Skip to main content
EFSA Journal logoLink to EFSA Journal
. 2011 Dec 9;9(12):2497. doi: 10.2903/j.efsa.2011.2497

Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2011 update)

EFSA on Biological Hazards (BIOHAZ)
PMCID: PMC13093172  PMID: 42016000

Abstract

EFSA is requested to assess the safety of a broad range of biological agents (including microorganisms and viruses) in the context of notifications for market authorisation as sources of food and feed additives, enzymes and plant protection products. The qualified presumption of safety (QPS) assessment was developed by EFSA for its own use to provide a generic risk assessment approach applicable across EFSA's scientific Panels, for biological agents notified for intentional use in the whole food chain. The safety of unambiguously defined biological agents at the highest taxonomic unit that is appropriate for the purpose for which an application is intended and the completeness of the body of knowledge are assessed. Identified safety concerns for a taxonomic unit are where sensible reflected as ‘qualifications’ when a recommendation for the QPS list is given. The list of QPS recommended biological agents is reviewed and updated annually. Therefore, the only valid list is the one in the most recent scientific opinion. The 2011 update reviews microorganisms previously assessed including bacteria, yeasts, filamentous fungi and viruses used for plant protection purposes and confirms the previous recommendations. The anamorph yeast form Phaffia rhodozyma of Xanthophyllomyces dendrorhous was included on the QPS list and to the qualification for yeasts ‘absence of resistance to antimycotics used for medical treatment of yeast infections’, the sentence was added that ‘in the case of Saccharomyces cerevisiae this qualification applies for yeast strains able to grow above 37 °C’. The body of knowledge of filamentous fungi and enterococci was updated and their ineligibility for the QPS list confirmed.

Keywords: Safety, QPS, bacteria, yeast, fungi, virus

EFSA Panel on Biological Hazards (BIOHAZ) ; Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2011 update). EFSA Journal 2011;9(12):2497. [82 pp.] doi: 10.2903/j.efsa.2011.2497.

Panel members: John Daniel Collins, Birgit Noerrung, Herbert Budka, Olivier Andreoletti, Sava Buncic, John Griffin, Tine Hald, Arie Havelaar, James Hope, Günter Klein, James McLauchlin, Christine Müller‐Graf, Kostas Koutsoumanis, Christophe Nguyen‐The, Luisa Peixe, Miguel Prieto Maradona, Antonia Ricci, John Sofos, John Threlfall, Ivar Vågsholm and Emmanuel Vanopdenbosch

Correspondence: biohaz@efsa.europa.eu

Acknowledgement: The Panel wishes to thank the members of the Working Group on the maintenance of the list of QPS biological agents intentionally added to food or feed (2011 update): Pier Sandro Cocconcelli, Florence Richard Forget, Günter Klein, Tine Licht, Peixe Luisa, Christophe Nguyen‐The, Amparo Querol, Ulf Thrane, Just M. Vlak and Atte von Wright for the preparatory work on this scientific opinion and, the hearing expert: Malcolm Richardson, and EFSA staff: Renata Leuschner for the support provided to this scientific opinion.

Adoption date: 7 December 2011

Published date: 9 December 2011

Question number: EFSA‐Q‐2011‐00070

On request from: EFSA

References

  1. Abe Y, Negasawa T, Monma C and Oka A, 2008. Infantile botulism caused by Clostridium butyricum type E toxin. Pediatr Neurol. 2008 38, 1, 55–57. [DOI] [PubMed] [Google Scholar]
  2. Affokpon A, Coyne DL, Htay CC, Agbèdè RD, Lawouin L and Coosemans J, 2011. Biocontrol potential of native Trichoderma isolates against root‐knot nematodes in West African vegetable production systems. Soil Biol. Biochem. 43, 3, 600–608. [Google Scholar]
  3. Ammor MS, Flórez AB, van Hoek AH, de Los Reyes‐Gavilán CG, Aarts HJ, Margolles A and Mayo B, 2008. Molecular characterization of intrinsic and acquired antibiotic resistance in lactic acid bacteria and bifidobacteria. J. Mol. Microbiol. Biotechnol. 14, 1–3, 6‐15. [DOI] [PubMed] [Google Scholar]
  4. Anand R and Tiwary BN, 2010. Cytokine profile and cytotoxicity in response to acute intratracheal dose of Metarhizium anisopliae in BALB/c mice. Med. Mycology 48, 8, 1039–1048. [DOI] [PubMed] [Google Scholar]
  5. Anita K, Fernandez N and Rao R, 2010. Fungal endophtalmitis caused by Paecilomyces variotii, in an immunocompetent patient, following intraocular lens implantation. Indian J. Med. Microbiol. 28, 3, 253–254. [DOI] [PubMed] [Google Scholar]
  6. Anonymous, 1992, International Code of Nomenclature of Bacteria. Bacteriological Code, 1990 Revision. Edited by Lapage SP, Sneath PHA, Lessel EF, Skerman VBD, Seeliger HPR, and Clark WA. Washington (DC): ASM Press; 1992. ISBN‐10: 1–55581‐039‐X. [PubMed] [Google Scholar]
  7. Anonymous, 2001. Notification that new names and new combinations have appeared in volume 51, part 3, of the IJSEM. Int. J. Syst. Evol. Microbiol. 2001, 51, 1231–1233. [DOI] [PubMed] [Google Scholar]
  8. Anonymus, 2002. OECD Consensus document on inforamtion used in the assessment of environmental applications involving baculoviruses. Series on Harmonisation of Regulatory Oversight in Biotechnology, Vol. 20. ENV/JM/MONO(2002)1, 90pp. [Google Scholar]
  9. Anonymous, 2007. Clinical and Laboratory Standards Institute (CLSI). Methods for antimicrobial dilution and disk susceptibility testing of infrequently isolated or fastidious bacteria; approved guideline. CLSI document M45‐A (ISBN 1–56238‐607‐7). CLSI, Wayne, Pennsylvania: [Google Scholar]
  10. Anonymous, 2008, Judical Commission of the International Committee on Systematics of Procaryotes: The genus name Sinorhizobium Chen et al. 1988 is a later synonym of Ensifer casida 1982 and is not conserved over the latter genus name, and the species name ‘Sinorhizobium adhaerens’ is not validly published. Opinion 84. Int. J. Syst. Evol. Microbiol. 2008, 58, 1973. [DOI] [PubMed] [Google Scholar]
  11. Anonymous, 2010. International Committee on Taxonomy of Viruses (ICTV). Retrieved on 24 October 2011 at www.ictvonline.org.
  12. Anonymous, 2011. List of prokaryotic names with standing nomenclature (LPSN). Retrieved from the website on 19 August 2011 [www.bacterio.cict.fr/].
  13. Aureli P, Capurso L, Castellazzi AM, Clerici M, Giovannini M, Morelli L, Poli A, Pregliasco F, Salvini F and Zuccotti GV, 2011. Probiotics and health: An evidence‐based review. Pharmacol. Res. 63, 366–376. [DOI] [PubMed] [Google Scholar]
  14. Ayeni FA, Sánchez B, Adeniyi BA, de los Reyes‐Gavilán CG, Margolles A and Ruas‐Madiedo P, 2011. Evaluation of the functional potential of Weissella and Lactobacillus isolates obtained from Nigerian traditional fermented foods and cow's intestine. Int. J. Food Microbiol. 147, 97–104. [DOI] [PubMed] [Google Scholar]
  15. Baltimore D, 1971. Expression of animal virus genome. Bacteriol. Rev. 35, 235–241. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Baltimore D, 1974. The strategy of RNA viruses. Harvey Lect. 70 Series, 57–74. [PubMed]
  17. Bernabeu JL, Leo E, Trigo C, Herrera JM, Sousa JM and Marquez JL, 2011. Crohn's disease and liver abscess due to Pediococcus sp. Inflamm Bowel Dis. 17, 10, 2207–2208. [DOI] [PubMed] [Google Scholar]
  18. Bernier M, Njomnang Soh P, Lochet A, Prots L, Félice R, Senescau A, Fabre R and Philippon A, 2010. Philippon A. [Lactobacillus delbrueckii: Probable agent of urinary tract infections in very old women.]. Pathol Biol (Paris). 2010 Jun 2. [Epub ahead of print] French. PubMed PMID: 20605373. [DOI] [PubMed]
  19. Bertinetti BV, Rodriguez MA, Godeas AM and Cabrera GM. 2010. 1H,1′H‐3, 3′biindolyl from the terrestrial fungus Gliocladium catenulatum . J. Antibiotics 63, 11, 681–683. [DOI] [PubMed] [Google Scholar]
  20. Brimner T and Boland G, 2003. A review of the non‐target effects of fungi used to biologically control plant diseases. Agricult. Ecosys. Environ. 100, 3–16. [Google Scholar]
  21. Casida LE, 1982. Ensifer adhaerens gen. nov., sp. nov.: A bacterial predator of bacteria in soil. Int. J. Syst. Bacteriol. 32, 339–345. [Google Scholar]
  22. Chanos P and Williams DR, 2011. Anit‐Listeria bacteriocin‐producing bacteria from raw ewe's milk in northern Greece. J. Appl. Microbiol. 110, 757–768. [DOI] [PubMed] [Google Scholar]
  23. Chen WX, Yan GH and Li JL, 1988. Numerical taxonomic study of fast‐growing soybean Rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov. Int. J. Syst. Bacteriol. 38, 392–397. [Google Scholar]
  24. Chenoll E, Casinos B, Bataller E, Astals P, Echevarria J, Iglesias JR, Balbarie P, Ramón D and Genovés S, 2010. A novel probiotic Bifidobacterium bifidum CECT 7366 strain active against the pathogenic bacteria Helicobacter pylori . Appl. Environ. Microbiol. 77, 4, 1335–1343. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Cintas LM, Herranz C and Hernández PE, 2011. Natural and heterologous production of bacteriocins. Chapter 8 in: Prokaryotic antimicrobial peptides, from genes to applications. Drider D and Rebuffat S (eds), pp. 115–143, Springer Science+Business media; (www.springer.com). [Google Scholar]
  26. Christensen S and Kolomiets M, 2011. The lipid language of plant‐fungal interactions. Fungal Gen. Boil. 48, 4–14. [DOI] [PubMed] [Google Scholar]
  27. Ciecko S and Scher R, 2010. Invasive fungal rhinitis caused by Paecilomyces lilacinus infection: report of a case and a novel treatment. Ent‐Ear Nose Throat J. 89, 12, 594–595. [PubMed] [Google Scholar]
  28. Clementi F and Aquilanti L, 2011. Recent investigations and updated criteria for the assessment of antibiotic resistance in food lactic acid bacteria. Anaerobe in press. [DOI] [PubMed]
  29. Cocconcelli PS, Cativelli D and Gazzola S, 2004. Gene transfer of vancomycin and tetracycline resistances among Enterococcus faecalis during cheese and sausage fermentation. Int. J. Food Microbiol. 88, 315–323. [DOI] [PubMed] [Google Scholar]
  30. Costa‐Riu N, Burkovski, A , Krämer R and Benz R. 2003. PorA represents the major cell wall channel of the gram‐positive bacterium Corynebacterium glutamicum . J. Bact. 185, 4779–4786. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Cousin FJ, Mater DDG, Foligné B and Jan G, 2011. Dairy propionibacteria as human probiotics: A review of recent evidence. Dairy Sci. Technol. 91, 1–26. [Google Scholar]
  32. Coutte F, Leclere V, Bechet M, Guez JS, Lecouturier D, Chollet‐Imbert M, Dhulster P and Jacques P, 2010. Effect of pps disruption and constitutive expression of srfA on surfactin productivity, spreading and antagonistic properties of Bacillus subtilis 168 derivatives. J. Appl. Microbiol. 109. 2, 480–491. [DOI] [PubMed] [Google Scholar]
  33. Cvetnic Z and Pepeljnjak S, 1997. Distribution and mycotoxin‐producing ability of some fungal isolates from the air. Atmospheric Environ. 31, 3, 491–495. [Google Scholar]
  34. Dai L, Wu C‐M, Wang M‐G, Wang Y, Wang Y, Huang S‐Y, Xia L‐N, Li B‐B and Shen J‐Z, 2010. First report of the multidrug resistance gene cfr and the phenicol resistance gene fexA in a Bacillus strain from swine feces. Antimicrob. Agents Chemoth. 54, 9, 3953–3955. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Degenkolb T, Dieckmann R, Nielsen KF, Gräfenhan T, Theis C, Zafari D, Chaverri P, Ismaiel A, Brückner H, von Döhren H, Thrane U, Petrini O and Samuels GJ, 2008. The Trichoderma brevicompactum clade: a separate lineage with new species, new peptaibiotics, and mycotoxins. Mycol. Progr. 7, 177–219. [Google Scholar]
  36. de Llanos R, Llopis S, Molero G, Querol A, Gil C and Fernández‐Espinar MT, 2011. In vivo virulence of commercial Saccharomyces cerevisiae strains with pathogenicity‐associated phenotypical traits. Int. J. Food Microbiol. 5, 144, 3, 393–399. [DOI] [PubMed] [Google Scholar]
  37. Delorme C, Bartholini C, Bolotine A, Dusko Ehrlich S and Renault P, 2010. Emergence of a cell wall protease in the Streptococcus thermophilus population. Appl. Environm. Microbiol. 76, 2, 451–460. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Dietrich F, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pöhlmann R, Luedi P, Choi S, Wing R, Flavier A, Gaffney T and Philippsen P, 2004. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisisae genome. Science 304, 304–307. [DOI] [PubMed] [Google Scholar]
  39. Do&gcar;an M and Baysal B, 2010. Identification of anaerobic bacteria isolated from various clinical specimens and determination of antibiotic susceptibilities. Mikrobiyol Bul. 44, 2, 211–219. [PubMed] [Google Scholar]
  40. Doi A, Nakajo K, Kamiya T and Ohkusu K, 2010. Splenic abscess caused by Lactobacillus paracasei . J. Infect. Chemother. 17, 1, 122–125. [DOI] [PubMed] [Google Scholar]
  41. Doyle MP and Erickson MC, 2011. Opportunities for mitigating pathogen contamination during on‐farm food production. Int. J. Food Microbiol. in press. [DOI] [PubMed]
  42. EFSA , 2005. Opinion of the Scientific Committee on a request from EFSA related to a generic approach to the safety assessment by EFSA of microorganisms used in food/feed and the production of food/feed additives. The EFSA Journal 226, 1–12. [Google Scholar]
  43. EFSA , 2007. Scientific Opinion of the Scientific Committee on the introduction of a Qualified Presumption of Safety (QPS) approach for assessment of selected microorganisms referred to EFSA. The EFSA Journal 578, 1–16. [Google Scholar]
  44. EFSA , 2008a. Scientific Opinion of the Panel on Biological Hazards on the maintenance of the list of QPS microorganisms intentionally added to food or feed. The EFSA J. 923, 1–48. [Google Scholar]
  45. EFSA , 2008b. Technical guidance. Update of the criteria used in the assessment of bacterial resistance to antibiotics of human or veterinary importance. Prepared by the Panel on Additives and Products or Substances used in Animal Feeds. The EFSA J. 732, 1–15. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. EFSA. 2009. Panel on Biological Hazards (BIOHAZ) Scientific Opinion on the maintenance of the list of QPS microorganisms intentionally added to food or feed (2009 update). EFSA J. 7, 1431–1523. [Google Scholar]
  47. EFSA , 2010. EFSA Panel on Biological Hazards (BIOHAZ); Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2010 update). EFSA Journal 8, 12,1944. [56 pp.] [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. EFSA , 2011a. Scientific Opinion on the modification to the formulation of GalliPro® and compatibility with formic acid. EFSA Journal 9, 3, 2112 [7 pp.]. [Google Scholar]
  49. EFSA , 2011b. Scientific Opinion on the safety and efficacy of Bacillus subtilis PB6 for chickens reared for laying, ducks for fattening, quails, pheasants, partridges, guinea fowl, pigeons, geese for fattening and ostriches. EFSA Journal 9, 3, 2114 [8 pp.]. [Google Scholar]
  50. EFSA , 2011c. Scientific Opinion on the safety and efficacy of InteSwine® (Saccharomyces cerevisiae) as a feed additive for weaned piglets. EFSA Journal 9, 5, 2173 [10 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. EFSA , 2011d. Scientific Opinion on the safety and efficacy of Lactobacillus plantarum (DSM 21762) as a silage additive for all species. EFSA Journal 9, 3, 2113 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  52. EFSA , 2011e, Scientific Opinion on the safety and efficacy of Lactobacillus buchneri (DSM 22963) as a silage additive for all species. EFSA Journal 9, 4, 2138 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. EFSA , 2011f. Scientific Opinion on the safety and efficacy of Lactobacillus plantarum (NCIMB 30236) as a silage additive for all species. EFSA Journal 9, 6, 2275 [2 pp.]. [Google Scholar]
  54. EFSA , 2011g. Scientific Opinion on the safety and efficacy of BioPlus 2B (Bacillus licheniformis DSM 5749 and Bacillus subtilis DSM 5750) as a feed additive for sows. EFSA Journal 9, 9, 2356 [10 pp.]. [Google Scholar]
  55. EFSA , 2011h. Scientific Opinion on Animavit® (Bacillus subtilis CBS 117162) as feed additive for piglets and pigs for fattening. EFSA Journal 9, 9, 2375 [14 pp.]. [Google Scholar]
  56. EFSA , 2011i. Scientific Opinion on the safety and efficacy of Lactobacillus buchneri (DSM 16774) as a silage additive for all species. EFSA Journal 9, 9, 2359 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  57. EFSA , 2011j. Scientific Opinion on the safety and efficacy of Lactobacillus buchneri (DSM 12856) as a silage additive for all species. EFSA Journal 9, 9, 2361 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  58. EFSA , 2011k. Scientific Opinion on the safety and efficacy of Lactobacillus plantarum (DSM 12837) as a silage additive for all species. EFSA Journal 9, 9, 2362 [10 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  59. EFSA , 2011l. Scientific Opinion on the safety and efficacy of Lactobacillus paracasei (DSM 16245) as a silage additive for all species. EFSA Journal 9, 9, 2363 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  60. EFSA , 2011m. Scientific Opinion on the safety and efficacy of Pediococcus acidilactici (DSM 16243) as a silage additive for all species. EFSA Journal 9, 9, 2364 [11 pp.] [Google Scholar]
  61. EFSA , 2011n. Scientific Opinion on the safety and efficacy of Lactobacillus rhamnosus (NCIMB 30121) as a silage additive for all species. EFSA Journal 9, 9, 2365 [11 pp.]. [Google Scholar]
  62. EFSA , 2011o. Scientific Opinion on the safety and efficacy of Lactococcus lactis (NCIMB 30160) as a silage additive for all species. EFSA Journal 9, 9, 2366 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  63. EFSA , 2011p. Scientific Opinion on the safety and efficacy of Lactobacillus plantarum (DSM 12836) as a silage additive for all species. EFSA Journal 9, 9, 2367 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  64. EFSA , 2011q. Scientific Opinion on the safety and efficacy of Lactobacillus paracasei (DSM 16773) as a silage additive for all species. EFSA Journal 9, 9, 2370 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  65. EFSA , 2011r. Scientific Opinion on the safety and efficacy of Lactobacillus brevis (DSM 12835) as a silage additive for all species. EFSA Journal 9, 9, 2368 [11 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  66. EFSA , 2011s. Scientific Opinion on the safety and efficacy of Pediococcus pentosaceus (DSM 12834) as a silage additive for all species. EFSA Journal 9, 9, 2369 [11 pp.]. [Google Scholar]
  67. EFSA , 2011t. Scientific Opinion on the safety and efficacy of Lactococcus lactis (DSM 11037) as a silage additive for all species. EFSA Journal 9, 9, 2374 [2 pp.]. [DOI] [PMC free article] [PubMed] [Google Scholar]
  68. EFSA , 2011u. EFSA approaches to risk assessment in the area of antimicrobial resistance, with an emphasis on commensal microorganisms. Technical Report of EFSA. EFSA Journal 2011, 9, 10, 196. [Google Scholar]
  69. Engel K‐H, Vogel RF, Knorr D, Habermeyer M, Kochte‐Clemens B and Eisenbrand G, 2011. The role of the concept of history of safe use in the safety assessment of novel foods and novel food ingredients. Opinion of the Senate Commission on Food Safety (SKLM) of the German Research Foundation (DFG). Mol. Nutr. Food Res. 55, 957–963. [DOI] [PubMed] [Google Scholar]
  70. Fell JW, Scorzetti G, Statzell‐Tallman A and Boundy‐Mills K, 2007. Molecular diversity and intragenomic variability in the yeast genus Xanthophyllomyces: the origin of Phaffia rhodozyma? FEMS Yeast Res. 7, 8, 1399–1408. [DOI] [PubMed] [Google Scholar]
  71. Fenicia L, Franciosa G, Pourshaban M and Aureli P, 1999. Intestinal toxemia botulism in two young people, caused by Clostridium butyricum type E. Clin. Infect. Dis. 29, 6, 1381–1387. [DOI] [PubMed] [Google Scholar]
  72. Ferraris L, Butel MJ and Aires J, 2010. Antimicrobial susceptibility and resistance determinants of Clostridium butyricum isolates from preterm infants. Int. J. Antimicrob. Agents. 36, 420–423. [DOI] [PubMed] [Google Scholar]
  73. Ferreira CL, Magalhães M, Gueimonde M and Salminen S, 2011. Probiotics: from origin to labeling from a European and Brazilian perspective. Chapter 5, pp. 75–87. In: Probiotics and health claims. Kneifel W and Salminen S (eds.), Wiley‐Blackwell, www.wiley‐blackwell/wiley‐blackwell. [Google Scholar]
  74. Fjelsted A and Ehlers R‐U, 2011. Proposals on how to accelerate registration, in ‘Regulation of biological control agents’, Ehlers R‐U (ed.), Elsevier, pp 375–405. [Google Scholar]
  75. Flórez AB, Tosi L, Danielsen M, von Wright A, Bardowski J, Morelli L and Mayo B, 2008. Resistance,‐susceptibility profiles of Lactococcus lactis and Streptococcus thermophilus strains to eight antibiotics and proposition of new cut‐offs. Int. J. Prob. Preb. 3, 249–256. [Google Scholar]
  76. Forssten SD, Sindelar CW and Ouwehand AC, 2011a. Probiotics from an industrial perspective. Anaerobe in press. [DOI] [PubMed]
  77. Forssten SD, Lahtinen SJ and Ouwehand AC, 2011b. The intestinal microbiota and probiotics. Chapter 2, pp. 41–63. Malago JJ et al. (eds.), Probiotic bacteria and enteric infections, DOI 10.1007/978‐94‐007‐0386‐5 Springer Science Business Media B.V.
  78. Fort M, Sibila M, Pérez‐Martín E, Nofrarías M, Mateu E and Segalés J, 2009. One dose of a porcine circovirus 2 (PCV2) sub‐unit vaccine administered to 3‐week‐old conventional piglets elicits cell‐mediated immunity and significantly reduces PCV2 viremia in an experimental model. Vaccine 27, 4031–4037. [DOI] [PubMed] [Google Scholar]
  79. Freitas AR, Coque TM, Novais C, Hammerum AM, Lester CH, Zervos MJ, Donabedian S, Jensen LB, Francia MV, Baquero F and Peixe L, 2011. Human and swine hosts share vancomycinresistant Enterococcus faecium CC17 and CC5 and Enterococcus faecalis CC2 clonal clusters harboring Tn1546 on indistinguishable plasmids. J. Clin. Microbiol. 49, 3, 925–931. [DOI] [PMC free article] [PubMed] [Google Scholar]
  80. Ganner A, Stoiber C, Wieder D and Schatzmayr, 2010. Quantitative in vivo assay to evaluate the capability of yeast cell fractions from Trichosporon mycotoxinivorans to selectively bind gramnegative pathogens. J. Microbiol. Meth. 83, 168–174. [DOI] [PubMed] [Google Scholar]
  81. Gardiner D, Kazan K, Praud S, Torney F, Rusu A and Manners J, 2010. Early activation of wheat polyamine biosynthesis during Fusarium head blight implicates putrescine as an inducer of trichothecene mycotoxin production. BCM Plant Biol. 10, 289, 2–13. Downloaded on 12 October 2011 at www.biomedcentral.com/1471‐2229/10/289. [DOI] [PMC free article] [PubMed] [Google Scholar]
  82. Germida JJ and Casida LE, 1983. Ensifer adhaerens predatory activity against other bacteria in soil, as monitored by indirect phage analysis. Appl. Environ. Microbiol. 45. 4, 1380–1388. [DOI] [PMC free article] [PubMed] [Google Scholar]
  83. Glickman D., Sprecher H. Chernokozinsky A and Weintraub Z, 2010. Lactococcus lactis catetherrelated bacteremia in an infant. Infection. 38, 145–146. [DOI] [PubMed] [Google Scholar]
  84. Goyache J, Vela AI, Gibello A, Blanco MA, Briones V, Gonzáles S, Téllez S, Ballestros C, Dominguez L and Fernández‐Garrayzábal JF, 2006. Lactococcus lactis subsp. lactis infection in waterfowl: First confirmation in animals. Emerg. Infect. Dis. 7, 884–886. [DOI] [PMC free article] [PubMed] [Google Scholar]
  85. Gueimonde M, Belén Flórez A, van Hoek AHAM, Stuer‐Lauridsen B, Strøman P, de los Reyes‐Gavilán CG and Margolles A, 2010. Genetic basis of tetracycline resistance in Bifidobacterium animalis subsp. lactis. Appl. Environ. Microbiol. 76, 10, 3364–3369. [DOI] [PMC free article] [PubMed] [Google Scholar]
  86. Gupta RS and Gao B, 2009. Phylogenomic analyses of clostridia and identification of novel protein signatures that are specific to the genus Clostridium sensu stricto (cluster I). Int. J. Syst. Evol. Microbiol. 59, 285–294. [DOI] [PubMed] [Google Scholar]
  87. Han J., Na K., 2010. Cutaneous paecilomycosis caused by Paecilomyces variotii in an African pygmy hedgehog (Atelerix albiventris). J. Exotic Pet Medecine 19, 4, 309–312. [Google Scholar]
  88. Harper DM, 2009. Curently approved prophylactic HPV vaccines. Expert Rev. Vaccines 8, 1663–1679. [DOI] [PubMed] [Google Scholar]
  89. Hauser D, Gibert M, Boquet P and Popoff MR, 1992. Plasmid localization of a type E botulinal neurotoxin gene homologue in toxigenic Clostridium butyricum strains, and absence of this gene in non‐toxigenic C. butyricum strains. FEMS Microbiol. Lett. 1, 78,2–3, 251‐255. [DOI] [PubMed] [Google Scholar]
  90. Hawksworth DL, Crous PW, Redhead SA, Reynolds DR, Samson RA, Seifert KA, Taylor JW, Wingfield MJ, Abaci Ö, Aime C, Asan A, Bai F‐Y, de Beer ZW, Begerow D, Berikten D, Boekhout T, Buchanan PK, Burgess T, Buzina W, Cai L, Cannon PF, Crane JL, Damm U, Daniel H‐M, van Diepeningen AD, Druzhinina I, Dyer PS, Eberhardt U, Fell JW, Frisvad JC, Geiser DM, Geml J, Glienke C, Gräfenhan T, Groenewald JZ, Groenewald M, de Gruyter J, Guého‐Kellermann E, Guo L‐D, Hibbett DS, Hong S‐B, de Hoog GS, Houbraken J, Huhndorf SM, Hyde KD, Ismail A, Johnston PR, Kadaifciler DG, Kirk PM, Kõljalg U, Kurtzman CP, Lagneau P‐E, Lévesque CA, Liu X, Lombard L, Meyer W, Miller A, Minter DW, Najafzadeh MJ, Norvell L, Ozerskaya SM, Öziç R, Pennycook SR, Peterson SW, Pettersson OV, Quaedvlieg W, Robert VA, Ruibal C, Schnürer J, Schroers H‐J, Shivas R, Slippers B, Spierenburg H, Takashima M, Taşkin E, Thines M, Thrane U, Uztan AH, van Raak M, Varga J, Vasco A, Verkley G, Videira SIR, de Vries RP, Weir BS, Yilmaz N, Yurkov A and Zhang N, 2011. The Amsterdam Declaration on Fungal Nomenclature. IMA Fungus 2, 1, 105–112. [DOI] [PMC free article] [PubMed] [Google Scholar]
  91. Health Canada , 1999. Novel Food Information – Food Biotechnology: Virus resistant squash line CZW‐3. FD/OFB‐098‐106‐A, 3 pp.
  92. Hegstad K, Mikalsen T, Coque TM, Werner G and Sundsfjord A, 2010. Mobile genetic elements and their contribution to the emergence of antimicrobial resistant Enterococcus faecalis and Enterococcus faecium . Clin. Microbiol. Infect. 16, 6, 541–554. [DOI] [PubMed] [Google Scholar]
  93. Hickey P, Sutton D, Fothergill A, Rinaldi M, Wickes B, Schmidt H and Walsh T, 2009. Trichosporon mycotoxinivorans, a novel respiratory pathogen in patients with cystic fibrosis. J. Clin. Microbiol. 47, 10, 3091–3097. [DOI] [PMC free article] [PubMed] [Google Scholar]
  94. Hofmann C and Strauss M, 1998. Baculovirus‐mediated gene transfer in the presence of human serum or blood facilitated by inhibition of the complement system. Gene Ther. 5, 531–536. [DOI] [PubMed] [Google Scholar]
  95. Houbraken J, Verweij P, Rijs A, Borman A and Samson R, 2010. Identification of Paecilomyces variotii in clinical samples and settings. J. Clin. Microbiol. 48, 8, 2754–2761. [DOI] [PMC free article] [PubMed] [Google Scholar]
  96. Hu YC, 2008. Baculovirus vectors for gene delivery: a review. Current Gene Therapy 8, 54–65. [DOI] [PubMed] [Google Scholar]
  97. Hummel AS, Hertel C, Holzapfel WH and Franz CM, 2007. Antibiotic resistances of starter and probiotic strains of lactic acid bacteria. Appl. Environ. Microbiol. 73, 730–739. [DOI] [PMC free article] [PubMed] [Google Scholar]
  98. ISO/DIS 10932/IDF223. 2010. Milk and milk products ‐ Determination of the minimal inhibitory concentration (MIC) of antibiotics applicable to bifidobacteria and non‐enterococcal lactic acid bacteria (LAB). International Organisation for Standardisation, Geneva, Switzerland. [Google Scholar]
  99. Ishiyama K, Yamazaki H, Senda Y, Yamauchi H and Nakao S, 2011. Leuconostoc bacteremia in three patients with malignancies. J. Infect. Chemother. 2011 17, 3, 412–418. [DOI] [PubMed] [Google Scholar]
  100. Ito A, Hayashi M, Hamasaki T and Ebisu S, 2011. Risk assessment of dental caries by using Classification and Regression Trees. J. Dent. 39, 6, 457–463. [DOI] [PubMed] [Google Scholar]
  101. Jehle JA, Blissard GW, Bonning BC, Cory JS, Herniou EA, Rohrmann GF, Theilmann DA, Thiem SM and Vlak JM, 2006. On the classification and nomenclature of baculoviruses: A proposal for revision. Arch. Virol. 151, 1257–1266. [DOI] [PubMed] [Google Scholar]
  102. Johnsson Holmsberg A‐I, 2011. Tracking the fate of biocontrol microorganisms in the environment using intrinsic SCAR markers. Doctoral Thesis, Swedish University of Agricultural Sciences, Uppsala, Sweden. [Google Scholar]
  103. Izawa N, Serata M, Sone T, Omasa T and Ohtake H, 2011. Hyaluronic acid production by recombinant Streptococcus thermophilus . J. Biosci. Bioengin. 111, 6, 665–670. [DOI] [PubMed] [Google Scholar]
  104. Kanasi E, Dewhirst FE, Chalmers NI, Kent R Jr, Moore A, Hughes CV, Pradhan N, Loo CY and Tanner AC, 2010. Clonal analysis of the microbiota of severe early childhood caries. Caries Res. 44, 5, 485–497. [DOI] [PMC free article] [PubMed] [Google Scholar]
  105. Kantoff PW, Higano CS, Shore ND, Berger ER, Small EJ, Penson DF, Redfern CH, Ferrari AC, Dreicer R, Sims RB, Xu Y, Frohlich MW and Schellhammer PF, 2010. Sipuleucel‐T immunotherapy for castration‐resistant prostate cancer. N. Engl. J. Med. 363, 411–422. [DOI] [PubMed] [Google Scholar]
  106. Kastner S, Perreten V, Bleuler H, Hugenschmidt G, Lacroix C and Meile L, 2006. Antibiotic susceptibility patterns and resistance genes of starter cultures and probiotic bacteria used in food. Syst. Appl. Microbiol. 29, 145–155. [DOI] [PubMed] [Google Scholar]
  107. Kim HS, Park DW, Youn YK, Jo YM, Kim JY, Song JY, Sohn J‐W, Cheong HJ, Kim WJ, Kim MJ and Choi WS, 2010. Liver abscess and empyema due to Lactococcus lactis cremoris . J. Korena Med. Sci. 25, 1669–1671. [DOI] [PMC free article] [PubMed] [Google Scholar]
  108. King AMQ, Adams MJ, Carstens EB and Lefkowitz EJ, 2011. Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, 1327 pp. [Google Scholar]
  109. Kiss L, 2003. A review of fungal antagonists of powdery mildews and their potential as biocontrol agents, Pest Management Sci. 59, 475–483. [DOI] [PubMed] [Google Scholar]
  110. Kiss L, Russell JC, Szentivanyi O, Xu X and Jeffries P, 2004. Biology and biocontrol potential of Ampelomyces mycoparasites, natural antagonists of powdery mildew fungi. Biocontrol Sci. Technol. 14, 7, 635–651. [Google Scholar]
  111. Kiss L, Pintye A, Kovacs G, Jankovics T, Fontaine M, Harvey N, Xu X, Nicot P, Bardin M, Shykoff J and Giraud T, 2011. Temporal isolation explains host‐related genetic differentiation in a group of widespread mycoparasitic fungi. Mol. Ecol. 20, 1492–1507. [DOI] [PubMed] [Google Scholar]
  112. Klare I, Konstabel C, Werner G, Huys G, Vankerckhoven V, Kahlmeter G, Hildebrandt B, Müller‐Bertling S, Witte W and Goossens H, 2007. Antimicrobial susceptibilities of Lactobacillus, Pediococcus and Lactococcus human isolates and cultures intended for probiotic or nutritional use. J. Antimicrob. Chemother. 59, 900–912. [DOI] [PubMed] [Google Scholar]
  113. Klein G, 2011a. Molecular characterization of the probiotic strain Bacillus cereus var. toyoi NCIMB 40112 and differentiation from food poisoning strains. J. Food Protec. 74, 7, 1189–1193. [DOI] [PubMed] [Google Scholar]
  114. Klein G, 2011b. Antibiotic resistance and molecular characterization of probiotic and clinical Lactobacillus strains in relation to safety aspects of probiotics. Foodborne Pathog. Dis. 8, 2, 267–81. [DOI] [PubMed] [Google Scholar]
  115. Kneifel W, 2011. Probiotic products: How can they meet requirements? Chapter 18, pp. 271–282. In: Probiotics and health claims. Kneifel W and Salminen S (eds.), Wiley‐Blackwell, www.wiley‐blackwell/wiley‐blackwell. [Google Scholar]
  116. Kneist S, Schmidt F, Callaway A, Willershausen B, Rupf S, Wicht M and Thiede B, 2010. Diversity of Lactobacillus species in deep carious lesions of primary molars. Eur Arch Paediatr Dent. 11, 4, 181–6. Erratum in: Eur Arch Paediatr Dent. 11, 5, 262. [DOI] [PubMed] [Google Scholar]
  117. Kochar N, Tripathi D, Arestis NJ, Ireland H, Redhead DN and Hayes PC, 2010. Tipsitis: incidence and outcome‐a single centre experience. Eur. J. Gastroenterol. Hepatol. 22, 6, 729–735. [DOI] [PubMed] [Google Scholar]
  118. Krones E, Halilbasic E, Grisold A, Krause R, Trauner M, Fickert P and Zollner G, 2010. Acute hepatitis species as a result of contamination of a food supplement with cytotoxin‐producing Bacillus species. Wiener Klinische Wochenschrift 122, 17–18, A10–A11. [Google Scholar]
  119. Kuiper, HA , Kleter GA, Noteborn HPJM and Kok EJ, 2001. Assessment of the food safety issues related to genetically modified foods. The Plant J. 27, 503–528. [DOI] [PubMed] [Google Scholar]
  120. Kurtzman CP, Fell JW and Boekhout T. (Eds.), 2011. The Yeasts, a Taxonomic Study. Fifth Edition. Elsevier. [Google Scholar]
  121. Ladero V, Rattray FG, Mayo B, Cruz Martín M, Fernández M and Alvarez MA, 2011, Sequencing and transcriptional analysis of the biosynthesis gene cluster of putrescine‐producing Lactococcus lactis . Appl. Environ. Microbiol. 77, 18, 6409–6418. [DOI] [PMC free article] [PubMed] [Google Scholar]
  122. Laengle T and Strasser H, 2010. Developing a risk indicator to comparatively assess environmental risk posed by microbial and conventional pest control agents. Biocontrol Sci. Technol. 20, 7, 659–681. [Google Scholar]
  123. La Gioia F, Rizzotti L, Rossi F, Gardini F, Tabanelli G and Torriani S, 2011. Identification of a tyrosine decarboxylase gene (tdcA) in Streptococcus thermophilus 1TT45 and analysis of its expression and tyramine production in milk. Appl. Environ. Microbiol. 77, 3, 1140–1144. [DOI] [PMC free article] [PubMed] [Google Scholar]
  124. Leclerq T and Courvalin P, 2005. Enterococcus. P. 299–213. In White D. G., Alekshun M. N., and McDermott P. F. (ed.) Frontiers in Antimicrobial Resistance. ASM Press. Washington, DC. [Google Scholar]
  125. Lin K‐H, Sy SL, Chen C‐S, Lee C‐H, Lion Y‐T and Li J‐Y, 2010. Infective endocarditis complicated by intracerebral hemorrhage due to Lactococcus lactis subsp. cremoris. Infection 38, 147–149. [DOI] [PubMed] [Google Scholar]
  126. Liu C, Zhang Z‐Y, Dong K, Yuan J‐P and Guo X‐K, 2009. Antibiotic resistance of probiotic strains of lactic acid bacteria isolated from marketed foods and drugs. Biomed. Environ. Sci. 5, 401–412. [DOI] [PubMed] [Google Scholar]
  127. Liu J, Zhou T, He D, Li, X Z , Wu H J, Liu W and Gao XW, 2011. Functions of lipopeptides Bacillomycin D and Fengycin in antagonism of Bacillus amyloliquefaciens C06 towards Monilinia fructicola . J. Mol. Microbiol. Biotechnol. 20, 1, 43–52. [DOI] [PubMed] [Google Scholar]
  128. Long KS, Poehlsgaard J, Kehrenberg C, Schwarz S and Vester B, 2006. The Cfr rRNA methyltransferase confers resistance to phenicols, lincosamides, oxazolidinones, pleuromutilins, and streptogramin A antibiotics. Antimicrob. Agents Chemother. 50, 2500–2505. [DOI] [PMC free article] [PubMed] [Google Scholar]
  129. López AC and Alippi AM, 2009. Diversity of Bacillus megaterium isolates cultured from honeys. Lwt‐Food Sci. Technol. 42, 1, 212–219. [Google Scholar]
  130. Lopez AC and Alippi AM, 2010. Enterotoxigenic gene profiles of Bacillus cereus and Bacillus megaterium isolates recovered from honey. Revista Argentina de Microbiologia 42, 3, 216–225. [PubMed] [Google Scholar]
  131. Madsen AM, 2011. Occupational exposure to microorganisms used as biocontrol agents in plant production. Front Biosci. 3, 606–620. [DOI] [PubMed] [Google Scholar]
  132. Magan N, Medina A and Aldred, 2011. Possible climate‐change effects on mycotoxin contamination of food crops pre‐and postharvest. Plant Pathol. 60, 150–163. [Google Scholar]
  133. Masunaka A, Sekiguchi H, Takahashi H and Takenaka S, 2010. Distribution and expression of elicitin‐like protein genes of the biocontrol agent Pythium oligandrum . J. Phytopathol. 158, 6, 417–426. [Google Scholar]
  134. Mathias MF and Simionato MR, 2011. Some factors associated with dental caries in the primary dentition of children with Down syndrome. Eur. J. Paediatr. Dent. 12, 1, 37–42. [PubMed] [Google Scholar]
  135. Mayo MA, 1999. Developments in plant virus taxonomy since the publication of the 60th ICTV Report. International Committee on Taxonomy of Viruses. Arch. Virol. 144, 1659–1666. [www.ictvonline.org] [DOI] [PubMed] [Google Scholar]
  136. Mayrhofer S, Mair C, Kneifel W and Domig KJ, 2011. Susceptibility of Bifidobacteria of animal origin to selected antimicrobial agents. Chemother. Res. Practice in press. [DOI] [PMC free article] [PubMed]
  137. McNeill J, Barrie FR, Burdet HM, Demoulin V, Hawksworth DL, Marhold K, Nicolson DH, Prado J, Silva PC, Skog J, Wiersema J and Turland N (eds.), 2006. International Code of Botanical Nomenclature (Vienna Code) adopted by the Seventeenth International Botanical Congress, 2005. [Regnum Vegetabile Vol. 146.] Pp. xviii + 568. A. R. G. Ganter Verlag, Ruggel, Lichtenstein. ibot.sav.sk/icbn/main.htm downloaded on 9th August 2011. [Google Scholar]
  138. Meieregger A, Mayrhuber E and Lettner HP, 2011. Probiotics and health claims: the perspective of the feed industry. Chapter 15, pp. 223–248. In: Probiotics and health claims. Kneifel W and Salminen S (eds.), Wiley‐Blackwell, www.wiley‐blackwell/wiley‐blackwell. [Google Scholar]
  139. Merabet C, Martens M, Mahdhi M, Zakhia F, Sy A, Le Roux C, Domergue O, Coopman R, Bekki A, Mars M, Willems A and de Lajudie P, 2010. Multilocus sequence analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp nov and Ensifer garamanticus sp nov. Int. J. Syst. Evolut. Microbiol. 60, 664–674. [DOI] [PubMed] [Google Scholar]
  140. Miceli MH, Díaz JA and Lee SA, 2011. Emerging opportunistic yeast infections. Lancet Infect. Dis. 11, 142–151. [DOI] [PubMed] [Google Scholar]
  141. Mohamed‐Benkada M, Montagu M., Biard JF, Mondeguer F, Verite P, Dalgarondo M, Bisset J and Pouchus Y, 2006. New short peptaibols from a marine Trichoderma strain, Rapid Commun. Mass Spectrom. 20, 1176–1180. [DOI] [PubMed] [Google Scholar]
  142. Moslehi‐Jenabian S, Lindegaard Pedersen L and Jespersen L, 2010. Beneficial effects of probiotic and food borne yeasts on human health. Nutrients 2, 449–473. [DOI] [PMC free article] [PubMed] [Google Scholar]
  143. Motley WW, Melson AT and Mortensen JE, 2011. Pediatric Metarrhizium anisopliae keratitis. J. Aapos. 15, 1, 101–103. [DOI] [PubMed] [Google Scholar]
  144. Murray BE, 1990. The life and times of the Enterococcus . Clin. Microb. Rev. 3, 46–65. [DOI] [PMC free article] [PubMed] [Google Scholar]
  145. Nagarajappa S and Prasad KV, 2010. Oral microbiota, dental caries and periodontal status in smokeless tobacco chewers in Karnataka, India: a case‐control study. Oral Health Prev. Dent. 8, 3, 211–219. [PubMed] [Google Scholar]
  146. Nawaz M, Wang J, Zhou A, Ma C, Wu X, Moore JE, Millar BC and Xu J, 2011. Characterization and transfer of antibiotic resistance in lactic acid bacteria from fermented food products. Curr. Microbiol. 62, 3, 1081–1089. [DOI] [PubMed] [Google Scholar]
  147. Neela FA, Nonaka L, Rahman MH and Suzuki S, 2009. Transfer of the chromosomally encoded tetracycline resistance gene tet(M) from marine bacteria to Escherichia coli and Enterococcus faecalis . World J. Microbiol. Biotechnol. 25, 1095–1101. [Google Scholar]
  148. Nielsen KF, Gräfenhan T, Zafari D and Thrane U, 2005. Trichothecene production by Trichoderma brevicompactum . J. Agri. Food Chem. 53, 8190–8196. [DOI] [PubMed] [Google Scholar]
  149. Nikolakopoulou TL, Giannoutsou EP, Karabatsou AA and Karagouni AD, 2008, Prevalence of tetracycline resistance genes in Greek seawater habitats. J. Microbiol. 46, 633–640. [DOI] [PubMed] [Google Scholar]
  150. Noti F, Zimmerli S, Goerre S, Carrel T and Suter T, 2009. [Does yoghurt gnaw at cardiac valves?]. Praxis (Bern 1994). 98, 10, 547–550. [DOI] [PubMed] [Google Scholar]
  151. Official Journal , 1991. Council Directive (EC) No 91/414/EEC of 15 July 1991 concerning the placing on of plant protection products on the market. Official Journal 19.08.1991, L 230, 1–32. [Google Scholar]
  152. Official Journal of the European Union , 2003. Regulation (EC) No 1831/2003 of the European Parliament and of the Council of 22 September 2003 on additives for use in animal nutrition. Official Journal of the European Union 18.10.2003, L 268, 29–43. [Google Scholar]
  153. Official Journal of the European Union , 2009. Regulation (EC) No 1107/2009 of the European Parliament and of the Council of 21 October 2009 concerning the placing of plant protection products on the market and repealing Council Directives 79/117/EEC and 91/414/EEC. Official Journal of the European Union 24.11.2009, L 309, 1–49. [Google Scholar]
  154. Ouwehand AC, Svendsen LS and Leyer G, 2011. Probiotics: from strain to product. Chapter 3, pp. 37–48. In: Probiotics and health claims. Kneifel W and Salminen S (eds.), Wiley‐Blackwell, www.wiley‐blackwell/wiley‐blackwell. [Google Scholar]
  155. Pagiotti R, Angelini P, Rubini A, Tirillini B, Granetti B and Venanzoni R, 2010. Identification and characterisation of human pathogenic filamentous fungi and susceptibility to thymus schimperi essential oil. Mycoses 54, 5, e364–e376. [DOI] [PubMed] [Google Scholar]
  156. Park M, Choi Y, Hong S and Shin H, 2010. Genetic variability and mycohosts association of Ampelomyces quisqualis isolates inferred from phylogenetic analyses of ITS rDNA and actin gene sequences. Fungal Biol. 114, 235–247. [DOI] [PubMed] [Google Scholar]
  157. Park B, Park J, Cheong K, Choi J, Jung K, Kim D, Lee Y, Ward T, O'Donnell K, Geiser D and Kang S, 2011. Cyber infrastructures for Fusarium: Three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing. Nucleic Acid Res. 39, 640–646. [DOI] [PMC free article] [PubMed] [Google Scholar]
  158. Paraud C, Lorrain R, Pors I and Chartier C, 2011. Administration of the nematophagous fungus Duddingtonia flagrans to goats: an evaluation of the impact of this fungus on the degradation of faeces and on free‐living soil nematodes. J. Helminthol. in press. [DOI] [PubMed]
  159. Pasquali M, Giraud F, Brochot C, Cocco E, Hoffmann L and Bohn T, 2010. Genetic Fusarium chemotyping as a useful tool for predicting nivalenol contamination in winter wheat. International J. Food Microbiol. 137, 246–253. [DOI] [PubMed] [Google Scholar]
  160. Patel AK, Michaud P, Singhania RR, Soccol CR and Pandey A, 2010. Polysaccharides from probiotics: New developments as food additives. Food Technol. Biotechnol. 48, 4, 451–463. [Google Scholar]
  161. Peck MW, 2009. Biology and genomic analysis of Clostridium botulinum . Review. Adv. Microb. Physiol. 55, 183–265, 320. [DOI] [PubMed] [Google Scholar]
  162. Pei‐Chen W, Chien‐Hsiung L, Hsin‐Yuan T, Ma D and Hsiao C, 2010. The successful medical treatment of a case of Paecilomyces lilacinus keratitis. Cornea 29, 3, 357–358. [DOI] [PubMed] [Google Scholar]
  163. Phelan RW, Clarke C, Morrissey JP, Dobson AD, O'Gara F and Barbosa TM, 2011. Tetracycline resistance‐encoding plasmid from Bacillus sp. strain #24, isolated from the marine sponge Haliclona simulans . Appl. Environ. Microbiol. 77, 1, 327–329. [DOI] [PMC free article] [PubMed] [Google Scholar]
  164. Pilet M‐F and Leroi F, 2011. Applications of protective cultures, bacteriocins and bacteriophages in fresh seafood and seafood products. In Protective cultures, antimicrobial metabolites and bacteriophages for food and beverage biopreservation. Lacroix C (ed.), Woodhead Publishing Series in Food Science, Technology and Nutrition No. 201, ISBN‐13: 978 1 84569 669 6, Woodhead Publishing Limited.
  165. Prillinger H, Messner R, Konig H, Bauer R, Lopandic K, Molnar O, Dangel P, Weigang F, Kirisits T, Nakase T and Sigler L, 1996. Yeasts associated with termites: a phenotypic and genotypic characterization and use of coevolution for dating evolutionary radiation in Asco‐and Basidiomycetes. System. Appl. Microbiol. 19, 265–283. [Google Scholar]
  166. Raaijmakers JM, de Bruijn I, Nybroe O and Ongena M, 2010. Natural functions of lipopeptides from Bacillus and Pseudomonas: more than surfactants and antibiotics. FEMS Microbiol. Rev. 34, 6, 1037–1062. [DOI] [PubMed] [Google Scholar]
  167. Rehner SA, Minnis D, Sung GH, Luangsa‐Ard JJ, Devotto L and Humber RA, 2011. Phylogeny and systematics of the anamorphic, entomopathogenic genus Beauveria . Mycologia 103, 5, 1055–1073. [DOI] [PubMed] [Google Scholar]
  168. Ren J, Xue C, Tian L, Xu M, Chen J, Deng Z, Proksch P and Lin W, 2009. Asperelines A‐F, peptaibols from the marine‐derived fungus Trichoderma asperellum . J. Nat Prod. 72, 6, 1036–1044. [DOI] [PubMed] [Google Scholar]
  169. Rivera‐Gonzalez GC, Swift SL, Dussupt V, Georgopoulos LJ and Maitland NJ, 2011. Baculoviruses as gene therapy vectors for human prostate cancer. J. Invert. Pathol. 107, S5970. [DOI] [PubMed] [Google Scholar]
  170. Rizzotti L, La Gioia F, Dellaglio F and Torriani S, 2009. Characterization of tetracycline‐resistant Streptococcus thermophilus isolates from Italian soft cheeses. Appl. Environ. Microbiol. 75, 12, 4224–4229. [DOI] [PMC free article] [PubMed] [Google Scholar]
  171. Rizzotti L, Simeoni D, Cocconcelli P, Gazzola S, Dellaglio F and Torriani S, 2005. Contribution of enterococci to the spread of antibiotic resistance in the production chain of swine meat commodities. J. Food Prot. 68, 5, 955–965. [DOI] [PubMed] [Google Scholar]
  172. Robin F, Paillard C, Marchandin H, Demeocq F, Bonnet R and Hennequin C, 2010. Lactobacillus rhamnosus meningitis following recurrent episodes of bacteremia in a child undergoing allogeneic hematopoietic stem cell transplantation. J. Clin. Microbiol. 48, 11, 4317–4319. [DOI] [PMC free article] [PubMed] [Google Scholar]
  173. Rochon D, Heikkilä L and Belliveau B, 2009. Draft OECD Issue Paper ‘Discussion on microbial contaminants limits for microbial pest control products’ (2nd version), Health Evaluation Directorate, PMRA, Health Canada, Ottawa, Ontario, Canada, 34pp.
  174. Rogel MA, Hernandez‐Lucas I, Kuykendall LD, Balkwill DL and Martinez‐Romero E, 2001. Nitrogen‐fixing nodules with Ensifer adhaerens harboring Rhizobium tropici symbiotic plasmids. Appl. Environ. Microbiol. 67, 7, 3264–3268. [DOI] [PMC free article] [PubMed] [Google Scholar]
  175. Rosmaninho A, Torres T, Velho G, Lopes V, Armorim I and Selores M, 2010. Paecilomyces lilacinus in transplant patients: an emerging infection. European J. Dermatology 20, 5, 643–644. [DOI] [PubMed] [Google Scholar]
  176. Ruiz N, Petit K, Vansteelandt, Kerzaon I, Baudet J, Amzil Z, Biard JF, Grovel O and Pouchus Y, 2010. Enhancement of domoic acid neurotoxicity on Diptera larvae bioassy by marine fungal metabolites. Toxicon 55, 805–810. [DOI] [PubMed] [Google Scholar]
  177. Russo A, Angeletti S, Lorino G, Venditti C, Falcone M, Dicuonzo G and Venditti M, 2010. A case of Lactobacillus casei bacteraemia associated with aortic dissection: is there a link? New Microbiol. 33, 2, 175–178. [PubMed] [Google Scholar]
  178. Salazar N, Binetti A, Gueimonde, Alonso A and Garrido P, 2011. Safety and intestinal microbiota modulation by the exopolysaccharide‐producing strains Bifidobacterium animalis IPLA R1 and Bifidobacterium longum IPLA E44 orally administered to Wistar rats. Int. J. Food Microbiol. 144, 342–351. [DOI] [PubMed] [Google Scholar]
  179. Sampietro DA, Marin P, Iglesias J, Presello DA, Vattuone MA, Catalan CAN and Jaen MTG, 2010. A molecular based strategy for rapid diagnosis of toxigenic Fusarium species associated to cereal grains from Argentina. Fungal Biol. 114, 1, 74–81. [DOI] [PubMed] [Google Scholar]
  180. Samson RA, Noonim P, Meijer M, Houbraken J, Frisvad JC and Varga J, 2007. Diagnostic tools to identify black aspergilli. Studies in Mycol. 59, 129–145. [DOI] [PMC free article] [PubMed] [Google Scholar]
  181. Sanders ME and Levy DD, 2011. The science and regulations of probiotic food and supplement product labelling. Ann. N.Y. Acad. Sci. 1219, S1, E1–E23. [DOI] [PubMed] [Google Scholar]
  182. Sawada H, Kuykendall LD and Young JM, 2003. Changing concepts in the systematics of bacterial nitrogen‐fixing legume symbionts. J. Gen. Appl. Microbiol. 49, 3, 155–179. [DOI] [PubMed] [Google Scholar]
  183. Saxelin M, Myllyluoma E and Korpela R, 2011. Developing LGG®Extra, a probiotic multispecies combination. Chapter 16, pp. 249–262. In: Probiotics and health claims. Kneifel W and Salminen S (eds.), Wiley‐Blackwell, www.wiley‐blackwell/wiley‐blackwell. [Google Scholar]
  184. Schatzmayr G, Zehner F, Täubel M, Schatzmayr D, Klimitsch A, Loibner A and Binder M, 2006. Microbiologicals for deactivating mycotoxins, Mol. Nutr. Food Res. 50, 543–551. [DOI] [PubMed] [Google Scholar]
  185. Scheepmaker JWA and Butt TM, 2010. Natural and release inoculum levels of entomopathogenic fungal biocontrol agents in soil in relation to risk assessment and in accordance with EU regulations. Biocontrol Sci. Technol. 20, 5, 503–552. [Google Scholar]
  186. Schrank A and Vainstein MH, 2010. Metarhizium anisopliae enzymes and toxins. Toxicon 56, 7, 1267–1274. [DOI] [PubMed] [Google Scholar]
  187. Schroeder K, Bremm KD, Alépée N, Bessems JGM, Blaauboer B, Boehn SN, Burek C, Coecke S, Gombau L, Hewitt NJ, Heylings J, Huwyler J, Jaeger M, Jagelavicius M, Jarrett N, Ketelslegers H, Kocina I, Koester J, Kreysa J, Note R, Poth A, Radtke M, Rogiers V, Scheel J, Schulz T, Steinkellner H, Toeroek M, Whelan M, Winkler P and Diembeck W, 2011. Report from the EPAA workshop: In vitro ADME in safety testing used by EPAA industry sectors. Toxicol. in Vitro 25, 589–604. [DOI] [PubMed] [Google Scholar]
  188. Seff, L. B. 2009. Are herbals as safe as their advocates believe? J. Hepatol. 50, 13–16. [DOI] [PubMed] [Google Scholar]
  189. Seitter (née Resch), M , Nerz C, Rosenstein R, Götz F and Hertel C, 2011. DNA microarray based detection of genes involved in safety and technologically relevant properties of food associated coagulase‐negative staphylococci. Int. J. Food Microbiol. 145, 449–458. [DOI] [PubMed] [Google Scholar]
  190. Stahmann K, Revuelta J and Seulberger H, 2000. Three biotechnical processes using Ashbya gossypii, Candida famata, or Bacillus subtilis compete with chemical riboflavin production. Appl. Microbiol. Biotechnol. 53, 5, 509–516. [DOI] [PubMed] [Google Scholar]
  191. Stickel F, Droz S, Patsenker E, Bogli‐Stuber K, Aebi B and Leib SL, 2009. Severe hepatotoxicity following ingestion of Herbalife (R) nutritional supplements contaminated with Bacillus subtilis . J. Hepatol. 50, 1, 111–117. [DOI] [PubMed] [Google Scholar]
  192. Su S, Zeng X, Bai L, Jiang X and Li L, 2010. Bioaacumulation and biovolatilisation of pentavalent arsenic by Penicillium janthinellum, Fusarium oxysporum and Trichoderma asperellum under laboratory conditions. Curr. Microbiol. 61, 4, 261–266. [DOI] [PubMed] [Google Scholar]
  193. Sugisawa T, Miyazaki T and Hoshino T, 2005. Microbial production of L‐ascorbic acid from D‐sorbitol, L‐sorbose, L‐gulose, and L‐sorbosone by Ketogulonicigenium vulgare DSM 4025. Bioscience Biotechnol. Biochem. 69, 3, 659–662. [DOI] [PubMed] [Google Scholar]
  194. Sullivan R and White J, 2000. Phoma glomerata as a mycoparasite of powdery mildew. Appl. Environ. Microbiol. 66, 425–427. [DOI] [PMC free article] [PubMed] [Google Scholar]
  195. Sundh I and Melin P, 2011. Safety and regulation of yeasts used for biocontrol or biopreservation in the food or feed chain. Antonie van Leeuwenhoek 99, 113–119. [DOI] [PubMed] [Google Scholar]
  196. Suomalainen T, Sigvart‐Mattila P, Mättö J and Tynkkynen S, 2008. In vitro and in vivo gastrointestinal survival, antibiotic susceptibility and genetic identification of Propionibacterium freudenreichii ssp. shermanii JS. Int. Dairy. J. 18, 271–278. [Google Scholar]
  197. Szarewski A, 2010. HPV vaccine: Cervarix. Expert Opin. Biol. Ther. 10, 3, 477–487. [DOI] [PubMed] [Google Scholar]
  198. Tabbene O, Kalai L, Slimene IB, Karkouch I, Elkahoui S, Gharbi A, Cosette P, Mangoni ML, Jouenne T and Limam F, 2011. Anti‐Candida effect of bacillomycin D‐like lipopeptides from Bacillus subtilis B38. Fems Microbiol. Lett. 316, 2, 108–114. [DOI] [PubMed] [Google Scholar]
  199. Takahashi N and Nyvad B, 2011. The role of bacteria in the caries process: ecological perspectives. J. Dent. Res. 90, 294–303. [DOI] [PubMed] [Google Scholar]
  200. Talon R and Leroy S, 2011. Diversity and safety hazards of bacteria involved in meat fermentations. Meat Sci. 89, 3, 303–309. [DOI] [PubMed] [Google Scholar]
  201. Thasana N, Prapagdee B, Rangkadilok N, Sallabhan R, Aye SL, Ruchirawat S and Loprasert S, 2010. Bacillus subtilis SSE4 produces subtulene A, a new lipopeptide antibiotic possessing an unusual C15 unsaturated beta‐amino acid. FEBS Lett. 584, 14, 3209–3214. [DOI] [PubMed] [Google Scholar]
  202. Toomey N, Bolton D and Fanning S, 2010. Characterisation and transferability of antibiotic resistance genes from lactic acid bacteria isolated from Irish pork and beef abattoirs. Res. Microbiol. 161, 127–135. [DOI] [PubMed] [Google Scholar]
  203. Tosi L, Berruti G, Danielsen M, Wind A, Huys G and Morelli L, 2007. Susceptibility of Streptococcus thermophilus to antibiotics. Antonie Van Leeuwenhoek. 92, 1, 21–28. [DOI] [PubMed] [Google Scholar]
  204. Trabelsi S, Hariga D and Khaled S, 2010. First case of Trichoderma Longibrachiatum infection in a renal transplant recipient in Tunisia and review of the literature. Tunis Med. 88, 1, 52–57. [PubMed] [Google Scholar]
  205. Tsuyuki R, Yoshinari T, Sakamoto N, Nagasawa H and Sakuda S, 2011. Enhanceemnt of trichothecene production in Fusarium graminearum by Cobalt Chloride. J. Agric. Food Chem. 59, 1760–1766. [DOI] [PubMed] [Google Scholar]
  206. Urbance JW, Bratina BJ, Stoddars SF and Schmidt TM, 2001. Taxonomic characterization of Ketogulonigenium vulgare gen. nov., sp. nov. and Ketogulonigenium robustum sp. nov., which oxidize L‐sorbose to 2‐keto‐L‐gulonic acid. Int. J. Syst. Evol. Microbiol. 51, 1059–1070. [DOI] [PubMed] [Google Scholar]
  207. Vekiru E, Hametner C, Mitterbauer R, Rechthaler J, Adam G, Schatzmayr G, Krska R and Schuhmacher R, 2010. Cleavage of zearalenone by Trichosporon mycotoxinivorans to a novel nonestrogenic metabolite. Appl. Environ. Microbiol. 76, 7, 2353–2359. [DOI] [PMC free article] [PubMed] [Google Scholar]
  208. Vignaroli C, Zandri G, Aquilanti L, Pasquaroli S and Biavasco F, 2011. Multidrug‐resistant enterococci in animal meat and faeces and co‐transfer of resistance from an Enterococcus durans to a human Enterococcus faecium . Curr Microbiol. 62, 5, 1438–1447. [DOI] [PubMed] [Google Scholar]
  209. Wang ET, Tan ZY, Willems A, Fernández‐López M, Reinhold‐Hurek B and Martínez‐Romero E, 2002. Sinorhizobium morelense sp. nov., a Leucaena leucocephala‐associated bacterium that is highly resistant to multiple antibiotics. Int. J. Syst. Evol. Microbiol. 52, 1687–1693. [DOI] [PubMed] [Google Scholar]
  210. Westwood GS, Huang S‐W and Keyhani NO, 2005. Allergens of the entomopathogenic fungus Beauveria Bassania . Clin. Mol. Allergy 3, 1, 1–8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  211. White TC and Hoot SJ, 2011. Mechanisms of resistance to antifungal agents. In: Manual of Clinical Microbiology, pp. 2008–2019, 10th Edition, ASM Press, Washington DC, [Google Scholar]
  212. Wiedermann CJ, Stockner I and Plattner B, 2010. Bacillus species infective arthritis after knee arthroscopy. Surgical Inf. 11. 6, 555–558. [DOI] [PubMed] [Google Scholar]
  213. Wijesinghe CJ, Wijeratnam RSW, Samarasekara J and Wijesundera R, 2010. Biological control of Thielaviopsis paradoxa on pineapple by an isolate of Trichoderma asperellum . Biol. Control 53, 3, 285–290. [Google Scholar]
  214. Willems A, Fernández‐Lopez M, Muñoz‐Adelantado E, Goris J, de Vos P, Martínez‐Romero E, Toro N and Gillis M, 2003. Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion. Int. J. Syst. Evol. Microbiol. 53, 1207–1217. [DOI] [PubMed] [Google Scholar]
  215. Xu F‐L, Guo Y‐C, Wang H‐X, Fu P, Zeng H‐W, Li Z‐G, Pei X‐Y and Liu X‐M, 2011. PFGE genotyping and antibiotic resistance of Lactobacillus distributed strains in the fermented dairy products. Ann. Microbiol. in press.
  216. Yildiz E, Haresh A, Hammersmith K, Eagle R, Rapuano C and Cohen E, 2010. Alternaria and Paecilomyces keratitis associated with soft contact lens wear. Cornea 29, 5, 564–568. [DOI] [PubMed] [Google Scholar]
  217. Young JM, 2003. The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination ‘Sinorhizobium adhaerens’ (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2003, 53, 2107–2110. [DOI] [PubMed] [Google Scholar]
  218. Zago M, Fornasari ME, Carminati D, Burns P, Suàrez V, Vinderola G, Reinheimer J and Giraffa G, 2011. Characterization and probiotic potential of Lactobacillus plantarum strains isolated from cheeses. Food Microbiol. 28, 1033–1040. [DOI] [PubMed] [Google Scholar]
  219. Zonenschain D, Rebecchi A and Morelli L, 2009. Erythromycin‐ and tetracycline‐resistant lactobacilli in Italian fermented dry sausages. J. Appl. Microbiol. 107, 1559–1568. [DOI] [PubMed] [Google Scholar]

Articles from EFSA Journal are provided here courtesy of Wiley

RESOURCES