Skip to main content
The EMBO Journal logoLink to The EMBO Journal
. 1998 Jul 1;17(13):3651–3659. doi: 10.1093/emboj/17.13.3651

A glutamic finger in the guanine nucleotide exchange factor ARNO displaces Mg2+ and the beta-phosphate to destabilize GDP on ARF1.

S Béraud-Dufour 1, S Robineau 1, P Chardin 1, S Paris 1, M Chabre 1, J Cherfils 1, B Antonny 1
PMCID: PMC1170701  PMID: 9649435

Abstract

The Sec7 domain of the guanine nucleotide exchange factor ARNO (ARNO-Sec7) is responsible for the exchange activity on the small GTP-binding protein ARF1. ARNO-Sec7 forms a stable complex with the nucleotide-free form of [Delta17]ARF1, a soluble truncated form of ARF1. The crystal structure of ARNO-Sec7 has been solved recently, and a site-directed mutagenesis approach identified a hydrophobic groove and an adjacent hydrophilic loop as the ARF1-binding site. We show that Glu156 in the hydrophilic loop of ARNO-Sec7 is involved in the destabilization of Mg2+ and GDP from ARF1. The conservative mutation E156D and the charge reversal mutation E156K reduce the exchange activity of ARNO-Sec7 by several orders of magnitude. Moreover, [E156K]ARNO-Sec7 forms a complex with the Mg2+-free form of [Delta17]ARF1-GDP without inducing the release of GDP. Other mutations in ARNO-Sec7 and in [Delta17]ARF1 suggest that prominent hydrophobic residues of the switch I region of ARF1 insert into the groove of the Sec7 domain, and that Lys73 of the switch II region of ARF1 forms an ion pair with Asp183 of ARNO-Sec7.

Full Text

The Full Text of this article is available as a PDF (547.2 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Amor J. C., Harrison D. H., Kahn R. A., Ringe D. Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature. 1994 Dec 15;372(6507):704–708. doi: 10.1038/372704a0. [DOI] [PubMed] [Google Scholar]
  2. Antonny B., Beraud-Dufour S., Chardin P., Chabre M. N-terminal hydrophobic residues of the G-protein ADP-ribosylation factor-1 insert into membrane phospholipids upon GDP to GTP exchange. Biochemistry. 1997 Apr 15;36(15):4675–4684. doi: 10.1021/bi962252b. [DOI] [PubMed] [Google Scholar]
  3. Azuma Y., Seino H., Seki T., Uzawa S., Klebe C., Ohba T., Wittinghofer A., Hayashi N., Nishimoto T. Conserved histidine residues of RCC1 are essential for nucleotide exchange on Ran. J Biochem. 1996 Jul;120(1):82–91. doi: 10.1093/oxfordjournals.jbchem.a021397. [DOI] [PubMed] [Google Scholar]
  4. Burstein E. S., Brondyk W. H., Macara I. G. Amino acid residues in the Ras-like GTPase Rab3A that specify sensitivity to factors that regulate the GTP/GDP cycling of Rab3A. J Biol Chem. 1992 Nov 15;267(32):22715–22718. [PubMed] [Google Scholar]
  5. Camus C., Hermann-Le Denmat S., Jacquet M. Identification of guanine exchange factor key residues involved in exchange activity and Ras interaction. Oncogene. 1995 Sep 7;11(5):951–959. [PubMed] [Google Scholar]
  6. Chardin P., Paris S., Antonny B., Robineau S., Béraud-Dufour S., Jackson C. L., Chabre M. A human exchange factor for ARF contains Sec7- and pleckstrin-homology domains. Nature. 1996 Dec 5;384(6608):481–484. doi: 10.1038/384481a0. [DOI] [PubMed] [Google Scholar]
  7. Cherfils J., Ménétrey J., Mathieu M., Le Bras G., Robineau S., Béraud-Dufour S., Antonny B., Chardin P. Structure of the Sec7 domain of the Arf exchange factor ARNO. Nature. 1998 Mar 5;392(6671):101–105. doi: 10.1038/32210. [DOI] [PubMed] [Google Scholar]
  8. Franco M., Chardin P., Chabre M., Paris S. Myristoylation is not required for GTP-dependent binding of ADP-ribosylation factor ARF1 to phospholipids. J Biol Chem. 1993 Nov 25;268(33):24531–24534. [PubMed] [Google Scholar]
  9. Franco M., Chardin P., Chabre M., Paris S. Myristoylation of ADP-ribosylation factor 1 facilitates nucleotide exchange at physiological Mg2+ levels. J Biol Chem. 1995 Jan 20;270(3):1337–1341. doi: 10.1074/jbc.270.3.1337. [DOI] [PubMed] [Google Scholar]
  10. Franco M., Chardin P., Chabre M., Paris S. Myristoylation-facilitated binding of the G protein ARF1GDP to membrane phospholipids is required for its activation by a soluble nucleotide exchange factor. J Biol Chem. 1996 Jan 19;271(3):1573–1578. doi: 10.1074/jbc.271.3.1573. [DOI] [PubMed] [Google Scholar]
  11. Greasley S. E., Jhoti H., Teahan C., Solari R., Fensome A., Thomas G. M., Cockcroft S., Bax B. The structure of rat ADP-ribosylation factor-1 (ARF-1) complexed to GDP determined from two different crystal forms. Nat Struct Biol. 1995 Sep;2(9):797–806. doi: 10.1038/nsb0995-797. [DOI] [PubMed] [Google Scholar]
  12. Hurley J. H., Dean A. M., Sohl J. L., Koshland D. E., Jr, Stroud R. M. Regulation of an enzyme by phosphorylation at the active site. Science. 1990 Aug 31;249(4972):1012–1016. doi: 10.1126/science.2204109. [DOI] [PubMed] [Google Scholar]
  13. Jacquet E., Baouz S., Parmeggiani A. Characterization of mammalian C-CDC25Mm exchange factor and kinetic properties of the exchange reaction intermediate p21.C-CDC25Mm. Biochemistry. 1995 Sep 26;34(38):12347–12354. doi: 10.1021/bi00038a031. [DOI] [PubMed] [Google Scholar]
  14. John J., Rensland H., Schlichting I., Vetter I., Borasio G. D., Goody R. S., Wittinghofer A. Kinetic and structural analysis of the Mg(2+)-binding site of the guanine nucleotide-binding protein p21H-ras. J Biol Chem. 1993 Jan 15;268(2):923–929. [PubMed] [Google Scholar]
  15. Kawashima T., Berthet-Colominas C., Wulff M., Cusack S., Leberman R. The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 A resolution. Nature. 1996 Feb 8;379(6565):511–518. doi: 10.1038/379511a0. [DOI] [PubMed] [Google Scholar]
  16. Klarlund J. K., Rameh L. E., Cantley L. C., Buxton J. M., Holik J. J., Sakelis C., Patki V., Corvera S., Czech M. P. Regulation of GRP1-catalyzed ADP ribosylation factor guanine nucleotide exchange by phosphatidylinositol 3,4,5-trisphosphate. J Biol Chem. 1998 Jan 23;273(4):1859–1862. doi: 10.1074/jbc.273.4.1859. [DOI] [PubMed] [Google Scholar]
  17. Klebe C., Bischoff F. R., Ponstingl H., Wittinghofer A. Interaction of the nuclear GTP-binding protein Ran with its regulatory proteins RCC1 and RanGAP1. Biochemistry. 1995 Jan 17;34(2):639–647. doi: 10.1021/bi00002a031. [DOI] [PubMed] [Google Scholar]
  18. Klebe C., Prinz H., Wittinghofer A., Goody R. S. The kinetic mechanism of Ran--nucleotide exchange catalyzed by RCC1. Biochemistry. 1995 Oct 3;34(39):12543–12552. doi: 10.1021/bi00039a008. [DOI] [PubMed] [Google Scholar]
  19. Li R., Zheng Y. Residues of the Rho family GTPases Rho and Cdc42 that specify sensitivity to Dbl-like guanine nucleotide exchange factors. J Biol Chem. 1997 Feb 21;272(8):4671–4679. doi: 10.1074/jbc.272.8.4671. [DOI] [PubMed] [Google Scholar]
  20. Meacci E., Tsai S. C., Adamik R., Moss J., Vaughan M. Cytohesin-1, a cytosolic guanine nucleotide-exchange protein for ADP-ribosylation factor. Proc Natl Acad Sci U S A. 1997 Mar 4;94(5):1745–1748. doi: 10.1073/pnas.94.5.1745. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Milburn M. V., Tong L., deVos A. M., Brünger A., Yamaizumi Z., Nishimura S., Kim S. H. Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins. Science. 1990 Feb 23;247(4945):939–945. doi: 10.1126/science.2406906. [DOI] [PubMed] [Google Scholar]
  22. Morinaga N., Moss J., Vaughan M. Cloning and expression of a cDNA encoding a bovine brain brefeldin A-sensitive guanine nucleotide-exchange protein for ADP-ribosylation factor. Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):12926–12931. doi: 10.1073/pnas.94.24.12926. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Moss J., Vaughan M. Structure and function of ARF proteins: activators of cholera toxin and critical components of intracellular vesicular transport processes. J Biol Chem. 1995 May 26;270(21):12327–12330. doi: 10.1074/jbc.270.21.12327. [DOI] [PubMed] [Google Scholar]
  24. Mossessova E., Gulbis J. M., Goldberg J. Structure of the guanine nucleotide exchange factor Sec7 domain of human arno and analysis of the interaction with ARF GTPase. Cell. 1998 Feb 6;92(3):415–423. doi: 10.1016/s0092-8674(00)80933-2. [DOI] [PubMed] [Google Scholar]
  25. Pai E. F., Krengel U., Petsko G. A., Goody R. S., Kabsch W., Wittinghofer A. Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis. EMBO J. 1990 Aug;9(8):2351–2359. doi: 10.1002/j.1460-2075.1990.tb07409.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Paris S., Béraud-Dufour S., Robineau S., Bigay J., Antonny B., Chabre M., Chardin P. Role of protein-phospholipid interactions in the activation of ARF1 by the guanine nucleotide exchange factor Arno. J Biol Chem. 1997 Aug 29;272(35):22221–22226. doi: 10.1074/jbc.272.35.22221. [DOI] [PubMed] [Google Scholar]
  27. Park W., Mosteller R. D., Broek D. Amino acid residues in the CDC25 guanine nucleotide exchange factor critical for interaction with Ras. Mol Cell Biol. 1994 Dec;14(12):8117–8122. doi: 10.1128/mcb.14.12.8117. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Peyroche A., Paris S., Jackson C. L. Nucleotide exchange on ARF mediated by yeast Gea1 protein. Nature. 1996 Dec 5;384(6608):479–481. doi: 10.1038/384479a0. [DOI] [PubMed] [Google Scholar]
  29. Quilliam L. A., Hisaka M. M., Zhong S., Lowry A., Mosteller R. D., Han J., Drugan J. K., Broek D., Campbell S. L., Der C. J. Involvement of the switch 2 domain of Ras in its interaction with guanine nucleotide exchange factors. J Biol Chem. 1996 May 10;271(19):11076–11082. doi: 10.1074/jbc.271.19.11076. [DOI] [PubMed] [Google Scholar]
  30. Renault L., Nassar N., Vetter I., Becker J., Klebe C., Roth M., Wittinghofer A. The 1.7 A crystal structure of the regulator of chromosome condensation (RCC1) reveals a seven-bladed propeller. Nature. 1998 Mar 5;392(6671):97–101. doi: 10.1038/32204. [DOI] [PubMed] [Google Scholar]
  31. Verrotti A. C., Créchet J. B., Di Blasi F., Seidita G., Mirisola M. G., Kavounis C., Nastopoulos V., Burderi E., De Vendittis E., Parmeggiani A. RAS residues that are distant from the GDP binding site play a critical role in dissociation factor-stimulated release of GDP. EMBO J. 1992 Aug;11(8):2855–2862. doi: 10.1002/j.1460-2075.1992.tb05353.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Wang Y., Jiang Y., Meyering-Voss M., Sprinzl M., Sigler P. B. Crystal structure of the EF-Tu.EF-Ts complex from Thermus thermophilus. Nat Struct Biol. 1997 Aug;4(8):650–656. doi: 10.1038/nsb0897-650. [DOI] [PubMed] [Google Scholar]

Articles from The EMBO Journal are provided here courtesy of Nature Publishing Group

RESOURCES