Skip to main content
Genetics logoLink to Genetics
. 1997 Sep;147(1):125–136. doi: 10.1093/genetics/147.1.125

Occurrence of Repeat Induced Point Mutation in Long Segmental Duplications of Neurospora

D D Perkins 1, B S Margolin 1, E U Selker 1, S D Haedo 1
PMCID: PMC1208096  PMID: 9286673

Abstract

Previous studies of repeat induced point mutation (RIP) have typically involved gene-size duplications resulting from insertion of transforming DNA at ectopic chromosomal positions. To ascertain whether genes in larger duplications are subject to RIP, progeny were examined from crosses heterozygous for long segmental duplications obtained using insertional or quasiterminal translocations. Of 17 distinct mutations from crossing 11 different duplications, 13 mapped within the segment that was duplicated in the parent, one was closely linked, and three were unlinked. Half of the mutations in duplicated segments were at previously unknown loci. The mutations were recessive and were expressed both in haploid and in duplication progeny from Duplication X Normal, suggesting that both copies of the wild-type gene had undergone RIP. Seven transition mutations characteristic of RIP were found in 395 base pairs (bp) examined in one ro-11 allele from these crosses and three were found in ~750 bp of another. A single chain-terminating C to T mutation was found in 800 bp of arg-6. RIP is thus responsible. These results are consistent with the idea that the impaired fertility that is characteristic of segmental duplications is due to inactivation by RIP of genes needed for progression through the sexual cycle.

Full Text

The Full Text of this article is available as a PDF (3.0 MB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Arnaise S., Leblon G., Lares L. A system for the detection of chromosomal rearrangements using Sordaria macrospora. Mutat Res. 1984 Jan;125(1):33–42. doi: 10.1016/0027-5107(84)90029-0. [DOI] [PubMed] [Google Scholar]
  2. Arst H. N., Jr A near terminal pericentric inversion leads to nitrogen metabolite derepression in Aspergillus nidulans. Mol Gen Genet. 1982;188(3):490–493. doi: 10.1007/BF00330054. [DOI] [PubMed] [Google Scholar]
  3. Bell-Pedersen D., Dunlap J. C., Loros J. J. The Neurospora circadian clock-controlled gene, ccg-2, is allelic to eas and encodes a fungal hydrophobin required for formation of the conidial rodlet layer. Genes Dev. 1992 Dec;6(12A):2382–2394. doi: 10.1101/gad.6.12a.2382. [DOI] [PubMed] [Google Scholar]
  4. Bond D. J. The Genetics of a Probable Insertional Translocation in SORDARIA BREVICOLLIS. Genetics. 1979 May;92(1):75–82. doi: 10.1093/genetics/92.1.75. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Bowman B. J., Dschida W. J., Bowman E. J. Vacuolar ATPase of Neurospora crassa: electron microscopy, gene characterization and gene inactivation/mutation. J Exp Biol. 1992 Nov;172:57–66. doi: 10.1242/jeb.172.1.57. [DOI] [PubMed] [Google Scholar]
  6. Bowring F. J., Catcheside D. E. The effect of rec-2 on repeat-induced point-mutation (RIP) and recombination events that excise DNA sequence duplications at the his-3 locus in Neurospora crassa. Curr Genet. 1993 May-Jun;23(5-6):496–500. doi: 10.1007/BF00312641. [DOI] [PubMed] [Google Scholar]
  7. Butler D. K., Metzenberg R. L. Premeiotic change of nucleolus organizer size in Neurospora. Genetics. 1989 Aug;122(4):783–791. doi: 10.1093/genetics/122.4.783. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Chary P., Dillon D., Schroeder A. L., Natvig D. O. Superoxide dismutase (sod-1) null mutants of Neurospora crassa: oxidative stress sensitivity, spontaneous mutation rate and response to mutagens. Genetics. 1994 Jul;137(3):723–730. doi: 10.1093/genetics/137.3.723. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Fincham J. R., Connerton I. F., Notarianni E., Harrington K. Premeiotic disruption of duplicated and triplicated copies of the Neurospora crassa am (glutamate dehydrogenase) gene. Curr Genet. 1989 May;15(5):327–334. doi: 10.1007/BF00419912. [DOI] [PubMed] [Google Scholar]
  10. Fincham J. R. Generation of new functional mutant alleles by premeiotic disruption of the Neurospora crassa am gene. Curr Genet. 1990 Dec;18(5):441–445. doi: 10.1007/BF00309914. [DOI] [PubMed] [Google Scholar]
  11. Foss E. J., Garrett P. W., Kinsey J. A., Selker E. U. Specificity of repeat-induced point mutation (RIP) in Neurospora: sensitivity of non-Neurospora sequences, a natural diverged tandem duplication, and unique DNA adjacent to a duplicated region. Genetics. 1991 Apr;127(4):711–717. doi: 10.1093/genetics/127.4.711. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Geiser D. M., Arnold M. L., Timberlake W. E. Wild chromosomal variants in Aspergillus nidulans. Curr Genet. 1996 Feb;29(3):293–300. doi: 10.1007/BF02221561. [DOI] [PubMed] [Google Scholar]
  13. Gessert S. F., Kim J. H., Nargang F. E., Weiss R. L. A polyprotein precursor of two mitochondrial enzymes in Neurospora crassa. Gene structure and precursor processing. J Biol Chem. 1994 Mar 18;269(11):8189–8203. [PubMed] [Google Scholar]
  14. Glass N. L., Lee L. Isolation of Neurospora crassa A mating type mutants by repeat induced point (RIP) mutation. Genetics. 1992 Sep;132(1):125–133. doi: 10.1093/genetics/132.1.125. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Harkness T. A., Metzenberg R. L., Schneider H., Lill R., Neupert W., Nargang F. E. Inactivation of the Neurospora crassa gene encoding the mitochondrial protein import receptor MOM19 by the technique of "sheltered RIP". Genetics. 1994 Jan;136(1):107–118. doi: 10.1093/genetics/136.1.107. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Irelan J. T., Hagemann A. T., Selker E. U. High frequency repeat-induced point mutation (RIP) is not associated with efficient recombination in Neurospora. Genetics. 1994 Dec;138(4):1093–1103. doi: 10.1093/genetics/138.4.1093. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Le Chevanton L., Leblon G., Lebilcot S. Duplications created by transformation in Sordaria macrospora are not inactivated during meiosis. Mol Gen Genet. 1989 Sep;218(3):390–396. doi: 10.1007/BF00332400. [DOI] [PubMed] [Google Scholar]
  18. Nelson M. A., Metzenberg R. L. Sexual development genes of Neurospora crassa. Genetics. 1992 Sep;132(1):149–162. doi: 10.1093/genetics/132.1.149. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Nelson M., Raschke E., McClelland M. Effect of site-specific methylation on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res. 1993 Jul 1;21(13):3139–3154. doi: 10.1093/nar/21.13.3139. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Oakley C. E., Weil C. F., Kretz P. L., Oakley B. R. Cloning of the riboB locus of Aspergillus nidulans. Gene. 1987;53(2-3):293–298. doi: 10.1016/0378-1119(87)90019-9. [DOI] [PubMed] [Google Scholar]
  21. Perkins D D. New Markers and Multiple Point Linkage Data in Neurospora. Genetics. 1959 Nov;44(6):1185–1208. doi: 10.1093/genetics/44.6.1185. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Perkins D. D., Barry E. G. The cytogenetics of Neurospora. Adv Genet. 1977;19:133–285. doi: 10.1016/s0065-2660(08)60246-1. [DOI] [PubMed] [Google Scholar]
  23. Perkins D. D. Chromosome rearrangements in Neurospora and other filamentous fungi. Adv Genet. 1997;36:239–398. doi: 10.1016/s0065-2660(08)60311-9. [DOI] [PubMed] [Google Scholar]
  24. Perkins D. D., Radford A., Newmeyer D., Björkman M. Chromosomal loci of Neurospora crassa. Microbiol Rev. 1982 Dec;46(4):426–570. doi: 10.1128/mr.46.4.426-570.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Rossignol J. L., Faugeron G. Gene inactivation triggered by recognition between DNA repeats. Experientia. 1994 Mar 15;50(3):307–317. doi: 10.1007/BF01924014. [DOI] [PubMed] [Google Scholar]
  26. Selker E. U., Cambareri E. B., Jensen B. C., Haack K. R. Rearrangement of duplicated DNA in specialized cells of Neurospora. Cell. 1987 Dec 4;51(5):741–752. doi: 10.1016/0092-8674(87)90097-3. [DOI] [PubMed] [Google Scholar]
  27. Selker E. U., Garrett P. W. DNA sequence duplications trigger gene inactivation in Neurospora crassa. Proc Natl Acad Sci U S A. 1988 Sep;85(18):6870–6874. doi: 10.1073/pnas.85.18.6870. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Selker E. U. Premeiotic instability of repeated sequences in Neurospora crassa. Annu Rev Genet. 1990;24:579–613. doi: 10.1146/annurev.ge.24.120190.003051. [DOI] [PubMed] [Google Scholar]
  29. Singer M. J., Marcotte B. A., Selker E. U. DNA methylation associated with repeat-induced point mutation in Neurospora crassa. Mol Cell Biol. 1995 Oct;15(10):5586–5597. doi: 10.1128/mcb.15.10.5586. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Yarden O., Yanofsky C. Chitin synthase 1 plays a major role in cell wall biogenesis in Neurospora crassa. Genes Dev. 1991 Dec;5(12B):2420–2430. doi: 10.1101/gad.5.12b.2420. [DOI] [PubMed] [Google Scholar]

Articles from Genetics are provided here courtesy of Oxford University Press

RESOURCES