Abstract
Synaptobrevin 2 (Sb2), syntaxin1 (Stx1), and synaptosomal-associated protein of 25 kDa (SNAP-25) are the main components of the soluble N -ethylmaleimide-sensitive fusion protein attachment protein receptor (SNARE) complex involved in fusion of synaptic vesicles with the presynaptic plasma membrane. We report the characterization of D53, a novel SNARE-binding protein preferentially expressed in neural and neuro-endocrine cells. Its two-dimensional organization, established by the hydrophobic cluster analysis, is reminiscent of SNARE proteins. D53 contains two putative helical regions, one of which includes a large coiled-coil domain involved in the interaction with Sb2 in vitro. Following subcellular fractionation, endogenous D53 was specifically detected in the membrane-containing fraction of PC12 cells, where it co-immunoprecipitated with Sb2. Analysis by confocal microscopy showed that, in these cells, endogenous D53 co-localized partially with the transferrin receptor in early endosomes. In vitro assays revealed that binding properties of D53 to Stx1 and Sb2 are comparable with those of SNAP-25. Furthermore, D53 forms Sb2/Stx1/D53 complexes in vitro in a manner similar to SNAP-25. We propose that D53 could be involved in the assembly or disassembly of endosomal SNARE complexes by regulating Sb2/Stx interaction.
Full Text
The Full Text of this article is available as a PDF (489.7 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997 Sep 1;25(17):3389–3402. doi: 10.1093/nar/25.17.3389. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Antonin W., Holroyd C., Fasshauer D., Pabst S., Von Mollard G. F., Jahn R. A SNARE complex mediating fusion of late endosomes defines conserved properties of SNARE structure and function. EMBO J. 2000 Dec 1;19(23):6453–6464. doi: 10.1093/emboj/19.23.6453. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Barnier J. V., Papin C., Eychène A., Lecoq O., Calothy G. The mouse B-raf gene encodes multiple protein isoforms with tissue-specific expression. J Biol Chem. 1995 Oct 6;270(40):23381–23389. doi: 10.1074/jbc.270.40.23381. [DOI] [PubMed] [Google Scholar]
- Bennett M. K., Scheller R. H. The molecular machinery for secretion is conserved from yeast to neurons. Proc Natl Acad Sci U S A. 1993 Apr 1;90(7):2559–2563. doi: 10.1073/pnas.90.7.2559. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Berger B., Wilson D. B., Wolf E., Tonchev T., Milla M., Kim P. S. Predicting coiled coils by use of pairwise residue correlations. Proc Natl Acad Sci U S A. 1995 Aug 29;92(18):8259–8263. doi: 10.1073/pnas.92.18.8259. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Byrne J. A., Mattei M. G., Basset P. Definition of the tumor protein D52 (TPD52) gene family through cloning of D52 homologues in human (hD53) and mouse (mD52). Genomics. 1996 Aug 1;35(3):523–532. doi: 10.1006/geno.1996.0393. [DOI] [PubMed] [Google Scholar]
- Byrne J. A., Nourse C. R., Basset P., Gunning P. Identification of homo- and heteromeric interactions between members of the breast carcinoma-associated D52 protein family using the yeast two-hybrid system. Oncogene. 1998 Feb 19;16(7):873–881. doi: 10.1038/sj.onc.1201604. [DOI] [PubMed] [Google Scholar]
- Byrne J. A., Tomasetto C., Garnier J. M., Rouyer N., Mattei M. G., Bellocq J. P., Rio M. C., Basset P. A screening method to identify genes commonly overexpressed in carcinomas and the identification of a novel complementary DNA sequence. Cancer Res. 1995 Jul 1;55(13):2896–2903. [PubMed] [Google Scholar]
- Calakos N., Bennett M. K., Peterson K. E., Scheller R. H. Protein-protein interactions contributing to the specificity of intracellular vesicular trafficking. Science. 1994 Feb 25;263(5150):1146–1149. doi: 10.1126/science.8108733. [DOI] [PubMed] [Google Scholar]
- Chen S. L., Maroulakou I. G., Green J. E., Romano-Spica V., Modi W., Lautenberger J., Bhat N. K. Isolation and characterization of a novel gene expressed in multiple cancers. Oncogene. 1996 Feb 15;12(4):741–751. [PubMed] [Google Scholar]
- Chen Y. A., Scales S. J., Jagath J. R., Scheller R. H. A discontinuous SNAP-25 C-terminal coil supports exocytosis. J Biol Chem. 2001 May 23;276(30):28503–28508. doi: 10.1074/jbc.M103009200. [DOI] [PubMed] [Google Scholar]
- Chen Y. A., Scheller R. H. SNARE-mediated membrane fusion. Nat Rev Mol Cell Biol. 2001 Feb;2(2):98–106. doi: 10.1038/35052017. [DOI] [PubMed] [Google Scholar]
- Cuff J. A., Clamp M. E., Siddiqui A. S., Finlay M., Barton G. J. JPred: a consensus secondary structure prediction server. Bioinformatics. 1998;14(10):892–893. doi: 10.1093/bioinformatics/14.10.892. [DOI] [PubMed] [Google Scholar]
- Fasshauer D., Sutton R. B., Brunger A. T., Jahn R. Conserved structural features of the synaptic fusion complex: SNARE proteins reclassified as Q- and R-SNAREs. Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15781–15786. doi: 10.1073/pnas.95.26.15781. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Frangioni J. V., Neel B. G. Solubilization and purification of enzymatically active glutathione S-transferase (pGEX) fusion proteins. Anal Biochem. 1993 Apr;210(1):179–187. doi: 10.1006/abio.1993.1170. [DOI] [PubMed] [Google Scholar]
- Fukuda R., McNew J. A., Weber T., Parlati F., Engel T., Nickel W., Rothman J. E., Söllner T. H. Functional architecture of an intracellular membrane t-SNARE. Nature. 2000 Sep 14;407(6801):198–202. doi: 10.1038/35025084. [DOI] [PubMed] [Google Scholar]
- Gaboriaud C., Bissery V., Benchetrit T., Mornon J. P. Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences. FEBS Lett. 1987 Nov 16;224(1):149–155. doi: 10.1016/0014-5793(87)80439-8. [DOI] [PubMed] [Google Scholar]
- Galli T., Zahraoui A., Vaidyanathan V. V., Raposo G., Tian J. M., Karin M., Niemann H., Louvard D. A novel tetanus neurotoxin-insensitive vesicle-associated membrane protein in SNARE complexes of the apical plasma membrane of epithelial cells. Mol Biol Cell. 1998 Jun;9(6):1437–1448. doi: 10.1091/mbc.9.6.1437. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Girault J. A., Labesse G., Mornon J. P., Callebaut I. The N-termini of FAK and JAKs contain divergent band 4.1 domains. Trends Biochem Sci. 1999 Feb;24(2):54–57. doi: 10.1016/s0968-0004(98)01331-0. [DOI] [PubMed] [Google Scholar]
- Greene L. A., Aletta J. M., Rukenstein A., Green S. H. PC12 pheochromocytoma cells: culture, nerve growth factor treatment, and experimental exploitation. Methods Enzymol. 1987;147:207–216. doi: 10.1016/0076-6879(87)47111-5. [DOI] [PubMed] [Google Scholar]
- Grote E., Kelly R. B. Endocytosis of VAMP is facilitated by a synaptic vesicle targeting signal. J Cell Biol. 1996 Feb;132(4):537–547. doi: 10.1083/jcb.132.4.537. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Harbury P. B., Zhang T., Kim P. S., Alber T. A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science. 1993 Nov 26;262(5138):1401–1407. doi: 10.1126/science.8248779. [DOI] [PubMed] [Google Scholar]
- Harding C., Heuser J., Stahl P. Receptor-mediated endocytosis of transferrin and recycling of the transferrin receptor in rat reticulocytes. J Cell Biol. 1983 Aug;97(2):329–339. doi: 10.1083/jcb.97.2.329. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hay J. C., Scheller R. H. SNAREs and NSF in targeted membrane fusion. Curr Opin Cell Biol. 1997 Aug;9(4):505–512. doi: 10.1016/s0955-0674(97)80026-9. [DOI] [PubMed] [Google Scholar]
- Hayashi T., McMahon H., Yamasaki S., Binz T., Hata Y., Südhof T. C., Niemann H. Synaptic vesicle membrane fusion complex: action of clostridial neurotoxins on assembly. EMBO J. 1994 Nov 1;13(21):5051–5061. doi: 10.1002/j.1460-2075.1994.tb06834.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hess D. T., Slater T. M., Wilson M. C., Skene J. H. The 25 kDa synaptosomal-associated protein SNAP-25 is the major methionine-rich polypeptide in rapid axonal transport and a major substrate for palmitoylation in adult CNS. J Neurosci. 1992 Dec;12(12):4634–4641. doi: 10.1523/JNEUROSCI.12-12-04634.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Humeau Y., Doussau F., Grant N. J., Poulain B. How botulinum and tetanus neurotoxins block neurotransmitter release. Biochimie. 2000 May;82(5):427–446. doi: 10.1016/s0300-9084(00)00216-9. [DOI] [PubMed] [Google Scholar]
- Jahn R., Südhof T. C. Membrane fusion and exocytosis. Annu Rev Biochem. 1999;68:863–911. doi: 10.1146/annurev.biochem.68.1.863. [DOI] [PubMed] [Google Scholar]
- Koticha D. K., Huddleston S. J., Witkin J. W., Baldini G. Role of the cysteine-rich domain of the t-SNARE component, SYNDET, in membrane binding and subcellular localization. J Biol Chem. 1999 Mar 26;274(13):9053–9060. doi: 10.1074/jbc.274.13.9053. [DOI] [PubMed] [Google Scholar]
- Low S. H., Roche P. A., Anderson H. A., van Ijzendoorn S. C., Zhang M., Mostov K. E., Weimbs T. Targeting of SNAP-23 and SNAP-25 in polarized epithelial cells. J Biol Chem. 1998 Feb 6;273(6):3422–3430. doi: 10.1074/jbc.273.6.3422. [DOI] [PubMed] [Google Scholar]
- Majó G., Ferrer I., Marsal J., Blasi J., Aguado F. Immunocytochemical analysis of the synaptic proteins SNAP-25 and Rab3A in human pituitary adenomas. Overexpression of SNAP-25 in the mammmosomatotroph lineages. J Pathol. 1997 Dec;183(4):440–446. doi: 10.1002/(SICI)1096-9896(199712)183:4<440::AID-PATH953>3.0.CO;2-#. [DOI] [PubMed] [Google Scholar]
- Niemann H., Blasi J., Jahn R. Clostridial neurotoxins: new tools for dissecting exocytosis. Trends Cell Biol. 1994 May;4(5):179–185. doi: 10.1016/0962-8924(94)90203-8. [DOI] [PubMed] [Google Scholar]
- Nourse C. R., Mattei M. G., Gunning P., Byrne J. A. Cloning of a third member of the D52 gene family indicates alternative coding sequence usage in D52-like transcripts. Biochim Biophys Acta. 1998 Nov 26;1443(1-2):155–168. doi: 10.1016/s0167-4781(98)00211-5. [DOI] [PubMed] [Google Scholar]
- Papin C., Eychène A., Brunet A., Pagès G., Pouysségur J., Calothy G., Barnier J. V. B-Raf protein isoforms interact with and phosphorylate Mek-1 on serine residues 218 and 222. Oncogene. 1995 Apr 20;10(8):1647–1651. [PubMed] [Google Scholar]
- Parente J. A., Goldenring J. R., Petropoulos A. C., Hellman U., Chew C. S. Purification, cloning, and expression of a novel, endogenous, calcium-sensitive, 28-kDa phosphoprotein. J Biol Chem. 1996 Aug 16;271(33):20096–20101. doi: 10.1074/jbc.271.33.20096. [DOI] [PubMed] [Google Scholar]
- Pevsner J., Hsu S. C., Braun J. E., Calakos N., Ting A. E., Bennett M. K., Scheller R. H. Specificity and regulation of a synaptic vesicle docking complex. Neuron. 1994 Aug;13(2):353–361. doi: 10.1016/0896-6273(94)90352-2. [DOI] [PubMed] [Google Scholar]
- Poirier M. A., Xiao W., Macosko J. C., Chan C., Shin Y. K., Bennett M. K. The synaptic SNARE complex is a parallel four-stranded helical bundle. Nat Struct Biol. 1998 Sep;5(9):765–769. doi: 10.1038/1799. [DOI] [PubMed] [Google Scholar]
- Prekeris R., Klumperman J., Chen Y. A., Scheller R. H. Syntaxin 13 mediates cycling of plasma membrane proteins via tubulovesicular recycling endosomes. J Cell Biol. 1998 Nov 16;143(4):957–971. doi: 10.1083/jcb.143.4.957. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Proux V., Provot S., Felder-Schmittbuhl M. P., Laugier D., Calothy G., Marx M. Characterization of a leucine zipper-containing protein identified by retroviral insertion in avian neuroretina cells. J Biol Chem. 1996 Nov 29;271(48):30790–30797. doi: 10.1074/jbc.271.48.30790. [DOI] [PubMed] [Google Scholar]
- Quetglas S., Leveque C., Miquelis R., Sato K., Seagar M. Ca2+-dependent regulation of synaptic SNARE complex assembly via a calmodulin- and phospholipid-binding domain of synaptobrevin. Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9695–9700. doi: 10.1073/pnas.97.17.9695. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schiavo G., Rossetto O., Montecucco C. Clostridial neurotoxins as tools to investigate the molecular events of neurotransmitter release. Semin Cell Biol. 1994 Aug;5(4):221–229. doi: 10.1006/scel.1994.1028. [DOI] [PubMed] [Google Scholar]
- Steegmaier M., Yang B., Yoo J. S., Huang B., Shen M., Yu S., Luo Y., Scheller R. H. Three novel proteins of the syntaxin/SNAP-25 family. J Biol Chem. 1998 Dec 18;273(51):34171–34179. doi: 10.1074/jbc.273.51.34171. [DOI] [PubMed] [Google Scholar]
- Su Q., Mochida S., Tian J. H., Mehta R., Sheng Z. H. SNAP-29: a general SNARE protein that inhibits SNARE disassembly and is implicated in synaptic transmission. Proc Natl Acad Sci U S A. 2001 Nov 13;98(24):14038–14043. doi: 10.1073/pnas.251532398. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sutton R. B., Fasshauer D., Jahn R., Brunger A. T. Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution. Nature. 1998 Sep 24;395(6700):347–353. doi: 10.1038/26412. [DOI] [PubMed] [Google Scholar]
- Vogel K., Roche P. A. SNAP-23 and SNAP-25 are palmitoylated in vivo. Biochem Biophys Res Commun. 1999 May 10;258(2):407–410. doi: 10.1006/bbrc.1999.0652. [DOI] [PubMed] [Google Scholar]
- Wang G., Witkin J. W., Hao G., Bankaitis V. A., Scherer P. E., Baldini G. Syndet is a novel SNAP-25 related protein expressed in many tissues. J Cell Sci. 1997 Feb;110(Pt 4):505–513. doi: 10.1242/jcs.110.4.505. [DOI] [PubMed] [Google Scholar]
- Weber T., Zemelman B. V., McNew J. A., Westermann B., Gmachl M., Parlati F., Söllner T. H., Rothman J. E. SNAREpins: minimal machinery for membrane fusion. Cell. 1998 Mar 20;92(6):759–772. doi: 10.1016/s0092-8674(00)81404-x. [DOI] [PubMed] [Google Scholar]
- Wilson R., Ainscough R., Anderson K., Baynes C., Berks M., Bonfield J., Burton J., Connell M., Copsey T., Cooper J. 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature. 1994 Mar 3;368(6466):32–38. doi: 10.1038/368032a0. [DOI] [PubMed] [Google Scholar]
- Wojcik J., Girault J. A., Labesse G., Chomilier J., Mornon J. P., Callebaut I. Sequence analysis identifies a ras-associating (RA)-like domain in the N-termini of band 4.1/JEF domains and in the Grb7/10/14 adapter family. Biochem Biophys Res Commun. 1999 May 27;259(1):113–120. doi: 10.1006/bbrc.1999.0727. [DOI] [PubMed] [Google Scholar]