Skip to main content
Biochemical Journal logoLink to Biochemical Journal
. 1968 Apr;107(3):353–359. doi: 10.1042/bj1070353

Sedimentation studies on the interaction of proflavine with deoxyribonucleic acid

P H Lloyd 1, R N Prutton 1, A R Peacocke 1
PMCID: PMC1198670  PMID: 5689838

Abstract

A method is described of using photography to measure the concentrations of a small ligand (proflavine) above and below the boundary of a macromolecule (DNA, both native and denatured) sedimenting in the ultracentrifuge. The measurements are used to determine the extent of the binding of proflavine to DNA, and the results compared with those obtained by a spectrophotometric method. The results obtained by the two methods agree within 10%, thus validating the spectrophotometric technique under these conditions. The variation of the sedimentation coefficient with the extent of binding of proflavine was also studied. The results are discussed in relation to previously observed changes in the viscosity of the solutions.

Full text

PDF
354

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Blake A., Peacocke A. R. Induced optical activity of various aminoacridines bound to DNA. Biopolymers. 1967;5(9):871–875. doi: 10.1002/bip.1967.360050909. [DOI] [PubMed] [Google Scholar]
  2. CAIRNS J. The application of autoradiography to the study of DNA viruses. Cold Spring Harb Symp Quant Biol. 1962;27:311–318. doi: 10.1101/sqb.1962.027.001.029. [DOI] [PubMed] [Google Scholar]
  3. Creeth J. M., Knight C. G. On the estimation of the shape of macromolecules from sedimentation and viscosity measurements. Biochim Biophys Acta. 1965 Jul 22;102(2):549–558. doi: 10.1016/0926-6585(65)90145-7. [DOI] [PubMed] [Google Scholar]
  4. Drummond D. S., Pritchard N. J., Simpson-Gildemeister V. F., Peacocke A. R. Interaction of aminoacridines with deoxyribonucleic acid: viscosity of the complexes. Biopolymers. 1966 Oct-Nov;4(9):971–987. doi: 10.1002/bip.1966.360040903. [DOI] [PubMed] [Google Scholar]
  5. Eigner J., Doty P. The native, denatured and renatured states of deoxyribonucleic acid. J Mol Biol. 1965 Jul;12(3):549–580. doi: 10.1016/s0022-2836(65)80312-6. [DOI] [PubMed] [Google Scholar]
  6. LAWLEY P. D. Interaction studies with DNA. IV. The binding of 5-aminoacridine studied fluorimetrically, and its comparison with the binding of rosaniline. Biochim Biophys Acta. 1956 Dec;22(3):451–458. doi: 10.1016/0006-3002(56)90054-3. [DOI] [PubMed] [Google Scholar]
  7. LOWRY O. H., ROSEBROUGH N. J., FARR A. L., RANDALL R. J. Protein measurement with the Folin phenol reagent. J Biol Chem. 1951 Nov;193(1):265–275. [PubMed] [Google Scholar]
  8. LUZZATI V., MASSON F., LERMAN L. S. Interaction of DNA and proflavine: a small-angle x-ray scattering study. J Mol Biol. 1961 Oct;3:634–639. doi: 10.1016/s0022-2836(61)80026-0. [DOI] [PubMed] [Google Scholar]
  9. Pritchard N. J., Blake A., Peacocke A. R. Modified intercalation model for the interaction of amino acridines and DNA. Nature. 1966 Dec 17;212(5068):1360–1361. doi: 10.1038/2121360a0. [DOI] [PubMed] [Google Scholar]
  10. SCHACHMAN H. K., GROPPER L., HANLON S., PUTNEY F. Ultracentrifuge studies with absorption optics. II. Incorporation of a monochromator and its application to the study of proteins and interacting systems. Arch Biochem Biophys. 1962 Oct;99:175–190. doi: 10.1016/0003-9861(62)90259-x. [DOI] [PubMed] [Google Scholar]
  11. SCHACHMAN H. K. THE ULTRACENTRIFUGE: PROBLEMS AND PROSPECTS. Biochemistry. 1963 Sep-Oct;2:887–905. doi: 10.1021/bi00905a001. [DOI] [PubMed] [Google Scholar]
  12. WEBB J. M. A sensitive method for the determination of ribonucleic acid in tissues and microorganisms. J Biol Chem. 1956 Aug;221(2):635–649. [PubMed] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

RESOURCES