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. 1995 Jul 15;309(Pt 2):431–436. doi: 10.1042/bj3090431

Breakdown of the stereospecificity of DD-peptidases and beta-lactamases with thiolester substrates.

C Damblon 1, G H Zhao 1, M Jamin 1, P Ledent 1, A Dubus 1, M Vanhove 1, X Raquet 1, L Christiaens 1, J M Frère 1
PMCID: PMC1135750  PMID: 7626006

Abstract

With peptide analogues of their natural substrates (the glycopeptide units of nascent peptidoglycan), the DD-peptidases exhibit a strict preference for D-Ala-D-Xaa C-termini. Gly is tolerated as the C-terminal residue, but with a significantly decreased activity. These enzymes were also known to hydrolyse various ester and thiolester analogues of their natural substrates. Some thiolesters with a C-terminal leaving group that exhibited L stereochemistry were significantly hydrolysed by some of the enzymes, particularly the Actinomadura R39 DD-peptidase, but the strict specificity for a D residue in the penultimate position was fully retained. These esters and thiolesters also behave as substrates for beta-lactamases. In this case, thiolesters exhibiting L stereochemistry in the ultimate position could also be hydrolysed, mainly by the class-C and class-D enzymes. However, more surprisingly, the class-C Enterobacter cloacae P99 beta-lactamase also hydrolysed thiolesters containing an L residue in the penultimate position, sometimes with a higher efficiency than the D isomer.

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Selected References

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  1. Adam M., Damblon C., Jamin M., Zorzi W., Dusart V., Galleni M., el Kharroubi A., Piras G., Spratt B. G., Keck W. Acyltransferase activities of the high-molecular-mass essential penicillin-binding proteins. Biochem J. 1991 Oct 15;279(Pt 2):601–604. doi: 10.1042/bj2790601. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Adam M., Damblon C., Plaitin B., Christiaens L., Frère J. M. Chromogenic depsipeptide substrates for beta-lactamases and penicillin-sensitive DD-peptidases. Biochem J. 1990 Sep 1;270(2):525–529. doi: 10.1042/bj2700525. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bishop R. E., Weiner J. H. Coordinate regulation of murein peptidase activity and AmpC beta-lactamase synthesis in Escherichia coli. FEBS Lett. 1992 Jun 15;304(2-3):103–108. doi: 10.1016/0014-5793(92)80598-b. [DOI] [PubMed] [Google Scholar]
  4. Bugg T. D., Wright G. D., Dutka-Malen S., Arthur M., Courvalin P., Walsh C. T. Molecular basis for vancomycin resistance in Enterococcus faecium BM4147: biosynthesis of a depsipeptide peptidoglycan precursor by vancomycin resistance proteins VanH and VanA. Biochemistry. 1991 Oct 29;30(43):10408–10415. doi: 10.1021/bi00107a007. [DOI] [PubMed] [Google Scholar]
  5. De Meester F., Joris B., Reckinger G., Bellefroid-Bourguignon C., Frère J. M., Waley S. G. Automated analysis of enzyme inactivation phenomena. Application to beta-lactamases and DD-peptidases. Biochem Pharmacol. 1987 Jul 15;36(14):2393–2403. doi: 10.1016/0006-2952(87)90609-5. [DOI] [PubMed] [Google Scholar]
  6. Dubus A., Wilkin J. M., Raquet X., Normark S., Frère J. M. Catalytic mechanism of active-site serine beta-lactamases: role of the conserved hydroxy group of the Lys-Thr(Ser)-Gly triad. Biochem J. 1994 Jul 15;301(Pt 2):485–494. doi: 10.1042/bj3010485. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Frère J. M., Moreno R., Ghuysen J. M. Molecular weight, amino acid composition and physicochemical properties of the exocellular DD-carboxypeptidase-transpeptidase of Streptomyces R39. Biochem J. 1974 Oct;143(1):233–240. doi: 10.1042/bj1430233. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Galleni M., Amicosante G., Frère J. M. A survey of the kinetic parameters of class C beta-lactamases. Cephalosporins and other beta-lactam compounds. Biochem J. 1988 Oct 1;255(1):123–129. doi: 10.1042/bj2550123. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Holzhütter H. G., Colosimo A. SIMFIT: a microcomputer software-toolkit for modelistic studies in biochemistry. Comput Appl Biosci. 1990 Jan;6(1):23–28. doi: 10.1093/bioinformatics/6.1.23. [DOI] [PubMed] [Google Scholar]
  10. Jamin M., Adam M., Damblon C., Christiaens L., Frère J. M. Accumulation of acyl-enzyme in DD-peptidase-catalysed reactions with analogues of peptide substrates. Biochem J. 1991 Dec 1;280(Pt 2):499–506. doi: 10.1042/bj2800499. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Jamin M., Damblon C., Millier S., Hakenbeck R., Frère J. M. Penicillin-binding protein 2x of Streptococcus pneumoniae: enzymic activities and interactions with beta-lactams. Biochem J. 1993 Jun 15;292(Pt 3):735–741. doi: 10.1042/bj2920735. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Joris B., De Meester F., Galleni M., Reckinger G., Coyette J., Frere J. M., Van Beeumen J. The beta-lactamase of Enterobacter cloacae P99. Chemical properties, N-terminal sequence and interaction with 6 beta-halogenopenicillanates. Biochem J. 1985 May 15;228(1):241–248. doi: 10.1042/bj2280241. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lamotte-Brasseur J., Knox J., Kelly J. A., Charlier P., Fonzé E., Dideberg O., Frére J. M. The structures and catalytic mechanisms of active-site serine beta-lactamases. Biotechnol Genet Eng Rev. 1994;12:189–230. doi: 10.1080/02648725.1994.10647912. [DOI] [PubMed] [Google Scholar]
  14. Ledent P., Raquet X., Joris B., Van Beeumen J., Frère J. M. A comparative study of class-D beta-lactamases. Biochem J. 1993 Jun 1;292(Pt 2):555–562. doi: 10.1042/bj2920555. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Leyh-Bouille M., Coyette J., Ghuysen J. M., Idczak J., Perkins H. R., Nieto M. Penicillin-sensitive DD-carboxypeptidase from Streptomyces strain R 61. Biochemistry. 1971 May 25;10(11):2163–2170. doi: 10.1021/bi00787a032. [DOI] [PubMed] [Google Scholar]
  16. Leyh-Bouille M., Nakel M., Frère J. M., Johnson K., Ghuysen J. M., Nieto M., Perkins H. R. Penicillin-sensitive DD-carboxypeptidases from Streptomyces strains R39 and K11. Biochemistry. 1972 Mar 28;11(7):1290–1298. doi: 10.1021/bi00757a027. [DOI] [PubMed] [Google Scholar]
  17. Lobkovsky E., Moews P. C., Liu H., Zhao H., Frere J. M., Knox J. R. Evolution of an enzyme activity: crystallographic structure at 2-A resolution of cephalosporinase from the ampC gene of Enterobacter cloacae P99 and comparison with a class A penicillinase. Proc Natl Acad Sci U S A. 1993 Dec 1;90(23):11257–11261. doi: 10.1073/pnas.90.23.11257. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Matagne A., Misselyn-Bauduin A. M., Joris B., Erpicum T., Granier B., Frère J. M. The diversity of the catalytic properties of class A beta-lactamases. Biochem J. 1990 Jan 1;265(1):131–146. doi: 10.1042/bj2650131. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Raquet X., Lamotte-Brasseur J., Fonzé E., Goussard S., Courvalin P., Frère J. M. TEM beta-lactamase mutants hydrolysing third-generation cephalosporins. A kinetic and molecular modelling analysis. J Mol Biol. 1994 Dec 16;244(5):625–639. doi: 10.1006/jmbi.1994.1756. [DOI] [PubMed] [Google Scholar]
  20. Wilkin J. M., Jamin M., Damblon C., Zhao G. H., Joris B., Duez C., Frère J. M. The mechanism of action of DD-peptidases: the role of tyrosine-159 in the Streptomyces R61 DD-peptidase. Biochem J. 1993 Apr 15;291(Pt 2):537–544. doi: 10.1042/bj2910537. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Xu Y., Soto G., Adachi H., van der Linden M. P., Keck W., Pratt R. F. Relative specificities of a series of beta-lactam-recognizing enzymes towards the side-chains of penicillins and of acyclic thioldepsipeptides. Biochem J. 1994 Sep 15;302(Pt 3):851–856. doi: 10.1042/bj3020851. [DOI] [PMC free article] [PubMed] [Google Scholar]

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