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. 1994 Mar;136(3):1063–1073. doi: 10.1093/genetics/136.3.1063

Molecular and Cytogenetical Characterization of the 10a1-2 Band and Adjoining Region in the Drosophila Melanogaster Polytene X Chromosome

T Y Kozlova 1, V F Semeshin 1, I V Tretyakova 1, E B Kokoza 1, V Pirrotta 1, V E Grafodatskaya 1, E S Belyaeva 1, I F Zhimulev 1
PMCID: PMC1205863  PMID: 8005415

Abstract

Some 300 kb of DNA from the 9F12-10A7 X chromosome region (seven bands) uncovered by Df(1)v(L3) were cloned and 31 break points of chromosome rearrangements within the region were mapped. Positions of 12 genes found earlier in genetic saturation experiments, transcripts and P element-induced mutations were located on the physical map using either chromosome rearrangements or Southern blot hybridizations. Data on the position of the break points, genes and polytene chromosome bands allow the following conclusions to be made. (1) The size of the bands in the region varies between 4 kb (10A6 and 7) and 183-195 kb (10A1-2). The compaction ratio of DNA in bands varies from 8-36 (10A6 + 7) to 151-161 (10A1-2). Therefore, fine and thick bands appear to have different kinds of DNP packaging. (2) The bands differ in genetic content. Fine bands contain from one to three genes. In contrast, the 10A1-2 band contains three genes and at least six transcribed DNA fragments. (3) Comparison of genetic and physical maps shows that in this region 0.01 centiMorgan corresponds to 3.3 kb of DNA.

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Selected References

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  1. Banerjee U., Renfranz P. J., Pollock J. A., Benzer S. Molecular characterization and expression of sevenless, a gene involved in neuronal pattern formation in the Drosophila eye. Cell. 1987 Apr 24;49(2):281–291. doi: 10.1016/0092-8674(87)90569-1. [DOI] [PubMed] [Google Scholar]
  2. Beermann W. Chromomeres and genes. Results Probl Cell Differ. 1972;4:1–33. doi: 10.1007/978-3-540-37164-9_1. [DOI] [PubMed] [Google Scholar]
  3. Bowtell D. D., Simon M. A., Rubin G. M. Nucleotide sequence and structure of the sevenless gene of Drosophila melanogaster. Genes Dev. 1988 Jun;2(6):620–634. doi: 10.1101/gad.2.6.620. [DOI] [PubMed] [Google Scholar]
  4. Derksen J., Wieslander L., van der Ploeg M., Daneholt B. Identification of the Balbiani ring 2 chromomere and determination of the content and compaction of its DNA. Chromosoma. 1980;81(1):65–84. doi: 10.1007/BF00292423. [DOI] [PubMed] [Google Scholar]
  5. Gausz J., Hall L. M., Spierer A., Spierer P. Molecular Genetics of the ROSY-ACE Region of DROSOPHILA MELANOGASTER. Genetics. 1986 Jan;112(1):65–78. doi: 10.1093/genetics/112.1.65. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Gilbert D., Hirsh J., Wright T. R. Molecular mapping of a gene cluster flanking the Drosophila Dopa decarboxylase gene. Genetics. 1984 Apr;106(4):679–694. doi: 10.1093/genetics/106.4.679. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Hafen E., Basler K., Edstroem J. E., Rubin G. M. Sevenless, a cell-specific homeotic gene of Drosophila, encodes a putative transmembrane receptor with a tyrosine kinase domain. Science. 1987 Apr 3;236(4797):55–63. doi: 10.1126/science.2882603. [DOI] [PubMed] [Google Scholar]
  8. Judd B. H., Shen M. W., Kaufman T. C. The anatomy and function of a segment of the X chromosome of Drosophila melanogaster. Genetics. 1972 May;71(1):139–156. doi: 10.1093/genetics/71.1.139. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Kokoza E. B., Kozlova T. Iu, Umbetova G. Kh, Dubrovskii E. B., Pirrotta V., Zhimulev I. F. Molekuliaeno-tsitogeneticheskii analiz diska 10A1-2 X-khromosomy Drosophila melanogaster. Genetika. 1990 Aug;26(8):1361–1369. [PubMed] [Google Scholar]
  10. Lefevre G., Jr The eccentricity of vermilion deficiencies in Drosophila melanogaster. Genetics. 1969 Nov;63(3):589–600. doi: 10.1093/genetics/63.3.589. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Lefevre G., Jr The relationship between genes and polytene chromosome bands. Annu Rev Genet. 1974;8:51–62. doi: 10.1146/annurev.ge.08.120174.000411. [DOI] [PubMed] [Google Scholar]
  12. Lefevre G., Watkins W. The question of the total gene number in Drosophila melanogaster. Genetics. 1986 Aug;113(4):869–895. doi: 10.1093/genetics/113.4.869. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Maniatis T., Hardison R. C., Lacy E., Lauer J., O'Connell C., Quon D., Sim G. K., Efstratiadis A. The isolation of structural genes from libraries of eucaryotic DNA. Cell. 1978 Oct;15(2):687–701. doi: 10.1016/0092-8674(78)90036-3. [DOI] [PubMed] [Google Scholar]
  14. O'Connell P. O., Rosbash M. Sequence, structure, and codon preference of the Drosophila ribosomal protein 49 gene. Nucleic Acids Res. 1984 Jul 11;12(13):5495–5513. doi: 10.1093/nar/12.13.5495. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Rudkin G. T. The relative mutabilities of DNA in regions of the X chromosome of Drosophila melanogaster. Genetics. 1965 Sep;52(3):665–681. doi: 10.1093/genetics/52.3.665. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Searles L. L., Voelker R. A. Molecular characterization of the Drosophila vermilion locus and its suppressible alleles. Proc Natl Acad Sci U S A. 1986 Jan;83(2):404–408. doi: 10.1073/pnas.83.2.404. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sorsa V., Green M. M., Beermann W. Cytogenetic fine structure and chromosomal localization of the white gene in Drosophila melanogaster. Nat New Biol. 1973 Sep 12;245(141):34–37. doi: 10.1038/newbio245034a0. [DOI] [PubMed] [Google Scholar]
  18. Wright T. R. The genetic and molecular organization of the dense cluster of functionally related, vital genes in the DOPA decarboxylase region of the Drosophila melanogaster genome. Results Probl Cell Differ. 1987;14:95–120. doi: 10.1007/978-3-540-47783-9_7. [DOI] [PubMed] [Google Scholar]
  19. Zhimulev I. F., Belyaeva E. S., Semeshin V. F. Informational content of polytene chromosome bands and puffs. CRC Crit Rev Biochem. 1981;11(4):303–340. doi: 10.1080/10409238109104420. [DOI] [PubMed] [Google Scholar]
  20. Zhimulev I. F., Pokholkova G. V., Bgatov A. V., Semeshin V. F., Umbetova G. H., Belyaeva E. S. Genetic interpretation of polytene chromosomes banding pattern. Mol Biol Rep. 1983 May;9(1-2):19–23. doi: 10.1007/BF00777469. [DOI] [PubMed] [Google Scholar]
  21. Zimmerman J. L., Fouts D. L., Manning J. E. Evidence for a complex class of nonadenylated mRNA in Drosophila. Genetics. 1980 Jul;95(3):673–691. doi: 10.1093/genetics/95.3.673. [DOI] [PMC free article] [PubMed] [Google Scholar]

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