFLUCC 11-0148T | NR_154118 | NG_059530 | KM214001 | N/A |
| Montagnuladonacina | KUMCC 21-0653 | OP058961 | OP059052 | OP059003 | OP135938 |
| M.thailandica | MFLUCC 17-1508T | MT214352 | NG070949 | NG070158 | MT235774 |
| Neokalmusiabrevispora | KT 1466T | LC014573 | AB524600 | AB524459 | AB539112 |
| N.scabrispora | KT 1023 | LC014575 | AB524593 | AB524452 | AB539106 |
| Neptunomycesaureus | CMG12T | MK912121 | N/A | N/A | MK948000 |
| Paracamarosporiumfagi | CPC 24890 | KR611886 | KR611904 | N/A | N/A |
| P.fagi | CPC 24892T | KR611887 | KR611905 | N/A | N/A |
| P.anthostomoides | MFLU 16-0172T | KU743206 | KU743207 | KU743208 | N/A |
| Paraphaeosphaeriarosae | MFLUCC 17-2547 | MG828935 | MG829044 | MG829150 | MG829222 |
| P.rosae | MFLUCC 17-2549T | MG828937 | MG829046 | MG829152 | MG829223 |
| Phaeodothiswinteri | CBS 182.58 | N/A | GU301857 | GU296183 | N/A |
| Pseudocamarosporiumpropinquum | MFLUCC 13-0544 | KJ747049 | KJ813280 | KJ819949 | N/A |
| P.pteleae | MFLUCC 17-0724T | NR_157536 | MG829061 | MG829166 | MG829233 |
| Pseudopithomycesentadae | MFLUCC 17-0917T | N/A | NG_066305 | MK347835 | MK360083 |
| P.rosae | MFLUCC 15-0035T | MG828953 | MG829064 | MG829168 | N/A |
| Septofusisporathailandica | KUMCC 21-0647T | OP058971 | OP059062 | OP059013 | OP135945 |
| S.thailandica | KUMCC 21-0652 | OP058972 | OP059063 | OP059014 | N/A |
| Spegazziniabromeliacearum | URM 8084T | MK804501 | MK809513 | N/A | N/A |
| S.camelliae | WNA03 | MZ538526 | MZ538560 | N/A | MZ567102 |
| S.camelliae | CMU328T | MH734522 | MH734521 | MH734523 | MH734524 |
| S.deightonii | MFLUCC 20-0002T | MN956768 | MN956772 | MN956770 | MN927133 |
| S.intermedia | CBS 249.89T | MH862171 | MH873861 | N/A | N/A |
| S.jinghaensis | KUMCC 21-0495T | OP058973 | OP059064 | OP059015 | OP135946 |
| S.jinghaensis | KUMCC 21-0496 | OP058974 | OP059065 | OP059016 | OP135947 |
| S.lobulata | CBS 361.58T | MH857812 | MH869344 | N/A | N/A |
| S.musae | MFLUCC 20-0001T | MN930512 | MN930514 | MN930513 | MN927132 |
| S.neosundara | MFLUCC 15-0456T | KX965728 | KX954397 | KX986341 | N/A |
| S.radermacherae | MFLUCC 17-2285T | MK347740 | MK347957 | MK347848 | MK360088 |
| S.tessarthra | SH 287 | JQ673429 | AB807584 | AB797294 | AB808560 |
| S.zhujiangyuanensis | ZHKUCC 23-1020T | PP060498 | PP060512 | PP060504 | PP035539 |
| S.zhujiangyuanensis | GMBCC1002 | PP067151 | PP067156 | PP066043 | PP068812 |
| Tremateiaarundicola | MFLU 16-1275T | KX274241 | KX274248 | KX274254 | KX284706 |
| T.guiyangensis | GZAAS01T | KX274240 | KX274247 | KX274253 | KX284705 |
| T.murispora | GZCC 18-2787T | NR_165916 | MK972751 | MK972750 | MK986482 |
| Verrucoconiothyriumnitidae | CBS 119209 | EU552112 | EU552112 | N/A | N/A |
| Xenocamarosporiumacaciae | CBS 139895T | NR_137982 | NG_058163 | N/A | N/A |
| X.acaciae | MFLUCC 17-2432 | MK347766 | MK347983 | MK347873 | MK360093 |
| Phaeoseptaceae | |||||
| Alfoldiavorosii | CBS 145501T | JN859336 | MK589354 | MK589346 | MK599320 |
| Amorocoelophomacassiae | MFLUCC 17-2283T | NR_163330 | NG_066307 | NG_065775 | MK360041 |
| Angustimassarinaacerina | MFLUCC 14-0505T | NR_138406 | KP888637 | NG_063573 | KR075168 |
| A.populi | MFLUCC 13-0034T | KP899137 | KP888642 | NG_061204 | KR075164 |
| A.quercicola | MFLUCC 14-0506T | KP899133 | KP888638 | NG_063574 | KR075169 |
| Crassiclypeusaquaticus | CBS 143643T | LC312501 | LC312530 | LC312472 | LC312559 |
| Decaisnellaformosa | BCC 25616 | N/A | GQ925846 | GQ925833 | GU479851 |
| D.formosa | BCC 25617 | N/A | GQ925847 | GQ925834 | GU479850 |
| Forliomycesuniseptata | MFLUCC 15-0765T | NR_154006 | NG_059659 | NG_061234 | KU727897 |
| Gloniopsispraelonga | CBS 112415 | N/A | FJ161173 | FJ161134 | FJ161090 |
| Guttulisporacrataegi | MFLUCC 13-0442T | KP899134 | KP888639 | KP899125 | KR075161 |
| Halotthiaposidoniae | BBH 22481 | N/A | GU479786 | GU479752 | N/A |
| Hysteriumangustatum | MFLUCC 16-0623 | N/A | FJ161180 | GU397359 | FJ161096 |
| Lignosphaeriafusispora | MFLUCC 11-0377T | NR_164233 | KP888646 | N/A | N/A |
| Mauritianarhizophorae | BCC 28866 | N/A | GU371824 | GU371832 | GU371817 |
| Misturatosphaeriaaurantiacinotata | GKM 1238T | N/A | NG_059927 | N/A | GU327761 |
| Phaeoseptumaquaticum | CBS 123113T | KY940803 | JN644072 | N/A | N/A |
| P.carolshearerianum | NFCCI-4221T | MK307810 | MK307813 | MK307816 | MK309874 |
| P.carolshearerianum | NFCCI-4384 | MK307812 | MK307815 | MK307818 | MK309876 |
| P.hydei | MFLUCC 17-0801T | MT240622 | MT240623 | MT240624 | MT241506 |
| P.mali | MFLUCC 17-2108T | MK659580 | MK625197 | N/A | MK647990 |
| P.manglicola | NFCCI-4666T | MK307811 | MK307814 | MK307817 | MK309875 |
| P.terricola | MFLUCC 10-0102T | MH105778 | MH105779 | MH105780 | MH105781 |
| P.thailandicum | MFLU 19-2136 | OM293749 | OR211590 | OM293755 | OM305059 |
| P.thailandicum | HKAS 106993 | OM293750 | OM293745 | OM293756 | OM305060 |
| P.zhujiangyuanense | ZHKUCC 23-1022T | PP060500 | PP060514 | PP060506 | PP035541 |
| P.zhujiangyuanense | GMBCC1003 | PP067152 | PP067157 | PP066044 | PP068813 |
| Platystomumcrataegi | MFLUCC 14-0925T | KT026117 | KT026109 | KT026113 | KT026121 |
| Pleopunctumellipsoideum | MFLUCC 19-0390T | MK804512 | MK804517 | MK804514 | MK828510 |
| P.pseudoellipsoideum | MFLUCC 19-0391T | MK804513 | MK804518 | N/A | MK828511 |
| Pseudoaurantiascomakenyense | GKM 1195T | N/A | NG_059928 | N/A | GU327767 |
| P.cornisporum | CBS 143654T | LC312515 | LC312544 | LC312486 | LC312573 |
| Ramusculicolathailandica | MFLUCC 13-0284T | KP899141 | KP888647 | KP899131 | KR075167 |
| Sporormurisporaatraphaxidis | MFLUCC 17-0742T | NR_157546 | NG_059880 | NG_061296 | N/A |
| Sulcosporiumthailandicum | MFLUCC 12-0004T | MG520958 | KT426563 | KT426564 | N/A |
| Teichosporamelanommoides | CBS 140733T | NR_154632 | KU601585 | N/A | KU601610 |
| T.pusilla | CBS 140731T | NR_154633 | KU601586 | N/A | KU601605 |
| T.rubriostiolata | CBS 140734T | NR_154634 | KU601590 | N/A | KU601609 |
| Thyridariamacrostomoides | GKM 1033 | N/A | GU385190 | N/A | GU327776 |
| T.macrostomoides | GKM 1159 | N/A | GU385185 | N/A | GU327778 |
| T.macrostomoides | GKM 224N | N/A | GU385191 | N/A | GU327777 |
| Vaginatisporaappendiculata | MFLUCC 16-0314T | KU743217 | KU743218 | KU743219 | KU743220 |
| Westerdykellaornata | CBS 379.55 | AY943045 | GU301880 | GU296208 | GU349021 |
| Synnemasporellaceae | |||||
| Apiosporopsiscarpinea | CBS 771.79 | N/A | AF277130 | N/A | N/A |
| Apiosporopsis sp. | Masuya 11Af2-1 | N/A | AB669034 | N/A | N/A |
| Apoharknessiainsueta | CBS 111377T | JQ706083 | AY720814 | N/A | N/A |
| A.insueta | CBS 114575 | N/A | AY720813 | N/A | N/A |
| A.asterospermum | CBS 112404 | N/A | AB553745 | N/A | N/A |
| A.asterospermum | KT2138 | N/A | AB553744 | N/A | N/A |
| Auratiopycnidiellatristaniopsidis | CBS 132180 | JQ685516 | JQ685522 | N/A | N/A |
| Cainiellajohansonii | Kruys 731 | N/A | JF701920 | N/A | N/A |
| Chapeckianigrospora | AR 3809 | JF681957 | EU683068 | N/A | N/A |
| Chiangraiomycesbauhiniae | MFLUCC 17-1669T | MF190118 | MF190064 | N/A | MF377604 |
| C.bauhiniae | MFLUCC 17-1670 | MF190119 | MF190065 | N/A | MF377603 |
| Chrysocryptacorymbiae | CBS 132528 | JX069867 | JX069851 | N/A | N/A |
| C.koreana | CBS 143.97 | KX833584 | AF408378 | KX833684 | KX833490 |
| C.straminea | CBS 149.22 | AY339348 | AF362569 | KX833704 | KX833506 |
| C.wangiensis | CBS 132530 | JX069873 | JX069857 | KX833705 | KX833509 |
| Coryneumumbonatum | AR 3541 | N/A | EU683072 | N/A | N/A |
| C.umbonatum | MFLUCC 15-1110 | MF190121 | MF190067 | N/A | MF377610 |
| C.umbonatum | MFLUCC 13-0658T | MF190120 | MF190066 | N/A | MF377609 |
| Cryphonectriamacrospora | CBS 109764 | EU199182 | AF408340 | N/A | EU220029 |
| C.parasitica | ATCC 38755 | AY141856 | EU199123 | EU222014 | DQ862017 |
| Cryptodiaportheaesculi | CBS 109765 | DQ323530 | AF408342 | GU354004 | EU199138.2 |
| C.aesculi | CBS 121905 | EU254994 | EU255164 | DQ313558 | EU219269 |
| C.betulae | CBS 109763 | EU199180 | AF408375 | EU221884 | EU199139 |
| C.hypodermia | AR 3552 | EU199181 | AF408346 | N/A | EU199140 |
| C.suffusa | CBS 109750 | EU199207 | AF408376 | EU221945 | EU199163 |
| Cytosporaelaeagni | CFCC 89633 | KF765677 | KF765693 | KU710919 | KU710956 |
| C.leucostoma | CFCC 50468 | KT732949 | KT732968 | N/A | N/A |
| Dendrostomamali | CFCC 52102T | MG682072 | MG682012 | MG682052 | MG682032 |
| D.osmanthi | CFCC 52106T | MG682073 | MG682013 | MG682053 | MG682033 |
| D.quercinum | CFCC 52103T | MG682077 | MG682017 | MG682057 | MG682037 |
| Diaporthedecedens | CBS 109772 | KC343059 | AF408348 | N/A | N/A |
| D.detrusa | CBS 109770 | KC343061 | AF408349 | KC343787 | N/A |
| D.eres | CBS 109767 | KC343075 | AF408350 | KC343801 | N/A |
| Diaporthellacorylina | CBS 121124 | KC343004 | N/A | N/A | N/A |
| Diaporthella sp. | CN 5 | KP205483 | N/A | N/A | N/A |
| Diaporthella sp. | CN13 | KP205484 | N/A | N/A | N/A |
| Diaporthosporellacercidicola | CFCC 51994T | KY852492 | KY852515 | N/A | N/A |
| D.cercidicola | CFCC 51995 | KY852493 | KY852516 | N/A | N/A |
| Diaporthostomamachili | CFCC 52100T | MG682080 | MG682020 | MG682060 | MG682040 |
| D.machili | CFCC 52101 | MG682081 | MG682021 | MG682061 | MG682041 |
| Disculoideseucalypti | CPC 17650 | JQ685517 | JQ685523 | N/A | N/A |
| D.eucalyptorum | CBS 132184 | NR_120090 | JQ685524 | N/A | N/A |
| Ditopelladitopa | CBS 109748 | EU199187 | EU199126 | N/A | EU199145 |
| Erythrogloeumhymenaeae | CPC 18819 | JQ685519 | JQ685525 | N/A | N/A |
| G.gnomon | CBS 199.53 | AY818956 | AF408361 | EU221885 | EU219295 |
| Harknessiaeucalypti | CBS 342.97 | AY720745 | AF408363 | N/A | N/A |
| Hercosporatiliae | AR 3526 | N/A | AF408365 | N/A | N/A |
| Hyaliappendisporagalii | MFLUCC 16-1208 | MF190149 | MF190095 | N/A | N/A |
| Juglanconisappendiculata | D96 | KY427139 | KY427139 | KY427208 | KY427189 |
| J.juglandina | ME23 | KY427150 | KY427150 | KY427219 | KY427200 |
| J.oblonga | ME14 | KY427151 | KY427151 | KY427220 | KY427201 |
| J.pterocaryae | ME20 | KY427155 | KY427155 | KY427224 | KY427205 |
| Lamproconiumdesmazieri | MFLUCC 14-1047 | KX430132 | KX430133 | MF377592 | N/A |
| L.desmazieri | MFLUCC 15-0870 | KX430134 | KX430135 | MF377591 | MF377605 |
| Lasmenia sp. | CBS 124123 | GU797406 | JF838338 | N/A | N/A |
| Lasmenia sp. | CBS 124124 | JF838336 | JF838341 | N/A | N/A |
| Luteocirrhusshearii | CBS 130776 | NR_120254 | NG_042770 | N/A | N/A |
| Macrohilumeucalypti | CPC 19421T | KR873244 | KR873275 | N/A | N/A |
| Melanconiellaellisii | BPI 878343 | JQ926271 | JQ926271 | JQ926406 | JQ926339 |
| M.spodiaea | MSH | JQ926298 | JQ926298 | JQ926431 | JQ926364 |
| Melanconisbetulae | CFCC 50471 | KT732952 | KT732971 | KT733001 | KT732986 |
| M.itoana | CFCC 50474 | KT732955 | KT732974 | KT733004 | KT732987 |
| M.marginalis | CBS 109744 | EU199197 | AF408373 | EU221991 | EU219301 |
| M.stilbostoma | CFCC 50475 | KT732956 | KT732975 | KT733005 | KT732988 |
| Nakataeaoryzae | CBS 243.76 | KM484861 | DQ341498 | N/A | N/A |
| Ophiodiaporthecyatheae | YMJ1364 | JX570889 | JX570891 | N/A | JX570893 |
| Pachytrypeprinceps | Rogers S | N/A | FJ532382 | N/A | N/A |
| P.rimosa | FF1066 | N/A | FJ532381 | N/A | N/A |
| Paradiaportheartemisiae | MFLUCC 14-0850 | MF190155 | MF190100 | N/A | N/A |
| P.artemisiae | MFLUCC 17-1663 | MF190156 | MF190101 | N/A | N/A |
| Phaeoappendisporathailandensis | MFLUCC 13-0161 | MF190157 | MF190102 | N/A | MF377613 |
| Phaeodiaportheappendiculata | CBS 123821 | KF570156 | KF570156 | N/A | N/A |
| Phragmoportheconformis | CBS 109783 | DQ323527 | AF408377 | N/A | N/A |
| Plagiostomaeuphorbiae | CBS 340.78 | EU199198 | AF408382 | N/A | DQ368643 |
| P.salicellum | CBS 109775 | DQ323529 | AF408345 | EU221916 | EU199141 |
| Prosopidicolamexicana | CBS 113530 | AY720710 | N/A | N/A | N/A |
| P.mexicana | CBS 113529T | AY720709 | KX228354 | N/A | N/A |
| Pseudomelanconiscaryae | CFCC 52110T | MG682082 | MG682022 | MG682062 | MG682042 |
| P.caryae | CFCC 52111 | MG682083 | MG682023 | MG682063 | MG682043 |
| Pseudoplagiostomaeucalypti | CBS 124807 | GU973512 | GU973606 | N/A | N/A |
| P.eucalypti | CBS 116382 | GU973514 | GU973608 | N/A | N/A |
| Pyriculariagrisea | Ina168 | AB026819 | AB026819 | N/A | N/A |
| Rossmaniaukurunduensis | AR 3484 | N/A | EU683075 | N/A | N/A |
| Silliaferruginea | CBS 126567 | JF681959 | EU683076 | N/A | N/A |
| Stegonsporiumpyriforme | CBS 124487 | KF570160 | KF570160 | N/A | KF570190 |
| Stilbosporamacrosperma | CBS 121883 | JX517290 | JX517299 | N/A | KF570196 |
| Sydowiellafenestrans | CBS 125530 | JF681956 | EU683078 | N/A | N/A |
| Synnemasporellaaculeans | CFCC 52094 | MG682086 | MG682026 | MG682066 | MG682046 |
| S.aculeans | CFCC 52095 | MG682087 | MG682027 | MG682067 | MG682047 |
| S.fanii | ZHKUCC 23-1018T | PP060496 | PP060510 | PP035537 | PP035545 |
| S.fanii | GMBCC1001 | PP067150 | PP067155 | PP068811 | PP084097 |
| S.toxicodendri | CFCC 52097T | MG682089 | MG682029 | MG682069 | MG682049 |
| S.toxicodendri | CFCC 52098 | MG682090 | MG682030 | MG682070 | MG682050 |
Note: “T” denotes ex-type. Newly generated sequences are indicated in bold. “N/A”: no data available in GenBank.
Maximum-likelihood (ML) analysis was carried out via the online portal CIPRES Science Gateway v. 3.3 (Miller et al. 2010), using RAxML-HPC v.8 on XSEDE (8.2.12) tool, with the default settings but adapted: the GAMMA nucleotide substitution model and 1000 rapid bootstrap replicates.
Bayesian analysis was performed by MrBayes v. 3.0b4 (Ronquist and Huelsenbeck 2003), and the model of evolution was estimated with MrModeltest v. 2.2 (Nylander 2004). The posterior probabilities (PP) (Rannala and Yang 1996; Zhaxybayeva and Gogarten 2002) were determined by the following Markov chain Monte Carlo sampling (MCMC) in MrBayes v.3.0b4 (Huelsenbeck and Ronquist 2001). Six simultaneous Markov chains were run for 1,000,000 generations, with trees sampled every 100th generation. The preburn was set to 5 and the run was automatically stopped when the mean standard deviation of the split frequency reached below 0.01 (Maharachchikumbura et al. 2015).
Figtree v. 1.4.0 (http://tree.bio.ed.ac.uksoftware/figtree/) (Rambaut 2006) was used to view tree. Microsoft Office PowerPoint 2016 (Microsoft Inc., Redmond, WA, USA) was used to edit the phylogram, and then convert it to jpg. file by using the Adobe PhotoShop CC 2018 software (Jiang et al. 2021).
Results
Phylogenetic analyses
Phylogenetic analyses of Spegazzinia
The concatenated dataset (ITS, LSU, SSU, and tef1-α regions) contained 74 strains in the sequence analysis, which comprise 2988 characters with gaps. Single gene analysis was carried out and compared with each species, to compare the topology of the tree and clade stability. Two strains of Bambusistromadidymosporum D.Q. Dai & K.D. Hyde (MFLU 15-0057 and MFLU 15-0058) are set as the outgroup taxon. The best-scoring RAxML tree with a final likelihood value of -16559.564563 is presented. The matrix had 838 distinct alignment patterns, with 23.64% of undetermined characters or gaps. Estimated base frequencies were as follows; A = 0.238369, C = 0.251538, G = 0.273530, T = 0.236562; substitution rates AC = 1.319072, AG = 2.377467, AT = 1.425866, CG = 0.960524, CT = 6.538802, GT = 1.000000; gamma distribution shape parameter alpha = 0.188509 (Fig. 1). GTR+I+G model was selected as the best model based on MrModeltest and was used for the Bayesian analysis. Overall tree topologies based on ML and BI analyses were similar and not significantly different. In the phylogenetic analysis (Fig. 1), our new strains (ZHKUCC 23-1020 (ex-type) and GMBCC1002) belonged to the genus Spegazzinia (Fig. 1). Both strains grouped as the sister clade to Spegazziniajinghaensis G.C. Ren & K.D. Hyde (KUMCC 21-0495 (ex-type) and KMUCC 21-0496), and phylogenetically well-distinct with high statistical values (95% ML and 1 PP; Fig. 1).
Figure 1.
The phylogenetic tree from the best scoring of the RAxML analysis based on combined (ITS, LSU, SSU and tef1-α) is rooted to Bambusistromadidymosporum (MFLU 15-0057 and MFLU 15-0058). Bootstrap values for maximum likelihood (MLBP) and Bayesian posterior probabilities (BYPP) equal to or greater than 50% and 0.95 are given at the respective branches. Hyphen (-) means a value lower than 50% (BS) or 0.95 (PP). The newly generated sequences are indicated in red bold. The ex-type strains are noted with “T”.
Phylogenetic analyses of Phaeoseptum
The concatenated dataset (ITS, LSU, SSU, and tef1-α regions) contained 45 strains in the sequence analysis, which comprise 3532 characters with gaps. Single gene analysis was carried out and compared with each species, to contrast the topology of the tree and clade stability. Hysteriumangustatum Pers. (MFLUCC 16-0623) and Gloniopsispraelonga (Schwein.) Underw. & Earle (CBS 112415) were selected as the outgroup taxa. The best-scoring RAxML tree with a final likelihood value of -23164.186742 is presented. The matrix had 1334 distinct alignment patterns, with 25.07% of undetermined characters or gaps. Estimated base frequencies were as follows; A = 0.241078, C = 0.255689, G = 0.276841, T = 0.226392; substitution rates AC = 1.125548, AG = 2.311485, AT = 1.305084, CG = 1.147813, CT = 6.370520, GT = 1.000000; gamma distribution shape parameter alpha = 0.281773 (Fig. 2). GTR+I+G model was selected as the best model based on MrModeltest and was used for the Bayesian analysis. Overall tree topologies based on ML and BI analyses were similar and not significantly different. In the phylogenetic analysis (Fig. 2), two strains of Phaeoseptumzhujiangyuanense (ZHKUCC 23-1022 (ex-type) and GMBCC1003) formed a monophyletic clade (100% ML, 1.00 PP). This clade formed a sister taxon to Phaeoseptummali Phukhams. & K.D. Hyde (MFLUCC-2108) with 95% ML and 1.00 PP support values.
Figure 2.
The phylogenetic tree from the best scoring of the RAxML analysis based on combined (ITS, LSU, SSU and tef1-α) is rooted to Hysteriumangustatum (MFLUCC 16-0623) and Gloniopsispraelonga (CBS 112415). Bootstrap values for maximum likelihood (MLBP) and Bayesian posterior probabilities (BYPP) equal to or greater than 50% and 0.95 are given at the respective branches. Hyphen (-) means a value lower than 50% (BS) or 0.95 (PP). The newly generated sequences are indicated in red bold. The ex-type strains are indicated with “T”.
Phylogenetic analyses of Synnemasporella
The concatenated dataset (ITS, LSU, tef1-α and rpb2 regions) contained 97 strains in the sequence analysis, which comprise 2575 characters with gaps. Single gene analysis was carried out and compared with each species, to compare the topology of the tree and clade stability. Nakataeaoryzae (Catt.) J. Luo & N. Zhang (CBS 243.76) and Pyriculariagrisea Cooke ex Sacc. (Ina168) are set as the outgroup taxa. The best-scoring RAxML tree with a final likelihood value of -30093.037277 is presented. The matrix had 1256 distinct alignment patterns, with 32.60% of undetermined characters or gaps. Estimated base frequencies were as follows; A = 0.248601, C = 0.250906, G = 0.280824, T = 0.219669; substitution rates AC = 1.521472, AG = 3.435591, AT = 1.966143, CG = 1.205529, CT = 7.891750, GT = 1.000000; gamma distribution shape parameter alpha = 0.244582 (Fig. 3). GTR+I+G model was selected as the best model based on MrModeltest and was used for the Bayesian analysis. Overall tree topologies based on ML and BI analyses were similar and not significantly different. In the phylogenetic analysis (Fig. 3), our collection of Synnemasporellafanii (ZHKUCC 23-1018 (ex-type) and GMBCC1001) resided in the genus Synnemasporella and formed a sister clade to S.toxicodendri (CFCC 52097 (ex-type) and CFCC 52098) with moderate support (ML 68% and 0.95 PP).
Figure 3.
The phylogenetic tree from the best scoring of the RAxML analysis based on combined (ITS, LSU, tef1-α and rpb2) is rooted to Nakataeaoryzae (CBS 243.76) and Pyriculariagrisea (Ina168). Bootstrap values for maximum likelihood (MLBP) and Bayesian posterior probabilities (BYPP) equal to or greater than 50% and 0.95, are given at the respective branches. Hyphen (-) means a value lower than 50% (BS) or 0.95 (PP). The newly generated sequences are indicated in red bold. The ex-type strains are indicated with “T”.
Taxonomy
Class Dothideomycetes O.E. Erikss. & Winka
Subclass Dothideomycetidae P.M. Kirk, P.F. Cannon, J.C. David & Stalpers ex C.L. Schoch, Spatafora, Crous & Shoemaker
Pleosporales Luttrell ex M.E. Barr
Didymosphaeriaceae Munk
. Spegazzinia
Sacc.
531AFDB6-2E37-54EE-8588-2A8F48DEF67B
Index Fungorum: IF9963
Notes.
The genus Spegazzinia was introduced by Saccardo (1880) with S.ornata (current name: S.tessarthra (Berk. & M.A. Curtis) Sacc. 1886 fideSaccardo 1886) as the type species. Initially, based on morphological characters with basauxic conidiogenesis, Spegazzinia was accommodated in Apiosporaceae, Sordariomycetes (Hyde et al. 1998). However, Tanaka et al. (2015) transferred Spegazzinia to Didymosphaeriaceae (Dothideomycetes) based on molecular data. Morphologically, species of Spegazzinia have a distinctive conidiophore ontogeny, as well as two types of conidia: α conidia are composed of 4–8 subglobose, dark cells with long spines, while β conidia are generally subspherical or broadly ellipsoid, flattened in one plane, cruciately septate or muriform, pale brown and smooth-walled (Samarakoon et al. 2020). Currently, 17 epithets are listed in Species Fungorum 2024 (accession date: 31 May 2024). Our new collection morphologically resembles Spegazzinias. str. and multi-locus phylogenetic analyses confirmed that it is a novel species.
. Spegazzinia zhujiangyuanensis
G.Q. Zhang, Wijayaw., & D.Q. Dai sp. nov.
3285B00B-2973-53D1-A45D-453E3AD9D6BA
Index Fungorum: IF901550
Figure 4.
Spegazziniazhujiangyuanensis (MHCU 23-0273, holotype) a, b fungal colonies on the host surface c–f conidiophore of α conidia and α conidia g, h α conidia i germinated α conidium j–m β conidia n, o culture characters on pda (n above o below). Scale bars: 150 μm (b); 25 μm (c); 20 μm (d–f); 15 μm (g–m).
Etymology.
Named after the locality from where it was collected, Zhujiangyuan, Yunnan (China).
Holotype.
MHCU 23-0273.
Description.
Saprobic on twigs of an unknown woody plant. Sexual morph: undetermined. Asexual morph: Hyphomycetous. Conidiomata sporodochia, powdery, dark, dense, 0.2–2 mm in diam. Conidiogenous cells 7–12 µm high × 2.5–6 µm wide (x̄¯ = 9.5 × 3.5 µm; n = 10), basauxic, ampulate, subspherical, hyaline-to-light-brown, rough at surface. Conidiophores of α conidia up to 32.5–142.5 × 1.5–3.5 µm (x̄¯ = 82.5 × 2.5 µm, n = 20), erect or flexuous, unbranched, dark brown. Conidiophores of β conidia 14.5–19 × 2.0–2.3 µm (x̄¯ = 16.3 × 2.1 µm; n = 20), short, erect, unbranched, sub-hyaline or light brown. Conidia two types; α conidia 17.5–25 × 15.5–26 µm (x̄¯ = 20.5 × 19.7 µm; n = 20), 4-celled, stellate-shaped, brown to dark-brown, globose to subglobose, with dark brown warts on the surface of some cells, with conspicuous spines, constricted at septa, 3.6–8 × 1–2.8 µm (x̄¯ = 5.3 × 1.7 µm; n = 20); β conidia 12.2–16 × 12–17 µm (x̄¯ = 14.1 × 14.6 µm; n = 20), 4-celled, disc-shaped, quadrangular or subspherical, pale brown at immaturity, becoming brown to dark-brown at maturity, usually attached with conidiogenous cells when detached from the conidiophore, each cell cruciately septate, turbinate, sometimes verrucose around the edges, deeply constricted at septa, flat from side view.
Culture characteristics.
Conidia germinating on PDA within 24 h. Colonies growing on PDA, reaching reached 30–40 mm diam. After 14 days at 27 °C, superficial, circular, curled, producing concentric circles after 3 weeks, gradually turning brownish gray to white from middle to edge, entire white margin, periphery white at the immature stage, reverse yellowish-brown.
Material examined.
China. Yunnan Province, Qujing City, Zhujiangyuan Nature Reserve, 25°30′N, 103°45′E, 01 September 2023, Gui-Qing Zhang & Dong-Qin Dai, QJNU 09 (MHCU 23-0273, holotype), ex-type ZHKUCC 23-1016; Ibid. (GMB 1002, isotype), ex-isotype GMBCC1002.
GenBank numbers.
Ex-type (ZHKUCC 23-1020): PP060498 (ITS); PP060512 (LSU); PP060504 (SSU); PP035539 (tef1-α), ex-isotype (GMBCC1002): PP067151 (ITS); PP067156 (LSU); PP066043 (SSU); PP068812 (tef1-α).
Notes.
Phylogenetic analyses based on ITS, LSU, SSU, and tef1-α gene regions showed that our new strains (ZHKUCC 23-1020 (ex-type) and GMBCC1002) belonged to the genus Spegazzinia (Fig. 1). Both strains grouped as the sister clade to S.jinghaensis (KUMCC 21-0495 (ex-type) and KMUCC 21-0496), but phylogenetically found distinct with high statistical values (95% ML bootstrap and 1.00 PP) (Fig. 1). Morphological differences between the new taxon and S.jinghaensis are listed in Table 4. Therefore, based on both morpho-molecular results, we herein introduce a new species in the genus, Spegazziniazhujiangyuanensis.
Table 4.
Diagnostic characters of Spegazziniajinghaensis and S.zhujiangyuanensis.
| Morphological character | Species name and reference | |
|---|---|---|
| Spegazziniajinghaensis (Ren et al. 2022) | S.zhujiangyuanensis (This study) | |
| Conidiomata | Sporodochial, velvety, 2–3 mm in diam. | Sporodochial, 0.2–2 mm in diam |
| Conidiogenous cells | 5–6 µm long × 4–5 µm wide | 7–12 µm long × 2.5–6 µm wide, rough surface |
| Conidiophores of α conidia | 80–120 × 1.4–2 µm, unbranched, dark brown | 32.5–142.5 × 1.5–3.5 µm, unbranched, rough surface |
| Conidiophores of β conidia | 3.5–8 × 2.5–3.5 µm short, erect, unbranched, sub-hyaline or light brown | 14.5–19 × 2–2.3 µm, short, erect, unbranched, sub-hyaline or light brown |
| Culture characters | Rough surface, reverse black | With entire white margin, curled, reverse yellowish-brown |
Phaeoseptaceae S. Boonmee, Thambug. & K.D. Hyde
. Phaeoseptum
Ying Zhang, J. Fourn. & K.D. Hyde
F275368B-9DF8-5CDA-A403-DE699BCA7ABC
Index Fungorum: IF561889
Notes.
Zhang et al. (2013) introduced Phaeoseptum with P.aquaticum Ying Zhang, J. Fourn. & K.D. Hyde as the type species. There are seven Phaeoseptum epithets listed in Species Fungorum (31 May 2024). Phaeoseptum is characterized by immersed ascomata, cellular pseudoparaphyses, bitunicate, fissitunicate clavate, 8-spored asci, and broadly fusiform, muriform, medium brown coloured, ascospores (Zhang et al. 2013; Phukhamsakda et al. 2019). Our new collection morphologically resembles Phaeoseptums. str. The phylogenetic study confirmed that the new collection represents a new species of Phaeoseptum (Fig. 2).
. Phaeoseptum zhujiangyuanense
G.Q. Zhang, Wijayaw., & D.Q. Dai sp. nov.
F260ABB0-3241-5D66-A120-C874361B1853
Index Fungorum: IF901551
Figure 5.
Phaeoseptumzhujiangyuanense (MHCU 23-0275, holotype) a–c appearance of ascomata on host substrate d, e vertical section of ascoma f ostiole g peridium h–k asci l pseudoparaphyses m germinated ascospore n–q ascospores r, s colonies on PDA (r above s below). Scale bars: 300 μm (a–c); 200 μm (d, e); 50 μm (f, g, p, q); 20 μm (h–o).
Etymology.
named after the locality from where it was collected, Zhujiangyuan, Yunnan (China).
Holotype.
MHCU 23-0275.
Description.
Saprobic on dead wood branches in terrestrial habitats. Sexual morph: Ascomata 215–470 μm long × 150–320 μm wide (x̄¯ = 340 × 225 µm, n = 20), solitary, scattered, semi-immersed to immersed, globose to subglobose, irregular, clypeate, ostiolate, sometimes erumpent as dark brown to black area from the host tissue, or sometimes with a slit-like opening. Ostiole 33–60 μm high, 15–55 μm diam., short, pale brown. Peridium 25–60 μm (x̄¯ = 44 μm, n = 15) wide, comprising 4–6 layers of cells of textura angularis, with thick-walled and brown cells of outer layers, with thin-walled and hyaline cells of inner layers. Hamathecium composed of 1–1.5 μm (x̄¯ = 1.6 µm, n = 20) wide, numerous, branched, cellular, septate, narrow pseudoparaphyses, anastomosing above the asci, and embedded in a gelatinous matrix. Asci 105–165 × 22–35 μm (x̄¯ = 140 × 30 μm, n = 20), 8-spored, bitunicate, fissitunicate, cylindrical-clavate to elongate-clavate, with a distinct pedicel, apically rounded and thinned, with a distinct ocular chamber at immature stage, with a minute ocular chamber when mature. Ascospores 35–42 × 9–15 μm (x̄¯ = 38 × 10 μm, n = 30), partly overlapping, uniseriate at base, 2–3-seriate above, pale to yellowish brown to medium brown from immaturity to maturity, oblong to broadly fusiform, with broadly rounded ends, slightly curved, with 7–13-transversally septa, and 5–21-vertical septa, rarely 2–5 longitudinal septa in each row, normally 1–2 longitudinal septa, but not all cells with a vertical septum in median, the septa partly pale brown, slightly constricted at septa, smooth-walled. Y-shaped septum present or absent in the end cells, with hyaline to pale brown end cells, Asexual morph: undetermined.
Culture characteristics.
Ascospores germinating on PDA, producing germ tubes from both ends of the ascospores within 24 hours. Colonies growing on PDA, reaching reached 30–40 mm diam. after 14 days at 27 °C, surface pale brown, irregular, curled, producing concentric circles after 3 weeks, reverse warm blackish brown with olive buff at margins.
Material examined.
China. Yunnan Province, Qujing City, Zhujiangyuan Nature Reserve, 25°30′N, 103°45′E, 01 September 2023, Gui-Qing Zhang & Nalin N. Wijayawardene, RM16 (MHCU 23-0275, holotype), ex-type ZHKUCC 23-1022; Ibid. (GMB 1003, isotype), ex-isotype GMBCC1003.
GenBank numbers.
Ex-type (ZHKUCC 23-1022): PP060500 (ITS); PP060514 (LSU); PP060506 (SSU); PP035541 (tef1-α), ex-isotype (GMBCC1003): PP067152 (ITS); PP067157 (LSU); PP066044 (SSU); PP068813 (tef1-α).
Note.
The phylogenetic analyses based on a combined dataset of ITS, LSU, SSU and tef1-α gene regions (Fig. 2) showed that our isolates (ZHKUCC 23-1022 (ex-type) and GMBCC1003) placed in the genus Phaeoseptum in Didymosphaeriaceae (Fig. 2). Phaeoseptumzhujiangyuanense clusters with P.manglicola (NFCCI-4666) and P.mali (MFLUCC-2108) with significant support (ML 100% and 1.00 PP). Morphologically, P.zhujiangyuanense, P.manglicola Devadatha, V.V. Sarma & E.B.G. Jones and P.mali share similar characteristics in their ascomata, asci and ascospores, and in their overlapping dimensions. However, P.zhujiangyuanense is distinguishable from P.mali and P.manglicola in some characters, as shown in Table 5. Therefore, based on both morphological and phylogenetic evidences, we established this novel species in Phaeoseptum.
Table 5.
Diagnostic characters of Phaeoseptummali, P.manglicola and P.zhujiangyuanense.
| Morphological character | Species name and reference | ||
|---|---|---|---|
| P.mali (Phukhamsakda et al. 2019) | P.manglicola (Dayarathne et al. 2020) | P.zhujiangyuanense (This study) | |
| Ascomata | Globose ascomata | Globose to subglobose or irregular, aggregate to solitary, with ostiolate | Globose to subglobose, scattered, solitary, ostiolate, with slit-like opening |
| Ostiole | Opened pore, ostiolate with periphyses | 28–94 μm high, 39–96 μm diam | 33–60 μm high, 15–55 μm diam |
| Peridium | 5–19 µm, composed of 8–11 layers | 30– 85 µm, composed 4–6 layers | 25–60 μm wide, composed 4–6 layers |
| Asci | 85–190 × 19–32 μm, cylindrical-clavate to elongate-clavate; apically rounded, ocular chamber clearly visible when immature | 102–212 × 17–27.5 μm, cylindrical to clavate; apically rounded and thickened; a refractive plate in the ectoascus and a refractive apical plate in the endoascus | 105–165 × 22–35 μm, cylindrical-clavate to elongate-clavate; apically rounded and thinned, with a clearly ocular chamber at immature stage |
| Ascospores | 27–38 × 8–13 μm, broad cylindrical, broadly cylindrical, yellowish to dark brown; 11–14 transverse septa, and 1–2 longitudinal septum in each cell | 27–36 × 7.5–13 μm, oblong to broadly fusiform, straight, sometimes slightly curved, hyaline, becoming pale brown to yellowish brown; 9–13 transverse septa, 1–2 longitudinal septa in each row | 35–42 × 9–15 μm, oblong to broadly fusiform, slightly curved, pale to yellowish brown to brownness; 7–13-transversally septate, 5–21-vertical septate, 1–5 longitudinal septa in each row |
Sordariomycetes O.E. Erikss. & Winka
Diaporthomycetidae Senan., Maharachch. & K.D. Hyde
Diaporthales Nannf
Synnemasporellaceae X.L. Fan & J.D.P. Bezerra
Fan et al. (2018) introduced this family to accommodate the holomorphic genus, Synnemasporella (with type species S.toxicodendri X.L. Fan & J.D.P. Bezerra). Currently, the family comprises only one genus (Wijayawardene et al. 2022a).
. Synnemasporella
X.L. Fan & J.D.P. Bezerra
244B4403-562E-5341-9B10-9F48C9F1669A
Index Fungorum: IF823995
Notes.
The genus Synnemasporella is a pleomorphic taxon that exhibits both sexual and asexual morphs (Fan et al. 2018). Currently, the genus comprises two species. The asexual morphs of S.aculeans X.L. Fan & J.D.P. Bezerra were reported with both coelomycetous and hyphomycetous morphs (Fan et al. 2018). However, the second species S.toxicodendri was reported only with its hyphomycetous morph.
. Synnemasporella fanii
Wijayaw., G.Q. Zhang & D.Q. Dai sp. nov.
97291E48-5319-5A1A-859F-166DD5549A28
Index Fungorum: IF901552
Figure 6.
Synnemasporellafanii (MHCU 23-0271, holotype) a, b habit of synnemata on branches c, d longitudinal section of synnemata e–h conidiophores and conidiogenous cells i conidiophores showing septa j–m conidiogenous cells. n–p conidia q germinating conidia r, s colony on PDA (r above s below). Scale bars: 2 mm (b); 300 μm (c); 400 μm (d); 10 μm (e, h); 20 μm (f, g); 15 μm (i); 25 μm (j–m, q); 30 μm (n–p).
Etymology.
Named after Dr. Xin-Lei Fan, the mycologist who introduced the genus, to recognize his outstanding contribution to mycology in China.
Holotype.
MHCU 23-0271.
Description.
Saprobic on twigs of an unknown woody plant. Sexual morph: undetermined. Asexual morph: hyphomycetous. Conidiomata synnematous. Synnemata 1000–1300 µm high, 110–360 µm diam., long and determinate, pale to brown, straight, occasionally curved, composed of parallelly and compactly arranged conidiophores. Conidiophores 30–70 µm long × 4.5–6.5 µm wide, hyaline to pale brown, aggregated, straight to curved. Conidiogenous cells 1.5–3.5 × 0.5–2.5 µm, enteroblastic, with a minute collarette at the tip, hyaline to pale brown, straight to curved, cylindrical, arranged adjacent to one another at the fertile end of the synnema, with each conidiogenous cells producing one conidium. Conidia 23–37 × 11–17 µm (x̄¯ = 30 × 15 µm, n = 20), cylindrical to oblong-cylindrical, 1–3 septate, slightly constricted at septa, straight to slightly curved, with a discrete hilum, smooth-walled, multiguttulate, pale brown to brown.
Culture characteristics.
Conidia germinating on PDA within 24 h. Colonies growing on PDA, reaching reached 30–40 mm diam. after 14 days at 27 °C, circular, initially white, becoming sepia on the bottom after 7 days, with an irregular edge, texture uniform.
Material examined.
China. Yunnan Province, Qujing City, Zhujiangyuan Nature Reserve, 25°30′N, 103°45′E, 01 September 2023, Gui-Qing Zhang & Nalin N. Wijayawardene, RM17 (MHCU 23-0271, holotype), ex-type ZHKUCC 23-1018; Ibid. (GMB 1001, isotype), ex-isotype GMBCC1001.
GenBank numbers.
Еx-type (ZHKUCC 23-1018): PP060496 (ITS); PP060510 (LSU); PP035537 (tef1-α); PP035545 (rpb2), ex-isotype (GMBCC1001): PP067150 (ITS); PP067155 (LSU); PP068811 (tef1-α); PP084097 (rpb2).
Note.
The phylogenetic analyses of the combined dataset of ITS, LSU, rpb2 and tef1-α gene regions (Fig. 3) showed that our isolates (ZHKUCC 23-1018 (ex-type) and GMBCC1001) belonged to the genus Synnemasporella (Fig. 3). Synnemasporellafanii clustered with S.toxicodendri (CFCC 52097 (isotype) and CFCC 52098) with moderate statistical supports (ML 68% and 0.95 PP). Morphologically, Synnemasporellafanii shares similar characteristics in its synnemata with S.toxicodendri and S.aculeans. Furthermore, S.fanii can be distinguished from S.toxicodendri and S.aculeans by having 1–3-septate conidia. Besides, in both two species of this genus, the form of the conidiogenous cells cannot be discerned well from Fan et al. (2018); it is not certain whether the two species have enteroblastic conidiogenous cells similar to our strain. The other differences are provided in Table 6. Based on morphology and phylogeny, we established this new collection as a novel species of Synnemasporella.
Table 6.
Comparison of morphological characteristics of Synnemasporella species.
| Morphological character | Species name and reference | ||
|---|---|---|---|
| Synnemasporellaaculeans (Fan et al. 2018) | S.fanii (This study) | S.toxicodendri (Fan et al. 2018) | |
| Synnemata | 1100–1500 µm high, 200–400 µm diam., pale to brown, straight to curved, parallel | 1000–1300 µm high, 110–360 µm diam., long and determinate, pale to brown, straight, occasionally curved, parallel | 1200–1800 µm high, 150–300 µm diam., pale to brown, straight to curved, parallel |
| Conidiophores | 20–30 µm, aggregated, aseptate, straight to curved | 30–70 µm long, 4.5–6.5 µm wide, aggregated, septate, straight to curved | 20–30 µm, aggregated, aseptate, straight to curved |
| Conidiogenous cells | Cylindrical, hyaline | Cylindrical, hyaline, enteroblastic, straight to curved | Cylindrical, hyaline |
| Conidia | 8–10(–11) × 3–3.5 µm, oblong-cylindrical, aseptate | 23–37 × 11–17 µm, cylindrical to oblong-cylindrical, 1–3 septate, slightly curved | 6–8 × 2.5–4 µm, cylindrical to oblong-cylindrical, aseptate |
| Culture characters | Regular edge; texture initially uniform, producing concentric circle on the margin after 3 days | Irregular edge, circular, initially white, becoming sepia on the bottom after one week | Irregular edge; texture initially uniform, producing concentric circles after 3 weeks |
Discussion
Zhujiangyuan Nature Reserve in Yunnan Province, China, harbours a large number of native evergreen and deciduous plant species and we predict this region has higher fungal diversity, although many are yet to be discovered (Feng and Yang 2018; Luo et al. 2018; Dai et al. 2019, 2022; Wijayawardene et al. 2021, 2022c). Wijayawardene et al. (2022b) emphasized the importance of collecting materials from under-studied geographical locations as even, some extensively studied hosts could still harbour novel taxa. A few saprobic fungal taxa have been discovered on woody litter in the Zhujiangyuan Nature Reserve but leaf litter inhabiting fungi have been poorly studied in this region. Besides, less attention has been given to saprobic fungi on woody litter in riverine habitats. Thus, a comprehensive study of microfungi in this region is most warranted. Further, morphology-based taxonomic information and phylogenetic sequencing data are needed to clarify their correct taxonomy, phylogeny, and functional biodiversity.
Taxa of Didymosphaeriaceae are often reported as endophytic, pathogenic or saprobic on a wide range of plant hosts (Gonçalves et al. 2019; Hongsanan et al. 2020). Based on the morphology, and phylogenetic analyses, taxa of Didymosphaeriaceae were fairly well-studied and currently, 33 genera have been accepted in Didymosphaeriaceae (Wijayawardene et al. 2022a). However, more new taxa are waiting to be discovered from monotypic genera such as Barria Z.Q. Yuan, Cylindroaseptospora Jayasiri, E.B.G. Jones & K.D. Hyde, Kalmusibambusa Phook., Tennakoon, Thambug. & K.D. Hyde, Lineostroma H.J. Swart, Neptunomyces M. Gonçalves, T. Vicente & A. Alves, Vicosamyces Firmino, A.R. Machado & O.L. Pereira, and Xenocamarosporium Crous & M.J. Wingf. In this study, we introduced a novel species of Spegazzinia, viz., S.zhujiangyuanensis (ZHKUCC 23-1020 (ex-type) and GMBCC1002). Morphologically, our new collections show somewhat similar micro-morphological characters to S.jinghaensis (with indistinguishable conidiomata, conidiogenous cells and conidiophores of α conidia), but can be separated by its conidiophores of β conidia). Phylogenetically, our new strains S.zhujiangyuanensis (ZHKUCC 23-1020 (ex-type) and GMBCC1002) were grouped as the sister clade to S.jinghaensis (KUMCC 21-0495 (ex-type) and KMUCC 21-0496), with distinct, high statistical values (94% ML bootstrap and 1.00 PP) (Fig. 1). Therefore, based on morphological characteristics and phylogenetic evidence (Fig. 1; based on ITS, LSU, SSU, and tef1-α regions), we introduce Spegazziniazhujiangyuanensis as a new species.
Phaeoseptaceae was introduced by Hyde et al. (2018) to accommodate Phaeoseptum (type genus), Lignosphaeria Boonmee, Thambug. & K.D. Hyde, and Neolophiostoma Boonmee & K.D. Hyde. Currently, Phaeoseptaceae comprises only two genera, i.e. Phaeoseptum and Pleopunctum N.G. Liu, K.D. Hyde & J.K. Liu (Wijayawardene et al. 2022a). In this study, we introduce a novel species of Phaeoseptum (Phaeoseptaceae), viz., P.zhujiangyuanense, which shares similar characteristics with P.mali and P.manglicola in their ascomata, asci and ascospore, and their overlapping dimensions, which fit the characters of Phaeoseptum well. However, based on morphological differences (Table 5) and phylogenetic analyses (Fig. 2), our collection can be distinguished from the other known species. Thus, we introduced P.zhujiangyuanense as a novel species in Phaeoseptum.
Synnemasporellaceae was introduced by Fan et al. (2018) to accommodate the genus Synnemasporella. The genus was reported with its both asexual and sexual morphs. The asexual morphs of type species of Synnemasporella, S.toxicodendri was reported with both coelomycetous and hyphomycetous morphs on the same host material (Fan et al. 2018). However, the second species, S.aculeans was reported only with a hyphomycetous morph. However, both species of this genus were not mentioned with the form of conidiogenous cells. In this study, our new species, S.fanii is found with only a hyphomycetous morph, which fits well with the characteristics of Synnemasporella. Synnemasporellafanii shares similarities with S.toxicodendri and S.aculeans in their synnemata but it can be significantly distinguished by their large-sized, 1–3-septate conidia, and possible enteroblastic conidiogenous cells. Synnemasporella is abundant as a hyphomycetous morph but further collections are essential to confirm this assumption.
Supplementary Material
Acknowledgments
The authors would like to thank Dr. Shaun Pennycook and Prof. Jayarama D. Bhat for their advice on nomenclature and taxonomy respectively.
Citation
Zhang G-Q, Wijayawardene NN, Han L-H, Kumla J, Suwannarach N, Li Q, Elgorban AM, Moussa IM, Coleine C, Dai D-Q (2024) Three novel woody litter inhabiting fungi in Didymosphaeriaceae, Phaeoseptaceae and Synnemasporellaceae from Zhujiangyuan Nature Reserve, Yunnan Province, Republic of China. MycoKeys 106: 173–200. https://doi.org/10.3897/mycokeys.106.123105
Funding Statement
The authors are grateful to High-Level Talent Recruitment Plan of Yunnan Provinces (“Young Talents” Program and “High-End Foreign Experts” Program), Mee-mann Chang Academician Workstation in Yunnan Province, (Grant No. 202205AF150002), and Science and technology plan project of Science and Technology Department of Yunnan Province (Grant No. 202305AC350252, 20210BA070001-076) for support. This work was supported by the Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origion of the Pearl River. Jaturong and Nakarin thank Chiang Mai University for partially support. The authors extend their appreciation to the Researchers supporting Project Number (RSPD2024R741) King Saud University, Riyadh, Saudi Arabia.
Contributor Information
Nalin N. Wijayawardene, Email: nalinwijayawardene@yahoo.com.
Dong-Qin Dai, Email: cicidaidongqin@gmail.com.
Additional information
Conflict of interest
The authors have declared that no competing interests exist.
Ethical statement
No ethical statement was reported.
Funding
The authors are grateful to High-Level Talent Recruitment Plan of Yunnan Provinces (“Young Talents” Program and “High-End Foreign Experts” Program), Mee-mann Chang Academician Workstation in Yunnan Province, (Grant No. 202205AF150002), and Science and technology plan project of Science and Technology Department of Yunnan Province (Grant No. 202305AC350252, 20210BA070001-076) for support. This work was supported by the Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origion of the Pearl River. Jaturong and Nakarin thank Chiang Mai University for partially support. The authors extend their appreciation to the Researchers supporting Project Number (RSPD2024R741) King Saud University, Riyadh, Saudi Arabia.
Author contributions
Data curation: LHH. Funding acquisition: AME. Project administration: IMM, QL. Writing – original draft: GQZ. Writing – review and editing: NNW, JK, NS, CC, DQD.
Author ORCIDs
Gui-Qing Zhang https://orcid.org/0000-0001-5354-0607
Nalin N. Wijayawardene https://orcid.org/0000-0003-0522-5498
Li-Hong Han https://orcid.org/0000-0002-6127-0915
Jaturong Kumla https://orcid.org/0000-0002-3673-6541
Nakarin Suwannarach https://orcid.org/0000-0002-2653-1913
Qiang Li https://orcid.org/0000-0002-9735-8214
Abdallah M. Elgorban https://orcid.org/0000-0003-3664-7853
Ihab M. Moussa https://orcid.org/0000-0001-9050-2079
Claudia Coleine https://orcid.org/0000-0002-9289-6179
Dong-Qin Dai https://orcid.org/0000-0001-8935-8807
Data availability
All of the data that support the findings of this study are available in the main text.
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Data Availability Statement
All of the data that support the findings of this study are available in the main text.






