Abstract
Bacteriorhodopsin (BR) is a transmembrane protein in the purple membrane (PM) of Halobacterium salinarum. Its function as a light-driven proton pump is associated with a cycle of photointermediates which is strongly hydration-dependent. Using energy-resolved neutron scattering, we analyzed the thermal motions (in the nanosecond-to-picosecond time range) in PM at different hydration levels. Two main populations of motions were found that responded differently to water binding. Striking correlations appeared between these "fast" motions and the "slower" kinetic constants (in the millisecond time range) of relaxations and conformational changes occurring during the photocycle.
Full Text
The Full Text of this article is available as a PDF (108.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Andreani C., Filabozzi A., Menzinger F., Desideri A., Deriu A., Di Cola D. Dynamics of hydrogen atoms in superoxide dismutase by quasielastic neutron scattering. Biophys J. 1995 Jun;68(6):2519–2523. doi: 10.1016/S0006-3495(95)80434-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cao Y., Váró G., Chang M., Ni B. F., Needleman R., Lanyi J. K. Water is required for proton transfer from aspartate-96 to the bacteriorhodopsin Schiff base. Biochemistry. 1991 Nov 12;30(45):10972–10979. doi: 10.1021/bi00109a023. [DOI] [PubMed] [Google Scholar]
- Cupane A., Leone M., Vitrano E., Cordone L., Hiltpold U. R., Winterhalter K. H., Yu W., Di Iorio E. E. Structure-dynamics-function relationships in Asian elephant (Elephas maximus) myoglobin. An optical spectroscopy and flash photolysis study on functionally important motions. Biophys J. 1993 Dec;65(6):2461–2472. doi: 10.1016/S0006-3495(93)81311-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Doster W., Cusack S., Petry W. Dynamical transition of myoglobin revealed by inelastic neutron scattering. Nature. 1989 Feb 23;337(6209):754–756. doi: 10.1038/337754a0. [DOI] [PubMed] [Google Scholar]
- Ferrand M., Dianoux A. J., Petry W., Zaccaï G. Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering. Proc Natl Acad Sci U S A. 1993 Oct 15;90(20):9668–9672. doi: 10.1073/pnas.90.20.9668. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fitter J., Lechner R. E., Buldt G., Dencher N. A. Internal molecular motions of bacteriorhodopsin: hydration-induced flexibility studied by quasielastic incoherent neutron scattering using oriented purple membranes. Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7600–7605. doi: 10.1073/pnas.93.15.7600. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fitter J., Lechner R. E., Dencher N. A. Picosecond molecular motions in bacteriorhodopsin from neutron scattering. Biophys J. 1997 Oct;73(4):2126–2137. doi: 10.1016/S0006-3495(97)78243-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Glaeser R. M., Jubb J. S., Henderson R. Structural comparison of native and deoxycholate-treated purple membrane. Biophys J. 1985 Nov;48(5):775–780. doi: 10.1016/S0006-3495(85)83835-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Grigorieff N., Ceska T. A., Downing K. H., Baldwin J. M., Henderson R. Electron-crystallographic refinement of the structure of bacteriorhodopsin. J Mol Biol. 1996 Jun 14;259(3):393–421. doi: 10.1006/jmbi.1996.0328. [DOI] [PubMed] [Google Scholar]
- Heberle J., Dencher N. A. Surface-bound optical probes monitor protein translocation and surface potential changes during the bacteriorhodopsin photocycle. Proc Natl Acad Sci U S A. 1992 Jul 1;89(13):5996–6000. doi: 10.1073/pnas.89.13.5996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kamikubo H., Oka T., Imamoto Y., Tokunaga F., Lanyi J. K., Kataoka M. The last phase of the reprotonation switch in bacteriorhodopsin: the transition between the M-type and the N-type protein conformation depends on hydration. Biochemistry. 1997 Oct 7;36(40):12282–12287. doi: 10.1021/bi9712302. [DOI] [PubMed] [Google Scholar]
- Korenstein R., Hess B. Hydration effects on the photocycle of bacteriorhodopsin in thin layers of purple membrane. Nature. 1977 Nov 10;270(5633):184–186. doi: 10.1038/270184a0. [DOI] [PubMed] [Google Scholar]
- Lechner R. E., Fitter J., Dencher N. A., Hauss T. Dehydration of biological membranes by cooling: an investigation on the purple membrane. J Mol Biol. 1998 Apr 3;277(3):593–603. doi: 10.1006/jmbi.1997.1597. [DOI] [PubMed] [Google Scholar]
- Loncharich R. J., Brooks B. R. Temperature dependence of dynamics of hydrated myoglobin. Comparison of force field calculations with neutron scattering data. J Mol Biol. 1990 Oct 5;215(3):439–455. doi: 10.1016/s0022-2836(05)80363-8. [DOI] [PubMed] [Google Scholar]
- Oesterhelt D., Krippahl G. Phototrophic growth of halobacteria and its use for isolation of photosynthetically-deficient mutants. Ann Microbiol (Paris) 1983 Jul-Aug;134B(1):137–150. doi: 10.1016/s0769-2609(83)80101-x. [DOI] [PubMed] [Google Scholar]
- Oesterhelt D., Stoeckenius W. Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol. 1974;31:667–678. doi: 10.1016/0076-6879(74)31072-5. [DOI] [PubMed] [Google Scholar]
- Ormos P., Chu K., Mourant J. Infrared study of the L, M, and N intermediates of bacteriorhodopsin using the photoreaction of M. Biochemistry. 1992 Aug 4;31(30):6933–6937. doi: 10.1021/bi00145a010. [DOI] [PubMed] [Google Scholar]
- Ormos P. Infrared spectroscopic demonstration of a conformational change in bacteriorhodopsin involved in proton pumping. Proc Natl Acad Sci U S A. 1991 Jan 15;88(2):473–477. doi: 10.1073/pnas.88.2.473. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Papadopoulos G., Dencher N. A., Zaccai G., Büldt G. Water molecules and exchangeable hydrogen ions at the active centre of bacteriorhodopsin localized by neutron diffraction. Elements of the proton pathway? J Mol Biol. 1990 Jul 5;214(1):15–19. doi: 10.1016/0022-2836(90)90140-h. [DOI] [PubMed] [Google Scholar]
- Pebay-Peyroula E., Rummel G., Rosenbusch J. P., Landau E. M. X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases. Science. 1997 Sep 12;277(5332):1676–1681. doi: 10.1126/science.277.5332.1676. [DOI] [PubMed] [Google Scholar]
- Rasmussen B. F., Stock A. M., Ringe D., Petsko G. A. Crystalline ribonuclease A loses function below the dynamical transition at 220 K. Nature. 1992 Jun 4;357(6377):423–424. doi: 10.1038/357423a0. [DOI] [PubMed] [Google Scholar]
- Rogan P. K., Zaccai G. Hydration in purple membrane as a function of relative humidity. J Mol Biol. 1981 Jan 5;145(1):281–284. doi: 10.1016/0022-2836(81)90344-2. [DOI] [PubMed] [Google Scholar]
- Rousso I., Friedman N., Lewis A., Sheves M. Evidence for a controlling role of water in producing the native bacteriorhodopsin structure. Biophys J. 1997 Oct;73(4):2081–2089. doi: 10.1016/S0006-3495(97)78238-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rupley J. A., Careri G. Protein hydration and function. Adv Protein Chem. 1991;41:37–172. doi: 10.1016/s0065-3233(08)60197-7. [DOI] [PubMed] [Google Scholar]
- Réat V., Patzelt H., Ferrand M., Pfister C., Oesterhelt D., Zaccai G. Dynamics of different functional parts of bacteriorhodopsin: H-2H labeling and neutron scattering. Proc Natl Acad Sci U S A. 1998 Apr 28;95(9):4970–4975. doi: 10.1073/pnas.95.9.4970. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sass H. J., Schachowa I. W., Rapp G., Koch M. H., Oesterhelt D., Dencher N. A., Büldt G. The tertiary structural changes in bacteriorhodopsin occur between M states: X-ray diffraction and Fourier transform infrared spectroscopy. EMBO J. 1997 Apr 1;16(7):1484–1491. doi: 10.1093/emboj/16.7.1484. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Váró G., Keszthelyi L. Photoelectric signals from dried oriented purple membranes of Halobacterium halobium. Biophys J. 1983 Jul;43(1):47–51. doi: 10.1016/S0006-3495(83)84322-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Váró G., Lanyi J. K. Distortions in the photocycle of bacteriorhodopsin at moderate dehydration. Biophys J. 1991 Feb;59(2):313–322. doi: 10.1016/S0006-3495(91)82225-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Váró G., Lanyi J. K. Thermodynamics and energy coupling in the bacteriorhodopsin photocycle. Biochemistry. 1991 May 21;30(20):5016–5022. doi: 10.1021/bi00234a025. [DOI] [PubMed] [Google Scholar]
- Weik M., Zaccai G., Dencher N. A., Oesterhelt D., Hauss T. Structure and hydration of the M-state of the bacteriorhodopsin mutant D96N studied by neutron diffraction. J Mol Biol. 1998 Jan 30;275(4):625–634. doi: 10.1006/jmbi.1997.1488. [DOI] [PubMed] [Google Scholar]
- Zaccai G., Gilmore D. J. Areas of hydration in the purple membrane of Halobacterium halobium: a neutron diffraction study. J Mol Biol. 1979 Aug 5;132(2):181–191. doi: 10.1016/0022-2836(79)90390-5. [DOI] [PubMed] [Google Scholar]
- Zaccai G. Structure and hydration of purple membranes in different conditions. J Mol Biol. 1987 Apr 5;194(3):569–572. doi: 10.1016/0022-2836(87)90683-8. [DOI] [PubMed] [Google Scholar]