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. 1992 Jan 1;281(Pt 1):231–237. doi: 10.1042/bj2810231

Purification and characterization of a nutritionally controlled endodeoxyribonuclease from Streptomyces glaucescens.

J F Aparicio 1, C Hardisson 1, J Sánchez 1
PMCID: PMC1130666  PMID: 1731760

Abstract

Streptomyces glaucescens has a DNAase whose synthesis is under nutritional control. We have purified this enzyme to apparent homogeneity by phosphocellulose chromatography followed by heparin-agarose, Cibacron Blue F3-GA-Sepharose and Sephadex G-75 chromatography and MonoQ f.p.l.c. The enzyme had an apparent Mr of 39,600 and a pI of approx. 8.15. The Mr of the native enzyme estimated by gel chromatography was 49,000. The DNAase had a pH optimum of 7.5 and an absolute requirement for bivalent cations in the reaction buffer. It was inhibited by high salt concentrations, chelating agents or phosphate-containing compounds and was stimulated by dimethyl sulphoxide. The activity was greatly diminished unless dithiothreitol or 2-mercaptoethanol was included in the reaction mixture. Reagents such as Hg2+ or iodoacetate strongly inhibited the enzyme. The nuclease hydrolysed both double-stranded and single-stranded DNA, showing greater affinity for double-stranded DNA, and no detectable hydrolysis of RNA. The enzyme produced nicks in double-stranded DNA, generating 3'-hydroxy and 5'-phosphate termini, and degraded circular DNA.

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Selected References

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  1. Aparicio J. F., De los Reyes-Gavilán C. G., Barbés C., Hardisson C., Sánchez J. A non-specific deoxyribonuclease with restriction function in Streptomyces glaucescens. J Gen Microbiol. 1988 Aug;134(8):2345–2351. doi: 10.1099/00221287-134-8-2345. [DOI] [PubMed] [Google Scholar]
  2. Berkner K. L., Folk W. R. Polynucleotide kinase exchange as an assay for class II restriction endonucleases. Methods Enzymol. 1980;65(1):28–36. doi: 10.1016/s0076-6879(80)65007-1. [DOI] [PubMed] [Google Scholar]
  3. Blakesley R. W., Dodgson J. B., Nes I. F., Wells R. D. Duplex regions in "single-stranded" phiX174 DNA are cleaved by a restriction endonuclease from Haemophilus aegyptius. J Biol Chem. 1977 Oct 25;252(20):7300–7306. [PubMed] [Google Scholar]
  4. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  5. Brenowitz M., Senear D. F., Shea M. A., Ackers G. K. Quantitative DNase footprint titration: a method for studying protein-DNA interactions. Methods Enzymol. 1986;130:132–181. doi: 10.1016/0076-6879(86)30011-9. [DOI] [PubMed] [Google Scholar]
  6. Chaconas G., van de Sande J. H. 5'-32P labeling of RNA and DNA restriction fragments. Methods Enzymol. 1980;65(1):75–85. doi: 10.1016/s0076-6879(80)65012-5. [DOI] [PubMed] [Google Scholar]
  7. Engel P., Ullah A. H. Purification and characterization of an endonuclease (E.C. 3.1.30.1) from Streptomyces tendae. Prep Biochem. 1988;18(2):137–152. doi: 10.1080/00327488808062517. [DOI] [PubMed] [Google Scholar]
  8. Fuchs R., Blakesley R. Guide to the use of type II restriction endonucleases. Methods Enzymol. 1983;100:3–38. doi: 10.1016/0076-6879(83)00043-9. [DOI] [PubMed] [Google Scholar]
  9. Greene P. J., Heyneker H. L., Bolivar F., Rodriguez R. L., Betlach M. C., Covarrubias A. A., Backman K., Russel D. J., Tait R., Boyer H. W. A general method for the purification of restriction enzymes. Nucleic Acids Res. 1978 Jul;5(7):2373–2380. doi: 10.1093/nar/5.7.2373. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Hardisson C., Manzanal M. B., Salas J. A., Suárez J. E. Fine structure, physiology and biochemistry of arthrospore germination in Streptomyces antibioticus. J Gen Microbiol. 1978 Apr;105(2):203–214. doi: 10.1099/00221287-105-2-203. [DOI] [PubMed] [Google Scholar]
  11. Hnilica L. S., Grimes S. R., Chiu J. F. Electrophoretic fractionation of histones utilizing starch gels and sodium dodecyl sulfate--urea gels. Methods Cell Biol. 1978;17:211–222. [PubMed] [Google Scholar]
  12. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  13. Morrissey J. H. Silver stain for proteins in polyacrylamide gels: a modified procedure with enhanced uniform sensitivity. Anal Biochem. 1981 Nov 1;117(2):307–310. doi: 10.1016/0003-2697(81)90783-1. [DOI] [PubMed] [Google Scholar]
  14. Roychoudhury R., Wu R. Terminal transferase-catalyzed addition of nucleotides to the 3' termini of DNA. Methods Enzymol. 1980;65(1):43–62. doi: 10.1016/s0076-6879(80)65009-5. [DOI] [PubMed] [Google Scholar]
  15. Smith H. O., Marley G. M. Purification and properties of HindII and HindIII endonucleases from Haemophilus influenzae Rd. Methods Enzymol. 1980;65(1):104–108. doi: 10.1016/s0076-6879(80)65015-0. [DOI] [PubMed] [Google Scholar]
  16. Spector T. Refinement of the coomassie blue method of protein quantitation. A simple and linear spectrophotometric assay for less than or equal to 0.5 to 50 microgram of protein. Anal Biochem. 1978 May;86(1):142–146. doi: 10.1016/0003-2697(78)90327-5. [DOI] [PubMed] [Google Scholar]
  17. Sànchez J., Barbès C., Hernandez A., de los Reyes Gavilàn C. R., Hardisson C. Restriction-modification systems in Streptomyces antibioticus. Can J Microbiol. 1985 Oct;31(10):942–946. doi: 10.1139/m85-177. [DOI] [PubMed] [Google Scholar]
  18. Yanagida T., Ogawara H. Deoxyribonucleases in Streptomyces. J Antibiot (Tokyo) 1980 Oct;33(10):1206–1207. doi: 10.7164/antibiotics.33.1206. [DOI] [PubMed] [Google Scholar]

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