Abstract
Background
Patients receiving doxorubicin (DOX) chemotherapy are susceptible to cardiac and brain tissue damage, with oxidative stress (OS) as the primary mechanism of injury. The purpose of this research is to identify effective agents to reduce the level of DOX-induced OS in the heart and brain through bioinformatics and in vitro.
Methods
Cardiac transcriptome data (GSE59672) and hippocampal transcriptome data (GSE178812) were downloaded from the Gene Expression Omnibus database. Meanwhile, OS-related genes were retrieved in the GeneCards database. The intersection of differentially expressed genes (DEGs) and OS-related genes in cardiac and brain tissues was identified to screen for differentially expressed OS-related genes (DEOGs). Subsequently, we performed Kyoto Gene and Genome Encyclopedia enrichment, Gene Ontology annotation, and protein-protein interaction network analysis. Using the Connectivity Map (Cmap) database, we predicted the potential drug to reduce the expression of DOX-induced OS in cardiac and brain injury by key genes and validated the therapeutic effect of the drug in vitro.
Results
A total of 20 DEOGs were identified. The network’s most important modules and central genes (Col1a1, Lox, Col1a2, Ogn, Myoc, Jph2, Casp1, Aldh1a2, Cfh) were screened by the MCODE plugin of Cytoscape software. Using the Cmap database, Canadine was predicted by key genes to reduce DOX-induced OS levels in cardiac and brain tissues. Canadine elevated superoxide dismutase 1 and catalase and reduced Malondialdehyde and reactive oxygen species levels in DOX-treated H9C2 and PC12 cells.
Conclusions
Our results show that Canadine ameliorates DOX-induced cardiac and brain tissue damage by inhibiting OS.
Keywords: Doxorubicin, Brain injury, Cardiac injury, Oxidative stress, Canadine
Introduction
Doxorubicin (DOX) is a drug commonly used in the treatment of breast cancer, lung cancer, and leukemia [1]. However, the substantial adverse effects of this drug outside of anti-tumor have limited its clinical use. Many studies have shown that DOX can induce systemic multi-organ toxic injuries, such as heart failure, chemo brain, gastrointestinal reactions, and drug-related hepatitis [2–4]. Among them, cardiac and brain toxicity injuries are the focus of clinical attention, for the serious threat to the survival and prognosis of patients. Myocardial injury caused by short-term adriamycin intervention is mainly manifested as arrhythmia, while a long time of adriamycin intervention will lead to the accumulation of adriamycin, which will lead to dilated cardiomyopathy and congestive heart failure [5]. In recent years, accumulated evidence has suggested that DOX may cause cognitive decline [6, 7].
Patients’ quality of life and survival are significantly affected by DOX-induced cardiotoxicity and neurotoxicity, but no effective medications to prevent or treat these side effects have been found. A amount of evidence has demonstrated the significant role of oxidative stress (OS) played in cardiac and brain damage induced by DOX [8]. After DOX treatment, cardiac and brain tissues showed elevated levels of OS, such as superoxide dismutase (SOD)1, glutathione peroxidase (GPx), and catalase (CAT) expression [9–11]. These findings underscore that targeting the OS pathway-specifically by enhancing the activity of endogenous antioxidant enzymes or supplementing with exogenous antioxidant agents-offers a promising therapeutic direction for preventing or alleviating DOX-induced cardiac and brain toxicity.
OS arises from the imbalance of reactive oxygen species (ROS) and antioxidants. Many researches revealed that DOX-induced OS in cardiac and brain tissues can be decreased by molecules with antioxidant properties [12]. Canadine is an alkaloid that inhibits cholinesterase activity [13] and has various pharmacological activities such as muscle relaxation, antioxidants, and antitumor [14–16]. Jakub Chlebek et al. also identified Canadine as a potential drug for the treatment of Alzheimer’s disease [17], and anti-OS is presumed to be an important mechanism for its efficacy. However, the role of Canadine on cardiac and brain damage induced by DOX remains to be investigated.
In this study, we first identified differentially expressed genes in GSE178812 (mouse hippocampal sample) and GSE59672 (mouse heart sample) after DOX intervention from the Gene Expression Omnibus (GEO) database and then intersected them with OS-related genes to reveal Canadine as a potential molecule to reverse DOX-induced elevated OS in cardiac and brain by the Connectivity Map (Cmap) database. Finally, we verified that Canadine was an effective agent to reduce the level of OS treated with DOX in H9C2 and PC12 cells.
Materials and methods
Data collection
The cardiac transcriptome data GSE59672 and the hippocampal transcriptome data GSE178812 were obtained from the GEO database. The GSE59672 dataset contains 3 DOX-treated heart samples and 3 normal heart samples. The GSE178812 dataset contains 3 DOX-treated hippocampi samples and 3 normal hippocampi samples. We performed log2 transformation for gene expression profiling. To identify OS-related genes for screening, 8286 OS protein structural domains were obtained from the GeneCards database, and 2459 OS-related genes (relevance scores ≥3) were used for subsequent analysis.
Data quality control and normalization
The expression matrices of the GSE59672 and GSE178812 datasets were normalized; box line plots were used to examine the trends of the dataset distribution; correlations between samples in the same dataset were visualized using correlation heat maps, and correlation heat maps and box plots were plotted using R software.
Differentially expressed OS-related genes (DEOGs)
Differentially expressed genes between the DOX-treated group and the control group in hippocampi/heart tissue were analyzed using the limma package in R [18]. The threshold values were p value < 0.05 and |log2 Fold change (FC) | > 0.4. Defined as OS-related genes, the intersection of GSE59672 and GSE178812 datasets differentially expressed genes were differential genes related to OS in heart and hippocampi tissues. Venn diagram and heat map were plotted using R software.
Gene ontology (GO) and kyoto gene and genome encyclopedia (KEGG) enrichment analysis
R 4.2.0 was installed with the “colorspace,” “stringi,” and “ggplot2” packages, “DOSE,” “clusterProfiler,” and “enrichplot” bioconductor packages were used for the study of GO and KEGG enrichment.
Construction of protein-protein interaction (PPI) network and screening of key genes
The PPI information of DEOGs was achieved in the STRING database (https://string-db.org/). The construction of PPI networks was established with the interaction database by Cytoscape 3.9.1 software [19]. The virtual modules and key genes were selected from the PPI network with Molecular Complex Detection (MCODE) node count > 7, p < 0.05 [20].
Drug sensitivity analysis
Predicting effective agents for reducing DOX-induced OS levels in heart and hippocampi tissues by key genes using the Cmap database. Using the SPIEDw web tool (http://www.spied.org.uk/) [21], the Cmap database (http://portals.broadinstitute.org/cmap/) was interrogated with 9 key genes.
Molecular docking analysis
The PDB database (https://www.rcsb.org) was used to obtain the target proteins’ 3D structures. Using AutoDockTools-1.5.6 (updated 2014–09-17), the target proteins were modified by deleting the ligand and water motifs and adding hydrogen (Trott and Olson, 2010). Protein ligands and receptors were converted to PDBQT. The lowest free energy model was chosen following molecular docking using AutoDock Vina software, and PyMOL was applied to visualize and analyze the model. Individual dockings were conducted to determine docking scores (lower scores indicated successful docking results). Scores of less than −6 for docking are acceptable.
H9C2 and PC12 cells culture and processing
H9C2 and PC12 cells were purchased from the National Certified Cell Culture Collection (Shanghai, China) and cultured in DMEM (Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS, Thermo Fisher Scientific). After incubation for two days, the medium was replaced. Experiments were performed using approximately 70–80% confluent cells. Cells were treated with DOX (Myerol, Shanghai, China) at various concentrations as indicated for 24 hours. Cells had a 24-hour pretreatment with Canadine (0–2 μM) (EFEBIO, Shanghai, China) before being added to a medium containing 1 μM DOX and incubated for an additional 24-hour period in the experimental group.
Cell viability
The CCK-8 test was used to assess how DOX/Canadine/(Canadine+DOX) affected the activity of H9C2 and PC12 cells. In brief, 96-well plates with growth medium were injected with 3 × 103 H9C2/PC12 cells. After the cells were treated as described above, 10 μL of CCK-8 (BBI Life Sciences, Shanghai, China) were added to the 96-well plate and incubated for an hour. Each well’s absorbance value at 450 nm was determined spectrophotometrically using an enzyme marker (Bio-Tek, USA). Six repetitions were run through each experiment.
ROS activity measurement
After being washed with phosphate-buffered saline (PBS), the cells were incubated with 2.5 mM dihydroethidium (DHE, green) at 37 °C for 30 minutes, followed by staining with Hoechst 33342 (blue) for the same duration.A laser-scanning confocal microscope was then used to view the cells, and Image J software was used to analyze the images (version 6.0). Then the average fluorescence intensity of each cell and the average fluorescence intensity emitted by each field of cells were calculated to analyze the data.
Lipid peroxidation malondialdehyde (MDA) assay
The Lipid Peroxidation MDA Assay Kit (JC410852, Nanjing Jian cheng Institute of Biological Engineering) was used to determine the MDA content in H9C2/PC12 cells. Absorbance measurements were performed at 532 nm.
Q-PCR
Trizol (Invitrogen, USA) was used to extract total RNA, and cDNA was created using the reverse transcription reagent PrimeScript™ RT Master Mix (Takara, Japan) per the manufacturer’s instructions. Real-time quantitative PCR (RT-PCR) with gene-specific primers was performed using a TB green premix ex Taq Kit (Takara, Japan). As an internal reference, the polymerase chain reaction data of β-actin were employed. The primers for the PCR of genes were listed in Table 1.
Table 1.
List of RT-PCR primers
| Gene | ForwardPrimer(5´-3´) | ReversePrimer(5´-3´) |
|---|---|---|
| Cat | TTGCCTTGTTTGTCTTTCGCCATTG | GTGCTTGTGCCGTCTTGTATGTTG |
| Sod1 | CACAGTGCAGTAGCCATCCATTCC | CCCTCCCTACCCATCTTCCCTAAC |
| Col1a1 | TGACTGGAAGAGCGGAGAGT | GATAGCGACATCGGCAGGAT |
| Lox | ATGGCACCGGTTACTTCCAG | GATAGCGACATCGGCAGGAT |
| Col1a2 | TGTCGATGGCTGCTCCAAAA | CCGATGTCCAGAGGTGCAAT |
| Ogn | CGTGCCTCTGACACAGCAAA | GGCATGTGGGCATTTCATCATTT |
| Myoc | AGAGGGAGACAAAGGATGTGG | CCAACCGTGTCAATCCTCCA |
| Jph2 | CAAGAGCAACAAGGTTCGCC | CTGATACTCCGGACCTGGCT |
| Casp1 | GGAGCTTCAGTCAGGTCCAT | CTTGAGGGAACCACTCGGTC |
| Aldh1a2 | ACAGGGCAACTCTTGCAACTA | CTCCGATGGGCTCATGTCTC |
| Cfh | CAGGCAACCTACAAATGCCG | CCCACATGGCCTTTTCCGA |
Statistical analysis
We used GraphPad Prism 8.0.2 and version 4.2.0 of R software for statistical analysis. All data were provided as the mean ± SEM. Two-tailed unpaired t-tests were used to compare two groups, while one-way or two-way (if there were two-factor levels) ANOVA (analysis of variance) was used to compare multiple groups, followed by Bonferroni correction for post hoc multiple comparisons. p < 0.05 were regarded as statistically significant.
Results
Identification of differential genes in heart and hippocampi tissues
The expression matrices of the GSE59672 and GSE178812 datasets were normalized, and box plots showed good normalization with comparable distributions across all samples (Fig. 1A–B). Pearson’s correlation test revealed a substantial association between the samples (Fig. 1C–D). The GSE59672 and GSE178812 datasets identified 2213 and 724 differential genes (Fig. 1E–F).
Fig. 1.
Identification of differential genes in heart and hippocampi tissues. Box plots (A-B), correlation heatmap (C-D) and volcano-plot (E-F) of the GSE178812 and GSE59672 datasets
Identification and GO/KEGG analysis of differentially expressed DEOGs
The differential genes in the GSE59672 and GSE178812 datasets had a total of 20 intersecting genes with OS-related genes (Fig. 2A). Figures 2B and 2C show the expression of DEOGs in heart (GSE59672) and hippocampi (GSE178812) tissues, respectively. The activities of the acquired DEOGs were annotated to further investigate their role in the pathogenesis of DOX-induced OS damage in heart and hippocampi tissues. In the KEGG enrichment analysis, differentially expressed DEOGs were primarily enriched in protein digestion and absorption, and platelet activation (Figs 2D).
Fig. 2.
Identification and GO/KEGG analysis of the DEOGs. (A) venn diagram depicting the DEOGs. (B-C) heatmap of DEOGs genes in the GSE59672 and GSE178812 datasets. (D) histograms and circle plots of GO enrichment for DEOGs. (E) histograms and circle plots of KEGG for DEOGs
The most notable GO enrichment word was wound healing and ossification (Biological Processes); collagen−containing extracellular matrix (ECM) and secretory granule (Cellular Component); ECM structural constituent and phosphatidylinositol phosphate binding (Molecular Function) (Figs 2E).
PPI regulatory network and module analysis, key gene Identification and analysis
The DEOGs PPI regulatory network was established (Fig. 3A). The PPI regulatory network contained 35 nodes and 135 interaction pairs. Then, the network’s most important modules and central genes were screened by the MCODE plugin of Cytoscape software (Fig. 3B). 9 key genes include Col1a1, Lox, Col1a2, Ogn, Myoc, Jph2, Casp1, Aldh1a2, and Cfh. Among these genes, Col1a1 and Col1a2 are core subunits of type I collagen, participating in the synthesis and assembly of ECM. DOX-induced upregulation of these two genes promotes ECM deposition, thereby exacerbating OS-mediated damage [22, 23]; Lox catalyzes collagen cross-linking and synergizes with the former two to exacerbate ECM disruption [24]; Ogn and Myoc maintain tissue elasticity by regulating collagen arrangement [25]. Jph2 preserves calcium homeostasis in cardiomyocytes, and its dysregulation can induce mitochondrial dysfunction and ROS production [26]; Casp1 mediates OS-dependent cell death [27]; Aldh1a2 is involved in antioxidant metabolism [28]; Cfh negatively regulates the complement system, and its abnormality amplifies OS-related inflammation [5, 29].
Fig. 3.
PPI regulatory network of the DEOGs and GO/KEGG analysis of the key genes. (A) PPI regulatory networks of the DEOGs. (B) PPI regulatory networks of the key genes. (C) histograms and circle plots of GO enrichment for key genes. (D) histograms and circle plots of KEGG for the key genes
We adopted R software to perform GO and KEGG enrichment analysis to investigate the probable biological roles of these key genes. In the KEGG enrichment analysis, DEOGs were mainly involved in ECM−receptor interaction, AGE−RAGE signaling pathway, protein digestion and absorption, and platelet activation in diabetic complications (Fig. 3C). The results showed that the most significant GO-enriched words were bone development and ossification (Biological Processes); collagen−containing ECM and collagen trimer (Cellular Component); ECM structural constituent and platelet−derived growth factor binding (Molecular Function) (Fig. 3D).
Canadine was a candidate for reducing the level of DOX-induced oxidative stress in the heart and hippocampi tissues
To identify drug candidates for reducing the level of DOX-induced OS in the heart and hippocampi, 9 key genes were used to interrogate the Cmap database (https:/http://portals.broadinstitute.org/cmap/) [30]using the SPIEDw web tool (http://www.spied.org.uk/). Figure 4A-B showed the top 20 compounds we identified (10 positively correlated and 10 negatively with key genes) and the correlation of these compounds with key genes. Among those compounds, Sulfamonomethoxine, Adiphenine, and Canadine were highly negatively correlated with DOX-induced levels of OS in the heart and hippocampi, suggesting that these compounds may have potential therapeutic effects. Sulfamonomethoxine is a sulfonamide spectrum antibiotic widely used in veterinary medicine [31]. However, long-term administration of Sulfamonomethoxine may lead to neurological damage
Fig. 4.
Cmap analyse. Histogram of the top 10 drugs with positive correlations and the top 10 drugs with negative correlations. Heat map of drug (A) and gene correlations (B)
[32, 33]. Adiphenine is a local anesthetic [34]. Canadine is an alkaloid, and Canadine has also been previously reported to have anti-OS effects [15]. Therefore, we selected Canadine as a potent candidate for the treatment of tissue damage induced by DOX.
Molecular docking results
To further explore the structural basis of Canadine’s multi-target regulation, we performed molecular docking between Canadine and the 9 key genes identified in our study. We noted that the docking scores of COL1A1, LOX, OGN, JPH2, ALDH1A2, and CFH, ranged from −8.5 to −5.5, and all key proteins exhibited good binding affinity with Canadine (Fig. 5A–F).
Fig. 5.
Structural interactions between Canadine and key target receptors. (A-F) structural interactions of Canadine and key target receptors (CHF, ALDH1A2, LOX, COL1A1, JPH2 and OGN)
Viability of H9C2 and PC12 cells after Canadine and DOX treatment
DOX decreased the viability of H9C2 and PC12 cells in a concentration-dependent manner after 24 hours of incubation. The viability of H9C2 and PC12 cells at 1 μM DOX concentration of 1 μM was 69.8% and 65.1%, respectively (Fig. 6A–B). There was no effect on the viability of H9C2 and PC12 cells in the concentration range of Canadine 0–2 μM (Fig. 6C–D). Notably, co-treatment with Canadine at 0.5 μM and 1 μM exerted a robust protective effect: H9C2 cell viability was restored to 88.46% and 88.80% of the control, while PC12 cell viability recovered to 89.54% and 93.49%(Fig. 6E–F).
Fig. 6.
Viability of H9C2 and PC12 cells after Canadine and DOX treatment. (A-B) viability of H9C2 and PC12 cells treatment with 0–10 μM DOX after 24 hours. (C–D) viability of H9C2 and PC12 cells after 48 h of treatment with 0–2 μM Canadine after 48 hours. n = 6, *p < 0.05, **p < 0.01, ****p < 0.001 compared with the control. (E-F) viability of H9C2 and PC12 cells treated with 0–2 μM Canadine and 1 μM DOX, and Canadine were pretreated for 24 hours before co-culturing with DOX for the following 24 hours. n = 6, *p < 0.05, ****p < 0.001 compared with the DOX group. Statistical analysis was performed using one-way ANOVA with Bonferroni’s post-hoc test. All dataare presented as mean±SEM
Canadine ameliorates oxidative stress levels in H9C2 and PC12 cells after DOX treatment
Previous studies have revealed that OS was one of the main mechanisms of tissue damage caused by DOX [35, 36]. Compared to untreated cells, exposure to DOX alone increased ROS levels in H9C2 and PC12 cells by a factor of 4.0 and 2.9, respectively (Fig. 7Aand B, Fig. 7E and G). Relative to the DOX-only group, ROS levels were reduced by 43 and 38% in H9C2 cells, and 52 and 55% in PC12 cells treated with Canadine (0.5 μM or 1 μM) + 1 μM DOX, respectively(p < 0.001) (Fig. 7A and B, Fig. 7E and G). We also examined the changes in mRNA expression of OS genes (Cat, Sod1) and MDA content. The results showed that Cat and Sod1 mRNA expression decreased significantly and MDA content increased significantly in the DOX group, while Canadine co-culture could partially reverse this change in H9C2 and PC12 cells (Fig. 7C–F, Fig. 7H–J).
Fig. 7.
Oxidative stress levels in H9C2 cardiomyocytes and PC12 neuronal cells after Canadine and DOX treatment. The Canadine was pretreated for 24 hours before co-culturing with DOX for the following 24 hours. (A and B) DHE staining of H9C2. (C and D) Sod1 and Cat mRNA expression of H9C2 cells. (E) MDA content of H9C2 cells. (F and G) DHE staining of PC12. (H and I) Sod1 and Cat mRNA expression of PC12 cells. (J) MDA content of PC12 cells. n = 6, **** p < 0.001 compared with the control, #### p < 0.001, compared with the DOX group. Statistical analysis was performed using one-way ANOVA with Bonferroni’s post-hoc test. All dataare presented as mean±SEM
Relationship between Canadine and 9 key genes in H9C2 and PC12 cells
We investigated the effect of Canadine on key genes in H9C2 and PC12 cells. In H9C2 cells, compared with the control group, doxorubicin (DOX) treatment significantly upregulated the mRNA expression of 9 key genes and simultaneously downregulated Aldh1a2 transcription. Canadine could inhibit the mRNA expression of 6 genes (Col1a1, Col1a2, Lox, Myoc, Casp1, and Cfh) and reverse the downregulation of Aldh1a2 (Fig. 8A-I).
Fig. 8.
Relationship between Canadine and 6 key genes in H9C2 and PC12 cells. The Canadine was pretreated for 24 hours before co-culturing with DOX for the following 24 hours. (A-F) Col1a1, Lox, Col1a2, Ogn, Myoc, Jph2, Casp1, Aldh1a2, and Cfh mRNA expression of H9C2. (G-M) Col1a1, Lox, Col1a2, Ogn, Myoc, Jph2, Casp1, Aldh1a2, and Cfh mRNA expression of PC12. n = 6, *p < 0.05, ****p < 0.001 compared with the DOX group,#### p < 0.001, compared with the DOX group statistical analysis was performed using one-way ANOVA with Bonferroni’s post-hoc test
In PC12 cells, DOX treatment upregulated 6 genes (Col1a1, Col1a2, Lox, Casp1, Jph2, and Cfh) and similarly downregulated Aldh1a2 mRNA expression. Furthermore, Canadine could specifically downregulate the aberrant transcriptional activation of Col1a1, Col1a2, Lox, Casp1, Jph2, and Cfh, while restoring the normal mRNA expression level of Aldh1a2 (Fig. 8J-R).
Discussion
In this study, we first revealed that Canadine is a potential drug to reverse DOX-induced OS gene differentiation in cardiac and brain tissues by analyzing GSE178812 (mouse hippocampi samples), GSE59672 (mouse heart samples), and OS-related genes through the Cmap. We further confirmed that Canadine reduced DOX-induced OS in vitro.
DOX, an anthracycline antitumor agent, interferes with DNA transcription and mRNA synthesis in tumor cells by embedding in the nucleic acid double strand and inhibiting topoisomerases, thereby inhibiting the proliferation of tumor cells in different growth cycles [37]. DOX damages healthy tissues through apoptosis, ferroptosis, autophagy, and OS, among which OS was confirmed to be a key mechanism of tissue damage [7, 38, 39]. After DOX treatment, lipid peroxidation, increased ROS production, and reduced ATP synthesis in heart and brain cells cause tissue damage [8, 40].
First, we identified 20 differentially expressed OS-related genes (DEOGs) in DOX-treated cardiac and hippocampal tissues, including Kcnq1, Chat, and Trim63 with established links to DOX toxicity. For instance, Lercanidipine has been reported to alleviate DOX-induced neuroinflammation via activating CHAT [41]. Inhibiting Trim63 has been shown to alleviate fatty acid oxidation deficiency and mitochondrial dysfunction, while also restoring podocyte injury and renal fibrosis in models of acute renal failure and diabetic nephropathy [42, 43]. Additionally, KCNP1 serves as a biomarker for DOX-induced dilated cardiomyopathy in breast cancer patients [44]. Notably, KEGG enrichment analysis revealed shared pathways and biological processes between the two tissues, including “protein digestion and absorption,” “platelet activation,” and “ECM-receptor interaction”-all closely linked to OS amplification. Consistent with prior reports [45, 46], the “protein digestion and absorption” pathway regulates ECM protein metabolism (e.g., collagen degradation via collagenases), and its disruption exacerbates ECM deposition, activates integrin-mediated stress signaling, and promotes ROS generation [47, 48]. The “platelet activation” pathway contributes to OS via releasing inflammatory factors that activate NF-κB signaling and induce ROS production, while platelet-derived thromboxane A2 impairs vascular endothelial function and tissue oxygen supply [49, 50]. Furthermore, the KEGG enrichment analysis identified ECM-receptor interaction as a core pathway dysregulated in DOX-induced cardiac and brain injury-a finding highly consistent with the known pathophysiology of DOX toxicity. DOX has been reported to disrupt ECM homeostasis by upregulating pro-fibrotic genes, leading to excessive ECM deposition, tissue stiffness, and impaired cellular communication [22, 24]. The ECM-receptor interaction pathway mediates the crosstalk between ECM components and cell surface integrins, activating downstream signaling cascades that amplify OS and programmed cell death [51].
The study also found that DOX-treated OS-related genes in the heart and hippocampi after DOX treated showed the same signaling pathways and GO terms, such as protein digestion and absorption signaling pathway, ossification GO terms, which are closely related to OS [45, 46]. The integrated analysis of transcriptomes from different tissues is an effective analytical strategy to investigate the genetic characteristics present in different diseases. For example, Menghui Yao et al. revealed nicotinic acid-related molecular functions and pharmacological targets for the treatment of rectal cancer/COVID-19 by analyzing the gene expression profiles of rectal cancer and COVID-19 patients [52]. In another study, a transcriptomic analysis of systemic lupus erythematosus and pulmonary hypertension identified a high interferon response in patients with systemic lupus erythematosus as a possible key susceptibility factor for pulmonary hypertension [53].
To translate these transcriptomic findings into potential interventions, we screened 10 optimal candidate compounds for the DEOG feature using Cmap, including Sulfamonomethoxine, Adiphenine, Canadine, and Naringenin. Naringenin has already been reported to attenuate DOX-induced cardiac OS levels by promoting the expression of ECHS1 [54], while Sulfamonomethoxine (a veterinary antibiotic) and Adiphenine (a local anesthetic) were excluded due to neurotoxic risks and limited relevance to OS regulation [31–34].
Canadine is an alkaloid extracted from corydalis cavernosa and it is widely found in nature and has good biological activity and development value [55]. Many studies show that alcaloid played pharmacological role by reducing OS [56, 57] and previous researches report also showed that Canadine have anti-OS function [15]. Canadine has also been reported to inhibit cholinesterase and prolyl oligopeptidase activity and may alleviate cognitive impairment in Alzheimer’s disease [17, 58].
Molecular docking further provided structural evidence for Canadine’s multi-target activity, showing favorable binding affinity (docking scores: −5.5 to −8.5 kcal/mol) with six core DEOGs: CHF, ALDH1A2, LOX, COL1A1, JPH2 and OGN. These proteins play distinct but complementary roles in OS regulation: ALDH1A2 (lipid peroxide scavenger) and CFH (complement system inhibitor) directly modulate OS [28, 59], while COL1A1, LOX, OGN, and JPH2 are critical nodes in OS-amplifying pathways (ECM remodeling, calcium homeostasis, mitochondrial function) [60–63]. Hypothetically, Canadine exerts protective effects via dual mechanisms: 1) directly enhancing the activity of OS regulators; and 2) interfering with pro-OS functions of ECM/calcium-related proteins. These structural predictions align with our in vitro data-Canadine reduced ROS levels and modulated DEOG transcription-reinforcing a multi-level OS-targeting mechanism. However, the docking results are preliminary: direct binding affinity and functional modulation require validation via biochemical assays, and the specific link between Canadine binding and OS reduction for indirect targets warrants further investigation.
In vitro experiments using H9C2 and PC12 cells clarified Canadine’s tissue-specific regulatory effects on DEOG transcription. In H9C2 cells, DOX significantly upregulated Col1a1, Col1a2, Lox, Myoc, Casp1, and Cfh, while downregulating Aldh1a2. Canadine concentration-dependently reversed these transcriptional abnormalities, targeting ECM homeostasis, inflammatory apoptosis, and antioxidant networks to block cardiomyocyte injury. In PC12 cells, DOX upregulated Col1a1, Col1a2, Lox, Casp1, Jph2, and Cfh and downregulated Aldh1a2, with no significant change in Myoc-reflecting tissue specificity, as Myoc is a muscle-enriched factor with low neuronal expression [64]. In neuronal cells, COL1A1/Col1a2-mediated fibrosis [65, 66], Lox-induced ROS production [67], Casp1-dependent pyroptosis [68], and Cfh-amplified neuroinflammation [69] contribute to OS injury. Notably, Aldh1a2 downregulation was a shared mechanism across both cell types, indicating antioxidant metabolic deficiency as a conserved driver of DOX-induced cardiac and cerebral toxicity [28, 70]. Canadine’s reversal of Aldh1a2 mRNA expression further confirms its targeting specificity.
Beyond OS scavenging, Canadine exerted robust cytoprotective effects, restoring the viability of DOX-injured H9C2 and PC12 cells to near-normal levels at 0.5 μM and 1 μM. This protection likely stems from synergistic regulation of third interconnected pathways: 1) reducing OS via scavenging ROS, upregulating antioxidant enzymes, and reversing Aldh1a2 inhibition to mitigate damage to mitochondria and DNA [28]; 2) inhibiting OS-dependent programmed cell death (apoptosis/pyroptosis) via downregulating Casp1 [27]; and 3), Canadine may inhibit excessive ECM deposition and block integrin-mediated pro-injury signaling, synergizing with its antioxidant activity to alleviate DOX-induced tissue damage [71, 72].
There are some limitations in this study. Firstly, DOX-treated heart samples and hippocampi samples were obtained from mice with different DOX doses and treatment times, which may lead to errors in gene expression. Secondly, we only validated Canadine is a potential treatment for DOX-induced OS levels in H9C2/PC12 cells, but not in animal or human clinical trials. Thirdly, while we detected changes in key gene mRNA expression via qPCR, we did not validate their protein expression levels or post-translational modifications in vitro-leaving the functional consequences of transcriptional regulation incompletely verified. Fourthly, the molecular docking results provide preliminary structural evidence for the interaction between Canadine and key target proteins, but lack in vitro biochemical validation of binding affinity and specific regulatory mechanisms. Fifth, we validated the expression of differentially expressed OS-related genes (DEOGs) in mouse samples but did not fully explore their intrinsic mechanisms in mediating DOX-induced injury in H9C2/PC12 cells or animal models. Finally, this study is based solely on the analysis of two transcriptome datasets, which may affect the universality and robustness of the conclusions.
Conclusion
In conclusion, our study indicates that OS is a key mechanism of cardiac and cerebral injury caused by DOX, and Canadine protects cardiomyocytes and brain cells against OS. It also has potential antitummor effects, so Canadine is one of the potential candidates against cardiotoxic and neurotoxicity injury induced by DOX, which deserves further clinical study to verify.
Acknowledgements
We would like to appreciate the public databases including GEO and HAGR for their contributions to human medicine.
Author contributions
The authors’ responsibilities were as follows—Mr. X, Z. had full access to all of the data in the study and takes responsibility for the integrity of the data and the accuracy of the data analysis. Concept and design: X, Z.; Acquisition, analysis, or interpretation of data: All authors. Drafting of the manuscript: Q, Z., X,Z.; Critical revision of the manuscript for important intellectual content: J,L., Q,L.; Statistical analysis: Q, Z., X,Z.; Administrative, technical, or material support: J,L.,; Supervision: J,L., Q, Z.
Funding
Science and Technology Plan of Jiangxi Provincial Administration of Traditional Chinese Medicine (2025022956).
Data availability
The data are public and can be downloaded from the GEO database and Human Ageing Genomic Resources.
Decleartion
Ethics declaration
not applicable.
Competing of interest
The authors declare no competing interests.
Footnotes
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Xianghui Zeng, Qingfeng Zeng, Qi Luo Contributed equally.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
The data are public and can be downloaded from the GEO database and Human Ageing Genomic Resources.









