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. 1987 Oct;117(2):157–171. doi: 10.1093/genetics/117.2.157

Identification of Sites Influencing the Folding and Subunit Assembly of the P22 Tailspike Polypeptide Chain Using Nonsense Mutations

Bentley Fane 1, Jonathan King 1
PMCID: PMC1203193  PMID: 2822533

Abstract

Amber mutations have been isolated and mapped to more than 60 sites in gene 9 of P22 encoding the thermostable phage tailspike protein. Gene 9 is the locus of over 30 sites of temperature sensitive folding (tsf) mutations, which affect intermediates in the chain folding and subunit association pathway. The phenotypes of the amber missense proteins produced on tRNA suppressor hosts inserting serine, glutamine, tryosine and leucine have been determined at different temperatures. Thirty-three of the sites are tolerant, producing functional proteins with any of the four amino acids inserted at the sites, independent of temperature. Tolerant sites are concentrated at the N-terminal end of the protein indicating that this region is not critical for conformation or function. Sixteen of the sites yield temperature sensitive missense proteins on at least one nonsense suppressing host. Most of the sites with ts phenotypes map to the central region of the gene which is also the region where most of the tsf mutations map. Mutations at 15 of the sites have a lethal phenotype on at least one tRNA suppressor host. For nine out of ten sites tested with at least one lethal phenotype, the primary defect was in the folding or subunit association of the missense polypeptide chain. This analysis of the tailspike missense proteins distinguishes three classes of amino acid sites in the polypeptide chain; residues whose side chains contribute little to folding, subunit assembly or function; residues critical for maintaining the folding and subunit assembly pathway at the high end of the temperature range of phage growth; and residues critical over the entire temperature range of growth.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Botstein D., Chan R. K., Waddell C. H. Genetics of bacteriophage P22. II. Gene order and gene function. Virology. 1972 Jul;49(1):268–282. doi: 10.1016/s0042-6822(72)80028-x. [DOI] [PubMed] [Google Scholar]
  2. CRAWFORD I. P., JOHNSON L. M. MUTANTS OF ESCHERICHIA COLI DEFECTIVE IN THE B PROTEIN OF TRYPTOPHAN SYNTHETASE. II. INTRAGENIC POSITION. Genetics. 1964 Feb;49:267–278. doi: 10.1093/genetics/49.2.267. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Coulondre C., Miller J. H. Genetic studies of the lac repressor. III. Additional correlation of mutational sites with specific amino acid residues. J Mol Biol. 1977 Dec 15;117(3):525–567. doi: 10.1016/0022-2836(77)90056-0. [DOI] [PubMed] [Google Scholar]
  4. Crawford I. P., Sikes S., Belser N. O., Martinez L. Mutants of Escherichia coli defective in the B protein of tryptophan synthetase. 3. Intragenic clustering. Genetics. 1970 Jun;65(2):201–211. doi: 10.1093/genetics/65.2.201. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. EDGAR R. S., DENHARDT G. H., EPSTEIN R. H. A COMPARATIVE GENETIC STUDY OF CONDITIONAL LETHAL MUTATIONS OF BACTERIOPHAGE T4D. Genetics. 1964 Apr;49:635–648. doi: 10.1093/genetics/49.4.635. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. EDGAR R. S., LIELAUSIS I. TEMPERATURE-SENSITIVE MUTANTS OF BACTERIOPHAGE T4D: THEIR ISOLATION AND GENETIC CHARACTERIZATION. Genetics. 1964 Apr;49:649–662. doi: 10.1093/genetics/49.4.649. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Israel J. V., Anderson T. F., Levine M. in vitro MORPHOGENESIS OF PHAGE P22 FROM HEADS AND BASE-PLATE PARTS. Proc Natl Acad Sci U S A. 1967 Feb;57(2):284–291. doi: 10.1073/pnas.57.2.284. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. King J., Yu M. H. Mutational analysis of protein folding pathways: the P22 tailspike endorhamnosidase. Methods Enzymol. 1986;131:250–266. doi: 10.1016/0076-6879(86)31044-9. [DOI] [PubMed] [Google Scholar]
  9. Miller J. H., Coulondre C., Farabaugh P. J. Correlation of nonsense sites in the lacI gene with specific codons in the nucleotide sequence. Nature. 1978 Aug 24;274(5673):770–775. doi: 10.1038/274770a0. [DOI] [PubMed] [Google Scholar]
  10. Miller J. H., Coulondre C., Hofer M., Schmeissner U., Sommer H., Schmitz A., Lu P. Genetic studies of the lac repressor. IX. Generation of altered proteins by the suppression of nonsence mutations. J Mol Biol. 1979 Jun 25;131(2):191–222. doi: 10.1016/0022-2836(79)90073-1. [DOI] [PubMed] [Google Scholar]
  11. Miller J. H., Ganem D., Lu P., Schmitz A. Genetic studies of the lac repressor. I. Correlation of mutational sites with specific amino acid residues: construction of a colinear gene-protein map. J Mol Biol. 1977 Jan 15;109(2):275–298. doi: 10.1016/s0022-2836(77)80034-x. [DOI] [PubMed] [Google Scholar]
  12. Poteete A. R., King J. Functions of two new genes in Salmonella phage P22 assembly. Virology. 1977 Feb;76(2):725–739. doi: 10.1016/0042-6822(77)90254-9. [DOI] [PubMed] [Google Scholar]
  13. SADLER J. R., NOVICK A. THE PROPERTIES OF REPRESSOR AND THE KINETICS OF ITS ACTION. J Mol Biol. 1965 Jun;12:305–327. doi: 10.1016/s0022-2836(65)80255-8. [DOI] [PubMed] [Google Scholar]
  14. Sauer R. T., Krovatin W., Poteete A. R., Berget P. B. Phage P22 tail protein: gene and amino acid sequence. Biochemistry. 1982 Nov 9;21(23):5811–5815. doi: 10.1021/bi00266a014. [DOI] [PubMed] [Google Scholar]
  15. Schmitz A., Coulondre C., Miller J. H. Genetic studies of the lac repressor. V. Repressors which bind operator more tightly generated by suppression and reversion of nonsense mutations. J Mol Biol. 1978 Aug 15;123(3):431–454. doi: 10.1016/0022-2836(78)90089-x. [DOI] [PubMed] [Google Scholar]
  16. Smith D. H., Berget P. B., King J. Temperature-sensitive mutants blocked in the folding or subunit assembly of the bacteriophage P22 tail-spike protein. I. Fine-structure mapping. Genetics. 1980 Oct;96(2):331–352. doi: 10.1093/genetics/96.2.331. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sommer H., Schmitz A., Schmeissner U., Miller J. H. Genetic studies of the lac repressor. VI. The B116 repressor: an altered lac repressor containing amino acid specified by both the trp and lacI leader regions. J Mol Biol. 1978 Aug 15;123(3):457–469. [PubMed] [Google Scholar]
  18. Walker G. C. Inducible reactivation and mutagenesis of UV-irradiated bacteriophage P22 in Salmonella typhimurium LT2 containing the plasmid pKM101. J Bacteriol. 1978 Aug;135(2):415–421. doi: 10.1128/jb.135.2.415-421.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Winston F., Botstein D., Miller J. H. Characterization of amber and ochre suppressors in Salmonella typhimurium. J Bacteriol. 1979 Jan;137(1):433–439. doi: 10.1128/jb.137.1.433-439.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Yu M. H., King J. Single amino acid substitutions influencing the folding pathway of the phage P22 tail spike endorhamnosidase. Proc Natl Acad Sci U S A. 1984 Nov;81(21):6584–6588. doi: 10.1073/pnas.81.21.6584. [DOI] [PMC free article] [PubMed] [Google Scholar]

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