Skip to main content
Genetics logoLink to Genetics
. 1991 May;128(1):59–67. doi: 10.1093/genetics/128.1.59

A Tester System for Detecting Each of the Six Base-Pair Substitutions in Saccharomyces Cerevisiae by Selecting for an Essential Cysteine in Iso-1-Cytochrome C

M Hampsey 1
PMCID: PMC1204453  PMID: 1648005

Abstract

A collection of isogenic yeast strains that is specifically diagnostic for the six possible base-pair substitutions is described. Each strain contains a single, unique base-pair substitution at the Cys-22 codon of the CYC1 gene, which codes for iso-1-cytochrome c. These mutations encode replacements of the functionally critical Cys-22 and render each strain unable to grow on media containing nonfermentable carbon sources (Cyc(-)). Specific base-pair substitutions, which restore the Cys-22 codon, can be monitored simply by scoring for reversion to the Cyc(+) phenotype. These strains revert spontaneously at very low frequencies and exhibit specific patterns of reversion in response to different mutagens. Only true (CYC1(+)) revertants were recovered after 7 days on selection medium. The following mutagen specificities were observed: ethyl methanesulfonate and N-methyl-N'-nitro-N-nitrosoguanidine, G.C -> A.T; 4-nitroquinoline-1-oxide, G.C -> T.A and G.C -> A.T; diepoxybutane, A.T -> T.A, A.T -> G.C and G.C -> T.A; 5-azacytidine, G.C -> C.G. Methyl methanesulfonate induced all six mutations, albeit at relatively low frequencies, with preference for A.T -> T.A and A.T -> G.C. Ultraviolet light was the most inefficient mutagen used in this study, consistent with its preference for transition mutations at dipyrimidine sequences reported in other systems. This tester system is valuable as a simple and reliable assay for specific mutations without DNA sequence analysis.

Full Text

The Full Text of this article is available as a PDF (943.8 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Ames B. N., Lee F. D., Durston W. E. An improved bacterial test system for the detection and classification of mutagens and carcinogens. Proc Natl Acad Sci U S A. 1973 Mar;70(3):782–786. doi: 10.1073/pnas.70.3.782. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Ashman C. R., Davidson R. L. Sequence analysis of spontaneous mutations in a shuttle vector gene integrated into mammalian chromosomal DNA. Proc Natl Acad Sci U S A. 1987 May;84(10):3354–3358. doi: 10.1073/pnas.84.10.3354. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Baim S. B., Sherman F. mRNA structures influencing translation in the yeast Saccharomyces cerevisiae. Mol Cell Biol. 1988 Apr;8(4):1591–1601. doi: 10.1128/mcb.8.4.1591. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Boeke J. D., Trueheart J., Natsoulis G., Fink G. R. 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 1987;154:164–175. doi: 10.1016/0076-6879(87)54076-9. [DOI] [PubMed] [Google Scholar]
  5. Burns P. A., Allen F. L., Glickman B. W. DNA sequence analysis of mutagenicity and site specificity of ethyl methanesulfonate in Uvr+ and UvrB- strains of Escherichia coli. Genetics. 1986 Aug;113(4):811–819. doi: 10.1093/genetics/113.4.811. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Burns P. A., Gordon A. J., Glickman B. W. Influence of neighbouring base sequence on N-methyl-N'-nitro-N-nitrosoguanidine mutagenesis in the lacI gene of Escherichia coli. J Mol Biol. 1987 Apr 5;194(3):385–390. doi: 10.1016/0022-2836(87)90668-1. [DOI] [PubMed] [Google Scholar]
  7. Cabrera M., Nghiem Y., Miller J. H. mutM, a second mutator locus in Escherichia coli that generates G.C----T.A transversions. J Bacteriol. 1988 Nov;170(11):5405–5407. doi: 10.1128/jb.170.11.5405-5407.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Coulondre C., Miller J. H. Genetic studies of the lac repressor. IV. Mutagenic specificity in the lacI gene of Escherichia coli. J Mol Biol. 1977 Dec 15;117(3):577–606. doi: 10.1016/0022-2836(77)90059-6. [DOI] [PubMed] [Google Scholar]
  9. Cupples C. G., Cabrera M., Cruz C., Miller J. H. A set of lacZ mutations in Escherichia coli that allow rapid detection of specific frameshift mutations. Genetics. 1990 Jun;125(2):275–280. doi: 10.1093/genetics/125.2.275. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Cupples C. G., Miller J. H. A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions. Proc Natl Acad Sci U S A. 1989 Jul;86(14):5345–5349. doi: 10.1073/pnas.86.14.5345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Ernst J. F., Stewart J. W., Sherman F. The cyc1-11 mutation in yeast reverts by recombination with a nonallelic gene: composite genes determining the iso-cytochromes c. Proc Natl Acad Sci U S A. 1981 Oct;78(10):6334–6338. doi: 10.1073/pnas.78.10.6334. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Farabaugh P. J., Schmeissner U., Hofer M., Miller J. H. Genetic studies of the lac repressor. VII. On the molecular nature of spontaneous hotspots in the lacI gene of Escherichia coli. J Mol Biol. 1978 Dec 25;126(4):847–857. doi: 10.1016/0022-2836(78)90023-2. [DOI] [PubMed] [Google Scholar]
  13. Fink G. R., Lowenstein R. Simplified method for testing mutagens in Saccharomyces. J Bacteriol. 1969 Nov;100(2):1126–1127. doi: 10.1128/jb.100.2.1126-1127.1969. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Giroux C. N., Mis J. R., Pierce M. K., Kohalmi S. E., Kunz B. A. DNA sequence analysis of spontaneous mutations in the SUP4-o gene of Saccharomyces cerevisiae. Mol Cell Biol. 1988 Feb;8(2):978–981. doi: 10.1128/mcb.8.2.978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Greenspan J. A., Xu F. M., Davidson R. L. Molecular analysis of ethyl methanesulfonate-induced reversion of a chromosomally integrated mutant shuttle vector gene in mammalian cells. Mol Cell Biol. 1988 Oct;8(10):4185–4189. doi: 10.1128/mcb.8.10.4185. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Hampsey D. M., Das G., Sherman F. Amino acid replacements in yeast iso-1-cytochrome c. Comparison with the phylogenetic series and the tertiary structure of related cytochromes c. J Biol Chem. 1986 Mar 5;261(7):3259–3271. [PubMed] [Google Scholar]
  17. Hampsey D. M., Das G., Sherman F. Yeast iso-1-cytochrome c: genetic analysis of structural requirements. FEBS Lett. 1988 Apr 25;231(2):275–283. doi: 10.1016/0014-5793(88)80834-2. [DOI] [PubMed] [Google Scholar]
  18. Hauser J., Seidman M. M., Sidur K., Dixon K. Sequence specificity of point mutations induced during passage of a UV-irradiated shuttle vector plasmid in monkey cells. Mol Cell Biol. 1986 Jan;6(1):277–285. doi: 10.1128/mcb.6.1.277. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Hsia H. C., Lebkowski J. S., Leong P. M., Calos M. P., Miller J. H. Comparison of ultraviolet irradiation-induced mutagenesis of the lacI gene in Escherichia coli and in human 293 cells. J Mol Biol. 1989 Jan 5;205(1):103–113. doi: 10.1016/0022-2836(89)90368-9. [DOI] [PubMed] [Google Scholar]
  20. Kohalmi S. E., Kunz B. A. Role of neighbouring bases and assessment of strand specificity in ethylmethanesulphonate and N-methyl-N'-nitro-N-nitrosoguanidine mutagenesis in the SUP4-o gene of Saccharomyces cerevisiae. J Mol Biol. 1988 Dec 5;204(3):561–568. doi: 10.1016/0022-2836(88)90355-5. [DOI] [PubMed] [Google Scholar]
  21. Kunkel T. A., Roberts J. D., Zakour R. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 1987;154:367–382. doi: 10.1016/0076-6879(87)54085-x. [DOI] [PubMed] [Google Scholar]
  22. Kunz B. A., Kang X. L., Kohalmi L. The yeast rad18 mutator specifically increases G.C----T.A transversions without reducing correction of G-A or C-T mismatches to G.C pairs. Mol Cell Biol. 1991 Jan;11(1):218–225. doi: 10.1128/mcb.11.1.218. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Kunz B. A., Pierce M. K., Mis J. R., Giroux C. N. DNA sequence analysis of the mutational specificity of u.v. light in the SUP4-o gene of yeast. Mutagenesis. 1987 Nov;2(6):445–453. doi: 10.1093/mutage/2.6.445. [DOI] [PubMed] [Google Scholar]
  24. LeClerc J. E., Istock N. L. Specificity of UV mutagenesis in the lac promoter of M13lac hybrid phage DNA. Nature. 1982 Jun 17;297(5867):596–598. doi: 10.1038/297596a0. [DOI] [PubMed] [Google Scholar]
  25. Lecka-Czernik B., Swietlińska Z., Zaborowska D., Zuk J. Analysis of replication of DEB-alkylated DNA in yeast: bypass replication in a rad3 mutant of Saccharomyces cerevisiae. Mutat Res. 1984 Nov-Dec;132(5-6):161–169. doi: 10.1016/0167-8817(84)90034-8. [DOI] [PubMed] [Google Scholar]
  26. Lee G. S., Savage E. A., Ritzel R. G., von Borstel R. C. The base-alteration spectrum of spontaneous and ultraviolet radiation-induced forward mutations in the URA3 locus of Saccharomyces cerevisiae. Mol Gen Genet. 1988 Nov;214(3):396–404. doi: 10.1007/BF00330472. [DOI] [PubMed] [Google Scholar]
  27. Levin D. E., Ames B. N. Classifying mutagens as to their specificity in causing the six possible transitions and transversions: a simple analysis using the Salmonella mutagenicity assay. Environ Mutagen. 1986;8(1):9–28. doi: 10.1002/em.2860080103. [DOI] [PubMed] [Google Scholar]
  28. Louie G. V., Brayer G. D. High-resolution refinement of yeast iso-1-cytochrome c and comparisons with other eukaryotic cytochromes c. J Mol Biol. 1990 Jul 20;214(2):527–555. doi: 10.1016/0022-2836(90)90197-T. [DOI] [PubMed] [Google Scholar]
  29. Louie G. V., Hutcheon W. L., Brayer G. D. Yeast iso-1-cytochrome c. A 2.8 A resolution three-dimensional structure determination. J Mol Biol. 1988 Jan 20;199(2):295–314. doi: 10.1016/0022-2836(88)90315-4. [DOI] [PubMed] [Google Scholar]
  30. McCann J., Choi E., Yamasaki E., Ames B. N. Detection of carcinogens as mutagens in the Salmonella/microsome test: assay of 300 chemicals. Proc Natl Acad Sci U S A. 1975 Dec;72(12):5135–5139. doi: 10.1073/pnas.72.12.5135. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. McKnight G. L., Cardillo T. S., Sherman F. An extensive deletion causing overproduction of yeast iso-2-cytochrome c. Cell. 1981 Aug;25(2):409–419. doi: 10.1016/0092-8674(81)90059-3. [DOI] [PubMed] [Google Scholar]
  32. Miller J. H. Mutagenic specificity of ultraviolet light. J Mol Biol. 1985 Mar 5;182(1):45–65. doi: 10.1016/0022-2836(85)90026-9. [DOI] [PubMed] [Google Scholar]
  33. Miller J. K., Barnes W. M. Colony probing as an alternative to standard sequencing as a means of direct analysis of chromosomal DNA to determine the spectrum of single-base changes in regions of known sequence. Proc Natl Acad Sci U S A. 1986 Feb;83(4):1026–1030. doi: 10.1073/pnas.83.4.1026. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Nghiem Y., Cabrera M., Cupples C. G., Miller J. H. The mutY gene: a mutator locus in Escherichia coli that generates G.C----T.A transversions. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2709–2713. doi: 10.1073/pnas.85.8.2709. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Olszewska E., Kilbey B. J. The mutagenic activity of diepoxybutane in yeast. Mutat Res. 1975 Dec;33(2-3):383–390. doi: 10.1016/0027-5107(75)90214-6. [DOI] [PubMed] [Google Scholar]
  36. Prakash L., Sherman F. Differentiation between amber and ochre mutants of yeast by reversion with 4-nitroquinoline-1-oxide. Genetics. 1974 Jun;77(2):245–254. doi: 10.1093/genetics/77.2.245. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Prakash L., Sherman F. Mutagenic specificity: reversion of iso-1-cytochrome c mutants of yeast. J Mol Biol. 1973 Sep 5;79(1):65–82. doi: 10.1016/0022-2836(73)90270-2. [DOI] [PubMed] [Google Scholar]
  38. Schaaper R. M., Dunn R. L., Glickman B. W. Mechanisms of ultraviolet-induced mutation. Mutational spectra in the Escherichia coli lacI gene for a wild-type and an excision-repair-deficient strain. J Mol Biol. 1987 Nov 20;198(2):187–202. doi: 10.1016/0022-2836(87)90305-6. [DOI] [PubMed] [Google Scholar]
  39. Schaaper R. M., Dunn R. L. Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: the nature of in vivo DNA replication errors. Proc Natl Acad Sci U S A. 1987 Sep;84(17):6220–6224. doi: 10.1073/pnas.84.17.6220. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Sherman F., Stewart J. W., Jackson M., Gilmore R. A., Parker J. H. Mutants of yeast defective in iso-1-cytochrome c. Genetics. 1974 Jun;77(2):255–284. doi: 10.1093/genetics/77.2.255. [DOI] [PMC free article] [PubMed] [Google Scholar]
  41. Singh A., Sherman F. Deletions of the iso-1-cytochrome c and adjacent genes of yeast: discovery of the OSM1 gene controlling osmotic sensitivity. Genetics. 1978 Aug;89(4):653–665. doi: 10.1093/genetics/89.4.653. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Stiles J. I., Friedman L. R., Helms C., Consaul S., Sherman F. Transposition of the gene cluster CYC1-OSM1-RAD7 in yeast. J Mol Biol. 1981 Jun 5;148(4):331–346. doi: 10.1016/0022-2836(81)90179-0. [DOI] [PubMed] [Google Scholar]
  43. Struhl K., Stinchcomb D. T., Scherer S., Davis R. W. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc Natl Acad Sci U S A. 1979 Mar;76(3):1035–1039. doi: 10.1073/pnas.76.3.1035. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Yanofsky C., Ito J., Horn V. Amino acid replacements and the genetic code. Cold Spring Harb Symp Quant Biol. 1966;31:151–162. doi: 10.1101/sqb.1966.031.01.023. [DOI] [PubMed] [Google Scholar]
  45. Zaborowska D., Zuk J., Swietlińska Z. Abnormalities in cell division induced by diepoxybutane in rad1-1 and rad3 mutants of Saccharomyces cerevisiae. J Gen Microbiol. 1982 Sep;128(9):2133–2140. doi: 10.1099/00221287-128-9-2133. [DOI] [PubMed] [Google Scholar]
  46. Zimmermann F. K., Scheel I. Genetic effects of 5-azacytidine in Saccharomyces cerevisiae. Mutat Res. 1984 Jan;139(1):21–24. doi: 10.1016/0165-7992(84)90116-7. [DOI] [PubMed] [Google Scholar]
  47. Zuk J., Swietlińska Z., Zaborowska D., Haładus E., Jachymczyk W. Relation between liquid-holding recovery, DNA repair, and mitotic recombination in the rad3 mutant of Saccharomyces cerevisiae after treatment with diepoxybutane (DEB). Mol Gen Genet. 1980;180(3):597–603. doi: 10.1007/BF00268066. [DOI] [PubMed] [Google Scholar]

Articles from Genetics are provided here courtesy of Oxford University Press

RESOURCES